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bdbf5198a2
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(v2.1.1.9050) vctrs fix for sir, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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9bf7584d58
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(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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de17de1be9
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(v2.1.1.9048) vctrs update for sir
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2024-06-13 20:55:17 +02:00 |
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3179216c81
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(v2.1.1.9047) unit test and index
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2024-06-13 07:37:53 +02:00 |
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cd1b37ff69
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(v2.1.1.9046) unit test fix
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2024-06-12 14:37:44 +02:00 |
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c753afcd76
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(v2.1.1.9045) fix host in animal guidelines
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2024-06-12 10:32:43 +02:00 |
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3a54711dfe
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(v2.1.1.9044) update website
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2024-06-10 15:10:54 +02:00 |
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31207952d3
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(v2.1.1.9043) fix sir translation with as.double
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2024-06-10 10:34:45 +02:00 |
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a3071cf58b
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(v2.1.1.9042) update translations and example isolates
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2024-06-09 11:31:04 +02:00 |
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af74e1d4f2
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(v2.1.1.9041) antibiotics update
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2024-06-08 17:35:25 +02:00 |
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e2acc513a5
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(v2.1.1.9040) try to put version number in commit msg
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2024-06-07 12:07:07 +02:00 |
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0bda9e9997
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try to add version to commit msg
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2024-06-04 20:21:12 +02:00 |
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c5981cdeb3
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fix unit test
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2024-06-04 20:17:54 +02:00 |
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7c1b564648
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fix SIR interpretation for uti
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2024-05-31 21:24:35 +02:00 |
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60c6c21e45
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fix SIR interpretation
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2024-05-31 09:50:54 +02:00 |
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ba4dc20cf3
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autoplot fix
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2024-05-30 16:39:59 +02:00 |
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d4490c7f25
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fix sorting of MICs, MIC autoplot titles
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2024-05-30 15:50:17 +02:00 |
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c3ce1b551d
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rename limit_mic_range() to rescale_mic()
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2024-05-24 15:07:41 +02:00 |
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d214f74e25
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allow column name for ab in as.sir()
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2024-05-20 21:29:13 +02:00 |
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fc269e667d
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unit test fix
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2024-05-20 18:58:35 +02:00 |
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08a27922a8
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new SDD and N for as.sir()
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2024-05-20 15:27:04 +02:00 |
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b68f47d985
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improved algorithm of as.ab()
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2024-05-12 16:24:44 +02:00 |
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1bce7ed3d3
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fix git hooks
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2024-04-24 11:58:16 +02:00 |
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3e5c7d45c6
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update intro logo
|
2024-04-24 09:58:24 +02:00 |
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35f095cceb
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fixes #148
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2024-04-23 09:34:05 +02:00 |
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2899b3c840
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new mo_group_members()
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2024-04-19 10:18:21 +02:00 |
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7e7bc9d56e
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Merge branch 'main' of https://github.com/msberends/AMR
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2024-04-08 09:58:54 +02:00 |
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d2c5e4b749
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update website colours
|
2024-04-08 09:55:21 +02:00 |
|
Matthijs Berends
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42a23e89a8
|
Update DESCRIPTION
|
2024-04-08 00:52:25 +02:00 |
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94e9a4d99b
|
update MIC implementation
|
2024-04-07 20:22:59 +02:00 |
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0039cb05d6
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update MIC comparisons
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2024-04-05 16:44:43 +02:00 |
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4170def0ec
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unit test
|
2024-03-09 16:46:59 +01:00 |
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bc4f8515e2
|
new Norwegian link
|
2024-03-03 23:24:57 +01:00 |
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f2d245b0cb
|
update navbar colours
|
2024-03-03 19:07:09 +01:00 |
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46634bfcaa
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navbar colour
|
2024-02-25 16:48:04 +01:00 |
