inputs
This commit is contained in:
jeremias
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63
input/Graphics_input.yaml
Executable file
63
input/Graphics_input.yaml
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#################################################
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#
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# Input file for Graphics
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#
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#################################################
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ppecol: 'coral'
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stecol: 'yellowgreen'
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daecol: 'cyan'
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corcol: 'indigo'
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refcol: 'black'
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dP:
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apply: false
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data: '/home/yeye/Desktop/dP/results/11AoCoPhantomRest2/R1/testBF/'
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R: [1]
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#catheter: '/home/yeye/Desktop/PhD/MEDICAL_DATA/DatosSEPT2019/Phantom_catheter/cat9mm_Stress/pressure_drop.npz'
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catheter: 'None'
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#factors: [130,90,1.58,-0.03,0] # 9mm Rest [x0,x1,a,b,theta]
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#factors: [52,35,0.9,0.05,0] # 9mm Stress [x0,x1,a,b,theta]
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#factors: [162,90,1.67,0.03,0] # 11mm Rest [x0,x1,a,b,theta]
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mode: 'cib'
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estim: ['PPE','STE','COR']
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save: True
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name: '/home/yeye/Desktop/11AoCoPhantomRest2_BF.png'
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Histograms:
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apply: false
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outpath: '/home/yeye/Desktop/'
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colors:
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0: 'orangered'
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1: 'lime'
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2: 'dodgerblue'
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meshnames:
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0: 'coaortaH1'
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1: 'coaortaRH2'
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2: 'coaortaRH3'
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paths:
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0: '/home/yeye/Desktop/PhD/AORTA/MESH/coaorta/H1/'
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1: '/home/yeye/Desktop/PhD/AORTA/MESH/coaorta/H2/'
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2: '/home/yeye/Desktop/PhD/AORTA/MESH/coaorta/H3/'
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HistCorrector:
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apply: false
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errors: '/home/yeye/Desktop/testH/H2/errors.dat'
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outpath: '/home/yeye/Desktop/h2_160.png'
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Error-curves:
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apply: false
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norm: 2
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folder: '/home/yeye/Desktop/First/'
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resol: ['H2']
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mode: ['meas','corrs']
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times: ['30ms']
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colors: ['orangered','lime','dodgerblue']
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outpath: '/home/yeye/Desktop/'
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Components:
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apply: True
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folder: '/home/yeye/Desktop/Corrector_2019/figures/Errorcurves/'
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subfolders: ['11mm','13mm','Normal']
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type: ['mean','max']
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colors: ['orangered','lime','dodgerblue']
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outpath: '/home/yeye/Desktop/'
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80
input/PostCheck_input.yaml
Executable file
80
input/PostCheck_input.yaml
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#################################################
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#
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# Input file for the checkpoint postprocessing
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#
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#################################################
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Corrector:
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apply: false
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mode: 'colormap' # h5 , histogram, colormap
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outpath: '/home/yeye/Desktop/Corrector_2019/figure3/11mm/'
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mesh_path: '/home/yeye/Desktop/Corrector_2019/meshes/11AoCoPhantomRest2.h5'
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u_path: '/home/yeye/Desktop/Corrector_2019/First/meas/11mmAoCo2/'
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w_path: '/home/yeye/Desktop/Corrector_2019/First/corrector/11mmAoCo2/'
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wname: 'w_COR_impl_stan'
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uname: 'u'
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dt: 0.03072
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Velocity:
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apply: false
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mesh_path: '/home/yeye/Desktop/Corrector_2019/meshes/NormalAoCoPhantomRest2.h5'
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checkpoint: '/home/yeye/Desktop/Corrector_2019/First/meas/NormalAoCo2/'
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undersampling: 1
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dt: 0.03072
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filename: 'u'
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Estim_Pressure:
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apply: false
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filename: 'p_COR_impl_stan'
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outpath: '/home/yeye/Desktop/dP/results/11AoCoPhantomRest2/R1/testBF/'
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method: spheres # slices, boundaries, spheres
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dt: 0.03072
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boundaries: [2,3]
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spheres:
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- center: [0.09, 0.093, 0.08] # 11mm
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#- center : [0.08, 0.09, 0.08]
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#- center : [0.093, 0.09, 0.085] # Normal
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radius: 0.005
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Npts: 32
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- center: [0.134, 0.135, 0.026] # 11mm
