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mirror of https://github.com/msberends/AMR.git synced 2024-12-25 19:26:13 +01:00
Commit Graph

175 Commits

Author SHA1 Message Date
fab64e6728 read.4D improvements 2018-11-15 12:42:35 +01:00
5cb8f3cf72 get_locale improvement 2018-11-12 15:07:43 +01:00
6b0f4ffbd4 new kingdom 2018-11-09 13:11:54 +01:00
9be5e0318b freq: fix na.rm in groups 2018-11-08 16:10:03 +01:00
84e08f516a grouping var for freq 2018-11-06 16:41:59 +01:00
ee664f2a4c small fix 2018-11-05 15:36:07 +01:00
d15bb2ab3f read_4D 2018-11-05 15:30:49 +01:00
d07e9b904e new function get_locale 2018-11-05 13:20:32 +01:00
d0bc05e5b1 speed improvement is.rsi.eligible 2018-11-02 14:55:29 +01:00
40a159e78d more unit tests 2018-11-02 10:27:57 +01:00
e601fd259a test syntax fix 2018-11-01 20:50:10 +01:00
5476fecc73 eucast update 2018-11-01 20:23:33 +01:00
f7687557c9 eucast updates 2018-11-01 17:06:08 +01:00
9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
1bf8dc2983 as.mo speedup: assigned to namespace 2018-10-29 17:26:17 +01:00
707aa20a37 fixes 2018-10-23 14:59:36 +02:00
7997de6a6d mdro and 1st isolate improvements 2018-10-23 11:15:05 +02:00
299c5bea43 na freq, removed factors 2018-10-23 09:42:26 +02:00
9c56257da1 freq - print title bold in markdown 2018-10-22 13:06:54 +02:00
c2a93b46db breaks param, tidyr dep change, freq markdown 2018-10-22 12:32:59 +02:00
ec15b82fd6 param header for freq 2018-10-19 21:52:08 +02:00
86b03577a7 fix for as.mo, added also_single_tested 2018-10-19 13:53:31 +02:00
032c0d51ef better verbose in EUCAST 2018-10-19 00:57:10 +02:00
b464dd524a new verbose 2018-10-19 00:17:03 +02:00
0ef91be3ac param rules for EUCAST 2018-10-18 12:10:10 +02:00
693f64bdbf new EUCAST rules: clinical breakpoints 2018-10-17 17:32:34 +02:00
d5a41de711 parameter combine_IR 2018-10-16 09:59:31 +02:00
5b5b95a47b count_all and some fixes 2018-10-12 16:35:18 +02:00
e7d937d36e update NEWS 2018-10-10 10:50:19 +02:00
67521394f6 more unit tests 2018-10-09 15:41:44 +02:00
95c9fdc552 CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
6d761436f7 benchmarks on readme and speed improvement for direct mo codes 2018-10-01 16:26:02 +02:00
ed17db0263 renamed year columns to ref 2018-10-01 14:44:40 +02:00
3119a221e5 authors from ITIS, diff for freq 2018-10-01 11:39:43 +02:00
92c9cc2608 diff for freq, fix for mo_shortname 2018-09-29 21:54:32 +02:00
a6aa9e95fb completed old taxonomic names 2018-09-28 20:13:13 +02:00
768fe17324 removed clipboard functions as it violated CRAN policies 2018-09-28 16:05:18 +02:00
2b0080995e speed improvement for as.mo, more old taxonomic names 2018-09-27 23:23:48 +02:00
450992baea new: 1680 old taxonomic names 2018-09-25 16:44:40 +02:00
9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
5d80cef338 added taxonomic data from ITIS 2018-09-17 20:53:32 +02:00
7680e4edd8 add shortest and longest to freq for characters 2018-09-17 09:42:09 +02:00
db14781593 add labels_rsi_count 2018-09-16 22:11:17 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
b0ca49d68d small improvement for is.rsi.eligible, more unit tests 2018-09-14 11:54:01 +02:00
cf5711fb0b algorithm improvement 2018-09-14 10:31:21 +02:00
d049ec9e69 ggplot2_rsi fix 2018-09-13 14:48:34 +02:00
cb0d74a4f0 support for French and Italian, added quote to freq 2018-09-10 15:45:25 +02:00
b83e6a9380 algoritm improvement, removed all Catabacter except for C. hongkongensis 2018-09-10 11:40:54 +02:00
4816419f0c AI improvements for microorganisms 2018-09-09 12:11:44 +02:00