 dr. M.S. (Matthijs) Berends
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15c732703d
|
(v1.4.0.9015) bugfix
|
2020-11-10 16:35:56 +01:00 |
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dr. M.S. (Matthijs) Berends
|
dd5a0319ef
|
(v1.4.0.9014) bugfix
|
2020-11-09 15:18:36 +01:00 |
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dr. M.S. (Matthijs) Berends
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d3b1d33210
|
(v1.4.0.9013) is_gram_negative/positive update
|
2020-11-09 13:07:02 +01:00 |
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dr. M.S. (Matthijs) Berends
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760d69a3e0
|
(v1.4.0.9008) like variations
|
2020-10-26 12:23:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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ddae8085e1
|
(v1.4.0.9002) bugfix
|
2020-10-19 20:44:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e9ccb4435
|
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
|
2020-10-19 17:09:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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28e77680c5
|
(v1.4.0) matching score update
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2020-10-08 11:16:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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baf510183c
|
(v1.3.0.9038) prefinal 1.4.0
|
2020-10-04 19:26:43 +02:00 |
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dr. M.S. (Matthijs) Berends
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050a9a04fb
|
(v1.3.0.9030) matching score update
|
2020-09-26 16:26:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e40e42011
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(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
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2020-09-18 16:05:53 +02:00 |
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dr. M.S. (Matthijs) Berends
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7b6dd676f7
|
(v1.3.0.9018) language corrections
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2020-09-14 12:21:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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c4b87fe241
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(v1.3.0.9014) as.mo() speed improvement
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2020-09-03 12:31:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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5e45fdcf2a
|
(v1.3.0.9007) tibble printing
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2020-08-26 11:33:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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c8c8bb4e3a
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(v1.3.0.9006) website update
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2020-08-21 11:40:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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09fba38ea6
|
(v1.2.0.9035) as.mo() speed improvement
|
2020-07-22 10:24:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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6ab468362d
|
(v1.2.0.9034) code cleaning
|
2020-07-13 09:17:24 +02:00 |
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dr. M.S. (Matthijs) Berends
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76fc8e1b14
|
(v1.2.0.9026) move to github
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2020-07-08 14:48:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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93a158aebd
|
(v1.2.0.9011) mo_domain(), improved error handling
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2020-06-22 11:18:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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86d44054f0
|
(v1.1.0.9020) updated taxonomy
|
2020-05-27 16:37:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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ae1969b941
|
(v1.1.0.9019) mo_source fix
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2020-05-25 01:01:14 +02:00 |
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dr. M.S. (Matthijs) Berends
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7f3da74b17
|
(v1.1.0.9004) lose dependencies
|
2020-05-16 13:05:47 +02:00 |
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dr. M.S. (Matthijs) Berends
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b040185269
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(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
|
2020-04-29 14:33:44 +02:00 |
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dr. M.S. (Matthijs) Berends
|
9b8b02960e
|
(v0.9.0.9023) EUCAST 2020 guidelines
|
2020-02-14 19:54:13 +01:00 |
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dr. M.S. (Matthijs) Berends
|
a13c62e6e8
|
(v0.9.0.9016) Support SNOMED codes
|
2020-01-27 19:14:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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ced1a7b7fa
|
(v0.9.0.9008) Happy new year! Add lifecycles
|
2020-01-05 17:22:09 +01:00 |
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dr. M.S. (Matthijs) Berends
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56ce9bf665
|
(v0.9.0) website fixes
|
2019-11-30 12:01:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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c5f00f4a9f
|
(v0.8.0.9036) complete documentation rewrite
|
2019-11-28 22:32:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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7c28b392b1
|
(v0.8.0.9035) add more mo codes