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#- center : [0.125, 0.135, 0.025] # 13 mm
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#- center : [0.13, 0.14, 0.03] # Normal
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radius: 0.005
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Npts: 32
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Outlet_Wind:
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apply: false
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mesh_path: '/home/yeye/NavierStokes/examples/meshes/aorta.h5'
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checkpoint: '/home/yeye/NavierStokes/examples/results/aorta/'
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filename: ['u','p']
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bnds: [3,4,5,6]
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out_path: '/home/yeye/NavierStokes/examples/results/aorta/'
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Error-curves:
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apply: true
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dt: 0.03072
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type: ['mean','max']
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meshpath: '/home/yeye/Desktop/Corrector_2019/meshes/NormalAoCoPhantomRest1.4.h5'
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ref_check: '/home/yeye/Desktop/Corrector_2019/I/meas/NormalRest1.4/R1/'
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ref_name: 'u'
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undersampling: 1
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com_check: '/home/yeye/Desktop/Corrector_2019/I/corrector/NormalRest1.4/'
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com_name: 'w_COR_impl_stan'
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outpath: '/home/yeye/Desktop/Corrector_2019/figures/Errorcurves/Normal/'
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Temporal-Average:
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apply: false
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meshpath: '/home/yeye/Desktop/PhD/AORTA/MESH/coaorta/H1/coaortaH1.h5'
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original_check: '/home/yeye/Desktop/First/H1/dt5ms/coaorta/'
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xdmf: false
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dt: 0.005
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subsampling_rate: 6
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out_check: '/home/yeye/Desktop/First/H1/test/'
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Temporal-Interpolation:
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apply: false
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meshpath: '/home/yeye/Desktop/Corrector_2019/meshes/11AoCoPhantomRest1.4.h5'
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original_check: '/home/yeye/Desktop/Corrector_2019/I/meas/11mmRest1.4/R1/'
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xdmf: true
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dt: 0.03072
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dt_new: 0.015
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out_check: '/home/yeye/Desktop/Corrector_2019/I/meas/11mmRest1.4/dt15ms/'
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138
input/aorta.yaml
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138
input/aorta.yaml
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# Set of default parameters for steady Navier-Stokes
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mesh: '/home/yeye/Desktop/PhD/AORTA/MESH/coaorta/H1/coaortaH1.h5'
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density: 1.119
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dynamic_viscosity: 0.0483
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stokes: False
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io:
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write_hdf5: True
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write_hdf5_timeseries: False
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write_xdmf: True
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write_path: '/home/yeye/Desktop/coaorta'
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restart:
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path: '' # './projects/nse_coa3d/results/test_restart2/'
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time: 0
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write_checkpoints: true
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write_velocity: 'update' # tentative
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log: False
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boundary_conditions:
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- id: 2
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type: 'dirichlet'
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value: ['0','0','U*sin(DOLFIN_PI*t/Th)*(t<=Th) + (Th<t)*(3.67949466208*U*sin(9*DOLFIN_PI*t/Th)*exp(-t*10))']
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degree: 3
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parameters:
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U: -30 # 60 original
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Th: 0.35 # 0.35 original
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t: 0
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- id: 1
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type: 'dirichlet'
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value: ['0','0','0']
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degree: 2
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- id: 3
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type: 'windkessel'
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value: [10,0.01,1000]
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p0: [47,1333.223874]
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- id: 4
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type: 'windkessel'
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value: [250,0.0001,8000] # [R,C,R_d]
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p0: [47,1333.223874]
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- id: 5
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type: 'windkessel'
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value: [250,0.0001,8000] # [R,C,R_d]
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p0: [47,1333.223874]
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- id: 6
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type: 'windkessel'
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value: [250,0.0001,8000] # [R,C,R_d]
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p0: [47,1333.223874]
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timemarching:
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velocity_pressure_coupling: 'fractionalstep' # monolithic, fractionalstep
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monolithic:
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timescheme: 'gmp' # generalized midpoint, steady FIXME TODO
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theta: 1 # 1: Euler, 0.5: implicit midpoint rule (one-legged)
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nonlinear:
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method: 'constant_extrapolation' # constant_extrapolation, linear_extrapolation, newton, picard, snes
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maxit: 20
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init_steps: 30
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use_aitken: 1 # 0: False, 1: Picard only, 2: all
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report: 1 # 0: None, 1: residuals, 2: residuals and energy (inflow/driving/forcing via ESSENTIAL Dbcs!)
