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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 18:06:11 +01:00
Commit Graph

68 Commits

Author SHA1 Message Date
419cb5b9c4 (v2.1.1.9112) unit test 2024-12-06 18:01:54 +01:00
87271d261a add Python package to repo 2024-11-21 10:06:26 +01:00
da6321c504 (v2.1.1.9102) fix sir 2024-10-18 10:58:57 +02:00
11b1dc2b02 Fix Py 2024-10-17 15:28:13 +02:00
5c4d8fcd2a (v2.1.1.9095) Python support 2024-10-15 17:12:55 +02:00
94501371cd (v2.1.1.9094) fix antibiotics 2024-10-10 16:38:20 +02:00
a558f4c121 (v2.1.1.9080) fix rescale_mic() for an outside MIC range 2024-09-24 22:39:40 +02:00
1ca40e8d67 (v2.1.1.9079) fix for uti in as.sir() 2024-09-24 15:34:12 +02:00
4e96a56b6a (v2.1.1.9073) unit tests 2024-09-19 13:57:36 +02:00
ddb23b6e73 (v2.1.1.9071) update veterinary SIR interpretation, add only_fungi 2024-09-19 11:44:56 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
82585901a7 (v2.1.1.9061) animal host fix 2024-06-19 15:41:45 +02:00
c67d003e9e (v2.1.1.9060) SDD results now in as.sir() 2024-06-19 15:08:23 +02:00
0c3d81f32e (v2.1.1.9059) documentation fix 2024-06-17 22:26:05 +02:00
1bc2e04e1c (v2.1.1.9058) fix hosts, add translations 2024-06-17 22:19:38 +02:00
a4dc37a4e4 (v2.1.1.9057) fix for missing breakpoints 2024-06-17 16:52:12 +02:00
d9e66fb118 (v2.1.1.9056) example fix 2024-06-17 14:52:18 +02:00
1e65b5a289 (v2.1.1.9055) example fix 2024-06-17 14:36:40 +02:00
13baf8d7be (v2.1.1.9054) fix examples 2024-06-17 13:52:02 +02:00
2dee1d71dc (v2.1.1.9053) add verbose to as.sir(), unit test fix 2024-06-17 10:38:45 +02:00
68f7795481 (v2.1.1.9052) unit test fix 2024-06-16 20:53:50 +02:00
bdbf5198a2 (v2.1.1.9050) vctrs fix for sir, small documentation fixes 2024-06-15 15:33:49 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
de17de1be9 (v2.1.1.9048) vctrs update for sir 2024-06-13 20:55:17 +02:00
c753afcd76 (v2.1.1.9045) fix host in animal guidelines 2024-06-12 10:32:43 +02:00
31207952d3 (v2.1.1.9043) fix sir translation with as.double 2024-06-10 10:34:45 +02:00
a3071cf58b (v2.1.1.9042) update translations and example isolates 2024-06-09 11:31:04 +02:00
c5981cdeb3 fix unit test 2024-06-04 20:17:54 +02:00
7c1b564648 fix SIR interpretation for uti 2024-05-31 21:24:35 +02:00
60c6c21e45 fix SIR interpretation 2024-05-31 09:50:54 +02:00
ba4dc20cf3 autoplot fix 2024-05-30 16:39:59 +02:00
d4490c7f25 fix sorting of MICs, MIC autoplot titles 2024-05-30 15:50:17 +02:00
c3ce1b551d rename limit_mic_range() to rescale_mic() 2024-05-24 15:07:41 +02:00
d214f74e25 allow column name for ab in as.sir() 2024-05-20 21:29:13 +02:00
fc269e667d unit test fix 2024-05-20 18:58:35 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
94e9a4d99b update MIC implementation 2024-04-07 20:22:59 +02:00
0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
b303662ec6 fix veterinary for R<4 2024-02-24 19:26:35 +01:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
c7461766ce Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
7cd9ca274c add strep groups to ABCG 2023-07-12 11:41:25 +01:00
66eeeb4b88 cleanup 2023-07-11 14:29:40 +02:00
8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
1b499bf012 fixes 2023-07-10 17:02:28 +02:00
a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate 2023-07-10 16:43:46 +02:00
70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00