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2019-11-24 22:48:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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e53cc4990c
|
(v0.8.0.9034) add cid to antivirals
|
2019-11-23 12:39:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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09c4b04cd0
|
(v0.8.0.9007) Enterobacterales order
|
2019-10-30 23:02:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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00cdb498a0
|
(v0.7.1.9102) lintr
|
2019-10-11 17:21:02 +02:00 |
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dr. M.S. (Matthijs) Berends
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3596adb295
|
(v0.7.1.9076) mo codes
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2019-09-20 12:33:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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398c5bdc4f
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(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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13d4fef801
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(v0.7.1.9061) mo_property improvement
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2019-08-26 10:03:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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1d423cca89
|
(v0.7.1.9035) cephalosporins and unit tests
|
2019-08-11 19:07:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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6a349bf757
|
(v0.7.1.9032) eucast_rules() improvements
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2019-08-09 14:28:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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90c874025a
|
(v0.7.1.9027) tibble printing
|
2019-08-07 15:37:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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68230d0712
|
(v0.7.1.90012) mo_shortname fix
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2019-07-10 21:36:51 +02:00 |
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dr. M.S. (Matthijs) Berends
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b15d59cf03
|
(v0.7.1.9009) note for WHOCC
|
2019-07-09 11:22:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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156d550895
|
(v0.7.1.9005) new rsi calculations, atc class removal
|
2019-07-01 14:03:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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65c6702b21
|
(v0.7.1.9004) atc class removal
|
2019-06-27 11:57:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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c9156c004a
|
(v0.7.0.9013) mo_synonym fix
|
2019-06-22 14:49:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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9c39c35f86
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(v0.7.0.9010) mo_synonyms, plot/barplot fixes
|
2019-06-16 21:42:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
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dr. M.S. (Matthijs) Berends
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f02679fb63
|
(v0.7.0.9001) new pathovars, small fixes
|
2019-06-07 22:47:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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2667fff8a7
|
(v0.6.1.9050) support staged install
|
2019-06-01 20:40:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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4ed27c7e7a
|
(v0.6.1.9046) ggplot fix
|
2019-05-31 20:25:57 +02:00 |
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dr. M.S. (Matthijs) Berends
|
27380fa021
|
fixes for microorganisms.codes
|
2019-05-28 16:50:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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4ca00e1868
|
speed improvement eucast_rules(), support more old MO codes
|
2019-05-20 12:00:18 +02:00 |
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dr. M.S. (Matthijs) Berends
|
0dc0715dc6
|
CI tests
|
2019-05-13 12:21:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
68cc7ef0d0
|
new antibiotics
|
2019-05-10 16:44:59 +02:00 |
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dr. M.S. (Matthijs) Berends
|
cffb7787d8
|
cfta streptococci
|
2019-04-09 10:34:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
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fbc9191b13
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new EUCAST rules algorithm
|
2019-04-05 18:47:39 +02:00 |
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dr. M.S. (Matthijs) Berends
|
29f444543d
|
added Becker 2019
|
2019-03-26 14:24:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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c6a12266e7
|
DSMZ data
|
2019-03-18 14:29:41 +01:00 |
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dr. M.S. (Matthijs) Berends
|
b319b89750
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WHONET fix
|
2019-03-09 08:21:00 +01:00 |
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dr. M.S. (Matthijs) Berends
|
e835525cf6
|
unknown codes, rsi fix
|
2019-03-02 22:47:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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2565b60024
|
rlang dependency, new fungi
|
2019-02-28 13:56:28 +01:00 |
|
dr. M.S. (Matthijs) Berends
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4ba2ff68e0
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language fix
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2019-02-26 13:02:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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f9ded23023