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atol: 1.e-6 # note: dot required!!
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rtol: 1.e-16
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stol: 0.0
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fractionalstep:
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scheme: 'CT' # CT, IPCS
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coupled_velocity: False # False faster, True needed if robin_bc implicit
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robin_bc_velocity_scheme: 'implicit' # explicit, semi-implicit, implicit
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transpiration_bc_projection: 'robin' # robin, dirichlet
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flux_report_normalize_boundary: 1
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T: 0.8 # end time
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dt: 0.005
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write_dt: 0.05
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checkpoint_dt: 0.05 # <= 0: only last; else value + last
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report: 1 # 0: print nothing, 1: print time step and writeout, 2: 1 + flux
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#estimation:
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# boundary_conditions:
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# - id: 2
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# type: 'dirichlet'
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# initial_stddev: [0.2]
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# parameters: [U]
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#
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# measurements:
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# -
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# mesh: '/home/yeye/Desktop/PhD/AORTA/MESH/aorta_coarse/aorta_coarse_marked.h5'
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# fe_degree: 0
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# xdmf_file: '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_coarse2/measurements/meas.xmf'
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# #file_root: '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_coarse2/measurements2/meas2.h5'
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# file_root: '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_coarse2/measurements/u{i}.h5'
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# indices: [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20] #,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45] # indices of checkpoints to be processed. 0 == all
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# noise_stddev: 1 # standard deviation of Gaussian noise
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#
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# roukf:
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# particles: 'simplex'
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# observation_operator: 'postprocessing'
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# reparameterize: True
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#observations:
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# mesh: '/home/yeye/Desktop/PhD/AORTA/MESH/aorta_coarse/aorta_coarse_marked.h5'
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# timeseries: '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_coarse2/measurements'
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# stddev: 10. # noiselevel x VENC
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# solver setup
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fem:
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velocity_space: p1 # p1 p1b/p1+ p2
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pressure_space: p1 # p1 p0/dg0 dg1
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strain_symmetric: 0
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convection_skew_symmetric: 1 # aka Temam term
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stabilization:
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forced_normal:
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enabled: false
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boundaries: [4,5,6]
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gamma: 10
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backflow_boundaries: [3,4,5,6]
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streamline_diffusion:
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enabled: False
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parameter: 'shakib' # standard, shakib, codina, klr
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length_scale: 'metric' # average, max, metric
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consistent: False # deprecated
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Cinv: ~
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monolithic:
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infsup: False # pspg, pressure-stabilization
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graddiv: False
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consistent: False
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pressure_stab_constant: 1.
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fix_pressure: False
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fix_pressure_point: [0., 0. , 0.]