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8d077149fa
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new logo
|
2024-02-25 14:20:43 +01:00 |
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b303662ec6
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fix veterinary for R<4
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2024-02-24 19:26:35 +01:00 |
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35963ca3dc
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vctrs fix
|
2024-02-24 18:51:37 +01:00 |
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4aa5413641
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fix unit test
|
2024-02-24 18:14:50 +01:00 |
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7be4dabbc0
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support veterinary MIC/disk translation
|
2024-02-24 15:16:52 +01:00 |
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83e92fd88c
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docu fix
|
2023-12-04 08:19:02 +01:00 |
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7059568581
|
fix scale functions
|
2023-12-03 16:51:54 +01:00 |
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c7461766ce
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Remove RSI from package, add extra MIC scale functions
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2023-12-03 11:34:48 +01:00 |
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6f417d0ef2
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add scale_x_mic()
|
2023-12-03 01:06:00 +01:00 |
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4c11a7bd9c
|
v2.1.1
|
2023-10-22 15:51:27 +02:00 |
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ca72a646d0
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scientific notation for MICs
|
2023-10-20 15:45:00 +02:00 |
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bcab4bc9ba
|
Fixes #123
|
2023-10-20 15:07:11 +02:00 |
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7cda9e575b
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prepare for CRAN
|
2023-10-20 14:51:48 +02:00 |
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7dc96794be
|
fix rounding MICs on R-devel
|
2023-07-20 08:24:27 +02:00 |
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a2cbbf470e
|
AMR v2.1.0 pre-release
|
2023-07-16 16:18:53 +02:00 |
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7a4628b73f
|
Added C. freundii complex and Y. pseudotuberculosis complex
|
2023-07-14 10:49:06 +02:00 |
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fd480d1a9a
|
console hyperlink fix
|
2023-07-14 09:50:13 +02:00 |
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eff164ecb1
|
indicate unique identifiers
|
2023-07-12 21:26:32 +02:00 |
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ea2a4652e9
|
mouse-hover fixes
|
2023-07-12 15:27:43 +01:00 |
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e1b4f99f4f
|
breakpoints fixes
|
2023-07-12 15:20:04 +01:00 |
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0c46f61260
|
MO group fixes
|
2023-07-12 15:04:48 +01:00 |
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9cf054903b
|
version bump
|
2023-07-12 11:42:29 +01:00 |
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66eeeb4b88
|
cleanup
|
2023-07-11 14:29:40 +02:00 |
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8df1cd8d97
|
interpretation fixes
|
2023-07-11 09:50:45 +02:00 |
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5e1221bceb
|
unit test
|
2023-07-10 19:04:12 +02:00 |
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dab20c09f6
|
unit test
|
2023-07-10 18:30:26 +02:00 |
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1b499bf012
|
fixes
|
2023-07-10 17:02:28 +02:00 |
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a4e2e25e3f
|
reftbl in plots, speedup for as.sir() and mo_validate
|
2023-07-10 16:43:46 +02:00 |
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70c601ca11
|
breakpoints UTI interpretation fix
|
2023-07-10 13:41:52 +02:00 |
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3829311dd3
|
random() fix
|
2023-07-08 21:00:49 +02:00 |
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|
acb534102b
|
new species groups, updated clinical breakpoints
|
2023-07-08 17:30:05 +02:00 |
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2d97cca6d9
|
fix reference_df endless loop
|
2023-06-26 13:52:02 +02:00 |
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|
|
1d9ee39cc7
|
fix for mo codes
|
2023-06-22 15:24:18 +02:00 |
|
Dr. Matthijs Berends
|
f065945d7b
|
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
|
2023-06-22 15:10:59 +02:00 |
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9591688811
|
documentation update
|
2023-05-27 10:39:22 +02:00 |
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|
e1966503ee
|
unit testing R4.3
|
2023-05-26 20:37:00 +02:00 |
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|
766db4e21f
|
as.mo fix
|
2023-05-26 19:20:21 +02:00 |
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|
c6135d2082
|
updated microorganism codes
|
2023-05-26 16:10:01 +02:00 |
|
|
|
0bcf55d3b6
|
improve as.mo()
|
2023-05-24 15:55:53 +02:00 |
|
|
|
3018fb87a9
|
icu_exclude in first_isolate(), fixes #110
|
2023-05-17 22:12:10 +02:00 |
|
|
|
8179092c57
|
add XPT files for SAS software
|
2023-05-12 10:07:55 +02:00 |
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|
|
91fa73dedf
|
add oxygen tolerance
|
2023-05-11 21:56:27 +02:00 |
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|
|
bf08d136a0
|
fix coercing NA to custom codes, fixes #107
|
2023-05-08 13:04:18 +02:00 |
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|
|
9de19fdc49
|
documentation
|
2023-04-21 10:07:25 +02:00 |
|
|
|
9148a2dcf4
|
fix mo_rank() for 'unknown' MOs
|
2023-04-20 15:20:41 +02:00 |
|
|
|
2758615cd0
|
version fix
|
2023-04-19 00:34:41 +02:00 |
|
|
|
cabffb22fd
|
anaerobic codes
|
2023-04-17 11:26:19 +02:00 |
|
|
|
ad3061c754
|
unit test
|
2023-04-15 10:32:37 +02:00 |
|
|
|
1a02d302d4
|
Fix translatable strings
|
2023-04-15 09:32:13 +02:00 |
|
|
|
ed70f95380
|
Fix clinical breakpoints
|
2023-04-14 23:14:34 +02:00 |
|
|
|
147f9112e9
|
Fix some WHONET codes
|
2023-04-14 11:12:26 +02:00 |
|
|
|
549790c2a6
|
website
|
2023-03-20 21:59:50 +01:00 |
|
|
|
c28cfa3a77
|
fix documentation
|
2023-03-16 08:55:37 +01:00 |
|
|
|
dd7cc86485
|
help page %like%
|
2023-03-14 19:49:50 +01:00 |
|
|
|
dee675e717
|
Version 2.0 on CRAN
|
2023-03-12 14:07:45 +01:00 |
|
|
|
80cfc503c2
|
check for 2.0
|
2023-03-12 13:02:37 +01:00 |
|
|
|
9179e98e12
|
patient ID in first isolate
|
2023-03-11 17:13:19 +01:00 |
|
|
|
7ad8635994
|
documentation for 'data.table' AB selectors
|
2023-03-11 16:54:02 +01:00 |
|
|
|
45e840c02f
|
update NEWS
|
2023-03-11 14:43:31 +01:00 |
|
|
|
262598b8d7
|
support for old rsi arguments
|
2023-03-11 14:24:34 +01:00 |
|
|
|
4416394e10
|
website update
|
2023-02-26 21:26:58 +01:00 |
|
|
|
1d3d7d40bc
|
get episode unit tests
|
2023-02-24 19:54:56 +01:00 |
|
|
|
2c5a9bb622
|
new relative episode determination in get_episode(), fix for plotting disk/MIC values
|
2023-02-24 17:06:30 +01:00 |
|
|
|
92029c9e95
|
remove note
|
2023-02-24 10:31:36 +01:00 |
|
|
|
049baf0a71
|
fix for antibiograms on R < 3.5
|
2023-02-24 09:43:10 +01:00 |
|