|
as.mo improvement
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2019-02-26 12:33:26 +01:00 |
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dr. M.S. (Matthijs) Berends
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c506d2893b
|
as.mo improvements
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2019-02-25 15:52:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
0ec76cfa98
|
as.mo improvement
|
2019-02-25 10:42:57 +01:00 |
|
dr. M.S. (Matthijs) Berends
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41ad7a22c8
|
mo_rank mo_url, added Tremellales
|
2019-02-22 22:12:10 +01:00 |
|
dr. M.S. (Matthijs) Berends
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68a9a35ed6
|
algorithm update
|
2019-02-21 18:55:52 +01:00 |
|
dr. M.S. (Matthijs) Berends
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fb1fc3686c
|
Catalogue of life
|
2019-02-20 00:04:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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54f8258f8c
|
Catalogue of Life, replaces ITIS
|
2019-02-18 02:33:37 +01:00 |
|
dr. M.S. (Matthijs) Berends
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ed30312048
|
mo codes for WHONET
|
2019-02-08 16:06:54 +01:00 |
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dr. M.S. (Matthijs) Berends
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5aad26035c
|
edited g.test
|
2019-01-12 11:06:58 +01:00 |
|
dr. M.S. (Matthijs) Berends
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193a2d2863
|
EUCAST update, as.mo bugfix for empty vlaues
|
2019-01-08 16:23:45 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
6b2d464f8c
|
big website update, licence txt update
|
2019-01-02 23:24:07 +01:00 |
|
dr. M.S. (Matthijs) Berends
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b937662a97
|
limits for scale_y_percent - Licence update
|
2018-12-16 22:45:12 +01:00 |
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dr. M.S. (Matthijs) Berends
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01a6d56334
|
add kingdom to mo_taxonomy
|
2018-12-10 21:47:25 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
60fe98bbbd
|
better as.mo handling
|
2018-12-06 14:36:39 +01:00 |
|
dr. M.S. (Matthijs) Berends
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6b0f4ffbd4
|
new kingdom
|
2018-11-09 13:11:54 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
d07e9b904e
|
new function get_locale
|
2018-11-05 13:20:32 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
9cd4ab928a
|
speed improvement as.mo, freq title
|
2018-10-31 12:10:49 +01:00 |
|
dr. M.S. (Matthijs) Berends
|
67521394f6
|
more unit tests
|
2018-10-09 15:41:44 +02:00 |
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dr. M.S. (Matthijs) Berends
|
95c9fdc552
|
CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
|
2018-10-09 13:53:33 +02:00 |
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dr. M.S. (Matthijs) Berends
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ed17db0263
|
renamed year columns to ref
|
2018-10-01 14:44:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
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3119a221e5
|
authors from ITIS, diff for freq
|
2018-10-01 11:39:43 +02:00 |
|
dr. M.S. (Matthijs) Berends
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92c9cc2608
|
diff for freq, fix for mo_shortname
|
2018-09-29 21:54:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
2b0080995e
|
speed improvement for as.mo, more old taxonomic names
|
2018-09-27 23:23:48 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
450992baea
|
new: 1680 old taxonomic names
|
2018-09-25 16:44:40 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
9c566585b0
|
first inclusion of ITIS data
|
2018-09-24 23:33:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5d80cef338
|
added taxonomic data from ITIS
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2018-09-17 20:53:32 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
db14781593
|
add labels_rsi_count
|
2018-09-16 22:11:17 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b792a2754e
|
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
|
2018-09-16 16:43:29 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
d049ec9e69
|
ggplot2_rsi fix
|
2018-09-13 14:48:34 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
cb0d74a4f0
|
support for French and Italian, added quote to freq
|
2018-09-10 15:45:25 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b83e6a9380
|
algoritm improvement, removed all Catabacter except for C. hongkongensis
|
2018-09-10 11:40:54 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4816419f0c
|
AI improvements for microorganisms
|
2018-09-09 12:11:44 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
936198372e
|
translate CoNS
|
2018-09-08 16:24:12 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
26f5be0033
|
support for portuguese, language determination based on system
|
2018-09-08 16:06:47 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
de36b0be23
|
fix for empty values in mo_property
|
2018-09-05 12:21:27 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e39a9a8b05
|
added mo_shortname
|
2018-09-05 10:51:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b388e3fee7
|
Support for German and Spanish microorganism properties, cleanup
|
2018-09-04 11:33:30 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
5965d3c794
|
replaced bactid by mo
|
2018-08-31 13:36:19 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
972fc4f6c7
|
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
|
2018-08-28 13:51:13 +02:00 |