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linear_solver:
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method: 'lu'
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# inputfile: './projects/nse_coa3d/input/pc/MUMPS_default.yaml'
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# inputfile: './input/pc/fgmres_gamg_rtol1e-6.yaml'
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131
input/aorta_roukf.yaml
Executable file
131
input/aorta_roukf.yaml
Executable file
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# Set of default parameters for steady Navier-Stokes
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mesh: '/home/yeye/Desktop/PhD/AORTA/MESH/aorta_coarse/aorta_coarse_marked.h5'
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density: 1.2
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dynamic_viscosity: 0.035
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stokes: False
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io:
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write_hdf5: True
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write_hdf5_timeseries: False
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write_xdmf: True
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write_path: '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_coarse/roukf'
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restart:
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path: '' # './projects/nse_coa3d/results/test_restart2/'
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time: 0
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write_checkpoints: True
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write_velocity: 'update' # tentative
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log: False
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write_outlets: False
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outlets_path: '/home/yeye/Desktop/PhD/AORTA/outlets/'
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boundary_conditions:
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- id: 2
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type: 'dirichlet'
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value: ['0','0','-0.5*U*(fabs( sin(2*DOLFIN_PI*t/Th)) + sin(2*DOLFIN_PI*t/Th) )*(t<0.7)']
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degree: 3
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parameters:
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U: 60 # 60 original
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Th: 0.7 # 0.7 original
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t: 0
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- id: 1
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type: 'dirichlet'
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value: ['0','0','0']
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degree: 2
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- id: 3
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type: 'windkessel'
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value: [100,0.01,1000]
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- id: 4
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type: 'windkessel'
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value: [250,0.0001,8000] # [R,C,R_d]
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- id: 5
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type: 'windkessel'
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value: [250,0.00001,8000] # [R,C,R_d]
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- id: 6
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type: 'windkessel'
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value: [250,0.0001,8000] # [R,C,R_d]
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timemarching:
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velocity_pressure_coupling: 'fractionalstep' # monolithic, fractionalstep
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monolithic:
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timescheme: 'gmp' # generalized midpoint, steady FIXME TODO
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theta: 1 # 1: Euler, 0.5: implicit midpoint rule (one-legged)
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nonlinear:
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method: 'constant_extrapolation' # constant_extrapolation, linear_extrapolation, newton, picard, snes
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maxit: 20
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init_steps: 30
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use_aitken: 1 # 0: False, 1: Picard only, 2: all
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report: 1 # 0: None, 1: residuals, 2: residuals and energy (inflow/driving/forcing via ESSENTIAL Dbcs!)
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atol: 1.e-6 # note: dot required!!
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rtol: 1.e-16
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stol: 0.0
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fractionalstep:
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scheme: 'CT' # CT, IPCS
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coupled_velocity: False # False faster, True needed if robin_bc implicit
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robin_bc_velocity_scheme: 'implicit' # explicit, semi-implicit, implicit
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transpiration_bc_projection: 'robin' # robin, dirichlet
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flux_report_normalize_boundary: 1
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T: 0.9 # end time
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dt: 0.01
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write_dt: 0.01
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checkpoint_dt: 0.01 # <= 0: only last; else value + last
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report: 1 # 0: print nothing, 1: print time step and writeout, 2: 1 + flux
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estimation:
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boundary_conditions:
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- id: 2
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type: 'dirichlet'
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initial_stddev: [10]
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parameters: [U]
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measurements:
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-
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mesh: '/home/yeye/Desktop/PhD/AORTA/MESH/aorta_coarse/aorta_coarse_marked.h5'
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fe_degree: 1
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xdmf_file: '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_coarse/measurements/meas.xdmf'
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file_root: '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_coarse/measurements/u{i}.h5'
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indices: 0 # indices of checkpoints to be processed. 0 == all
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noise_stddev: 20 # standard deviation of Gaussian noise
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roukf:
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particles: 'simplex' # unique or simplex
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observation_operator: 'state' #state or postprocessing
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reparameterize: False
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#observations:
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# mesh: '/home/yeye/Desktop/PhD/AORTA/MESH/aorta_coarse/aorta_coarse_marked.h5'
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# timeseries: '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_coarse2/measurements'
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# stddev: 10. # noiselevel x VENC
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# solver setup
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fem:
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velocity_space: p1 # p1 p1b/p1+ p2
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pressure_space: p1 # p1 p0/dg0 dg1
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strain_symmetric: 0
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convection_skew_symmetric: 1 # aka Temam term
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stabilization:
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backflow_boundaries: [2,3,4,5,6]
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streamline_diffusion:
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enabled: False
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parameter: 'shakib' # standard, shakib, codina, klr
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length_scale: 'metric' # average, max, metric
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consistent: False # deprecated
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Cinv: ~
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monolithic:
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infsup: False # pspg, pressure-stabilization
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graddiv: False
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consistent: False
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pressure_stab_constant: 1.
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fix_pressure: False
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fix_pressure_point: [0., 0. , 0.]
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linear_solver:
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method: 'lu'
|
||||
# inputfile: './projects/nse_coa3d/input/pc/MUMPS_default.yaml'
|
||||
# inputfile: './input/pc/fgmres_gamg_rtol1e-6.yaml'
|
||||
50
input/cfd_input.yaml
Executable file
50
input/cfd_input.yaml
Executable file
@ -0,0 +1,50 @@
|
||||
#################################################
|
||||
#
|
||||
# Input file for CFD Monolithic Solver
|
||||
#
|
||||
#################################################
|
||||
mesh_path : '/home/p283370/Desktop/PhD/AORTA/MESH/aorta_fine/aorta_fine_marked.h5'
|
||||
write_xdmf : False
|
||||
savepath : '/home/yeye/Desktop/PhD/AORTA/DATA/monolithic/'
|
||||
write_checkpoint : False
|
||||
checkpoint_path : '/home/yeye/Desktop/PhD/AORTA/DATA/monolithic/checkpoint/'
|
||||
write_outlets : False
|
||||
outlets_path : '/home/yeye/Desktop/PhD/AORTA/DATA/monolithic/outlets/'
|
||||
|
||||
Tf : 0.9 # seg
|
||||
density : 1.2 # gr/cm3
|
||||
dynamic_viscosity : 0.035
|
||||
dt : 0.005
|
||||
dt_write : 0.01
|
||||
checkpoint_dt : 0.02
|
||||
|
||||
|
||||
stab:
|
||||
pspg : 1
|
||||
epsilon : 0.01
|
||||
backflow : 1
|
||||
back_id : [3,4,5,6]
|
||||
temam : 1
|
||||
supg : 0
|
||||
pssu : 0
|
||||
|
||||
param:
|
||||
U : 60
|
||||
period : 0.7
|
||||
Nvel : 1
|
||||
Npress : 1
|
||||
theta : 1
|
||||
|
||||
windkessel:
|
||||
id : [3,4,5,6]
|
||||
R_p : {'3':100 , '4':250, '5':250 , '6':250 }
|
||||
R_d : {'3':1000, '4':8000, '5':8000 , '6':8000}
|
||||
C : {'3':0.01, '4':0.0001, '5':0.00001, '6':0.0001}
|
||||
alpha : {'3':0 , '4':0 , '5':0 , '6':0}
|
||||
beta : {'3':0 , '4':0 , '5':0 , '6':0}
|
||||
gamma : {'3':0 , '4':0 , '5':0 , '6':0}
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
163
input/mri_input.yaml
Executable file
163
input/mri_input.yaml
Executable file
@ -0,0 +1,163 @@
|
||||
#################################################
|
||||
#
|
||||
# Input file for 4D flow
|
||||
#
|
||||
#################################################
|
||||
|
||||
phase_contrast:
|
||||
apply : False
|
||||
dealiased : True
|
||||
VENC : 400
|
||||
meas0 : '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/9AoCoPhantom0.9/Mag9AoCo0.90.npz'
|
||||
measG : '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/9AoCoPhantom0.9/Mag9AoCo0.9G.npz'
|
||||
output : '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/9AoCoPhantom0.9/u_R1.npz'
|
||||
|
||||
resize:
|
||||
apply : False
|
||||
dim : [120,120,84]
|
||||
loadseq : '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/Uffine/aoreal.npz'
|
||||
save : True
|
||||
savepath : '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/Uffine/aoreal_rs.npz'
|
||||
|
||||
magnetization_CIB:
|
||||
apply : False
|
||||
loadpath : '/home/yeye/Desktop/PhD/MEDICAL_DATA/Phantom/With_AoCo_9mm/MATLAB_FILES/'
|
||||
savepath : '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/9AoCoPhantom0.9/Mag9AoCo0.9.npz'
|
||||
|
||||
magnetization:
|
||||
apply : False
|
||||
loadseq : '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/Uffine/aoreal.npz'
|
||||
VENC : 250
|
||||
save : True
|
||||
savepath : '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/MAG/Mag9AoCoE1.npz'
|
||||
|
||||
sequence:
|
||||
apply: False
|
||||
checkpoint_path: '/home/yeye/Desktop/First/H1/dt5ms/coaorta/'
|
||||
meshpath: '/home/yeye/Desktop/PhD/AORTA/MESH/coaorta/H1/coaortaH1.h5'
|
||||
sampling_rate: 1
|
||||
boxtype: 'fix_resolution'
|
||||
ranges: {'x': [10.8,21] , 'y': [13,19] , 'z': [-0.1,11.5] }
|
||||
resol: [0.14,0.14,0.14]
|
||||
boxsize: [80,80,80]
|
||||
name: 'SH1_5ms'
|
||||
|
||||
cs:
|
||||
apply: false
|
||||
short: false
|
||||
seqpath: '/home/yeye/Desktop/Corrector_2019/Second/Vol3/dicom/u_R1.mat'
|
||||
Mpath: '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/MAG/MG.npz'
|
||||
VENC: 160 # cm/s
|
||||
noise: false
|
||||
R: [2,4,8] # Acceleration factors
|
||||
savepath: '/home/yeye/Desktop/Corrector_2019/Second/Vol3/dicom/'
|
||||
name: 'ucs'
|
||||
|
||||
kt-BLAST:
|
||||
apply : False
|
||||
VENC : 3.5 # cm/s
|
||||
mode : 'kxky'
|
||||
R : [4] # Acceleration factors
|
||||
noise : False
|
||||
save : True
|
||||
savepath : '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/9AoCoPhantomRest2E1/'
|
||||
name : 'KT_kxky'
|
||||
|
||||
reference:
|
||||
apply : False
|
||||
#checkpoint_path : '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_ffine/dt0.0005/checkpoint/'
|
||||
checkpoint_path : '/home/yeye/Desktop/PhD/AORTA/DATA/undersampling/MAG_2.5/R1/checkpoint/'
|
||||
#meshpath : '/home/yeye/Desktop/PhD/AORTA/MESH/aorta_ffine/aorta_ffine_marked.h5'
|
||||
meshpath : '/home/yeye/Desktop/PhD/AORTA/MESH/structured/aoreal_2.5_marked.h5'
|
||||
under_rate : 1
|
||||
fix_const : 0 # 0: false, 1: substract zero_point
|
||||
zero_point : [12.79353, 14.32866, 6.51101]
|
||||
savepath : '/home/yeye/Desktop/dP/results/MAG_2.5/'
|
||||
save : True
|
||||
name : 'ref'
|
||||
|
||||
norms:
|
||||
apply : False
|
||||
field_path : '/home/yeye/Desktop/PhD/AORTA/DATA/ct/aorta_coarse/'
|
||||
plot : True
|
||||
|
||||
create_checkpoint:
|
||||
apply: false
|
||||
loadseq: '/home/yeye/Desktop/Corrector_2019/Second/Vol2/dicom/mod/'
|
||||
seqname: 'u'
|
||||
extension: '.mat'
|
||||
mesh_into: '/home/yeye/Desktop/Corrector_2019/Second/Vol2/dicom/mod/aorta.h5'
|
||||
boxtype: 'box_zeros'
|
||||
boxsize: [80,80,80]
|
||||
resol: [0.14,0.14,0.14]
|
||||
ranges: {'x': [10.8,21] , 'y': [13,19] , 'z': [-0.1,11.5] }
|
||||
masked: False
|
||||
masked_seq: '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/Uffine/aoreal_2.5.npz'
|
||||
dt: 0.0343 #vol 1,2,4
|
||||
#dt: 0.03 #vol3
|
||||
under_rate: 1
|
||||
Rseq: [1]
|
||||
savepath: '/home/yeye/Desktop/Corrector_2019/Second/Vol2/dicom/'
|
||||
xdmf: true
|
||||
|
||||
peak_pv:
|
||||
apply : False
|
||||
orig_seq : '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/aorta_Ucoarse.npz'
|
||||
peak_slice : 6
|
||||
R : [1,2]
|
||||
p_comp : 'error' # 'peak' or 'error'
|
||||
flux_bnd : [2]
|
||||
N_CS : 1
|
||||
mesh_into : 'leo'
|
||||
save : True
|
||||
savepath : '/home/yeye/Desktop/PhD/AORTA/DATA/maxpv/Ucoarse_test/'
|
||||
infile_dp : '/home/yeye/Desktop/dP/input/all_points.yaml'
|
||||
|
||||
change_mesh:
|
||||
apply: false
|
||||
mode: 'u'
|
||||
dt: 0.005
|
||||
checkpoint_path: '/home/yeye/Desktop/R1/checkpoint/'
|
||||
under_rate: 1
|
||||
mesh_in: '/home/yeye/Desktop/PhD/AORTA/MESH/coaorta/H1/coaortaH1.h5'
|
||||
mesh_out: '/home/yeye/Desktop/meshes/leo_1.42.h5'
|
||||
savepath: '/home/yeye/Desktop/test/'
|
||||
xdmf: True
|
||||
|
||||
SENSE:
|
||||
apply: False
|
||||
R: [2]
|
||||
VENC: 250
|
||||
Mpath: '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/MAG/MG.npz'
|
||||
savepath: '/home/yeye/Desktop/PhD/AORTA/DATA/sequences/MAG/MG_sR2.npz'
|
||||
|
||||
create_leo:
|
||||
apply: false
|
||||
velseq: '/home/yeye/Desktop/Corrector_2019/Second/Vol2/dicom/mod_nocoro/u_R1.mat'
|
||||
resol: [0.09,0.09,0.09]
|
||||
ranges: {'x': [10.8,21] , 'y': [13,19] , 'z': [-0.1,11.5] }
|
||||
masked: false
|
||||
segmentation: '/home/yeye/Desktop/PhD/MEDICAL_DATA/Phantom/With_AoCo_9mm/MATLAB_FILES/Segmented_Aorta.mat'
|
||||
outpath: '/home/yeye/Desktop/PhD/PROGRAMS/LEO_matlab/LEO_files/'
|
||||
|
||||
kspace_cib:
|
||||
apply : False
|
||||
kspace : '/home/yeye/Desktop/Kspaces/9mmRest_2.5/k_space.mat'
|
||||
VENC : 320
|
||||
output : '/home/yeye/Desktop/FFE_PCA.mat'
|
||||
|
||||
CIBtoH5:
|
||||
apply: false
|
||||
data_path: '/home/yeye/Desktop/PhD/MEDICAL_DATA/AoCo/9AoCoPhantomRest0.9/'
|
||||
interpolate: true
|
||||
flip: false
|
||||
dt: 0.03072
|
||||
mesh_path: '/home/yeye/Desktop/PhD/MEDICAL_DATA/AoCo/9AoCoPhantomRest1.4/'
|
||||
times: [1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25]
|
||||
outpath: '/home/yeye/Desktop/9mmRest1.4/R1/'
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
Loading…
Reference in New Issue
Block a user