Commit Graph
1180 Commits
Author SHA1 Message Date
dr. M.S. (Matthijs) Berends b6211931f8 (v3.0.1.9022) add ceftibuten/avibactam (CTA), kasugamycin (KAS), ostreogrycin (OST), thiostrepton (THS), xeruborbactam (XER), zorbamycin (ZOR) 2026-03-03 15:41:08 +01:00
dr. M.S. (Matthijs) Berends 12cf144b19 (v3.0.1.9021) add guideline to resistance() and susceptibility() 2026-02-12 20:34:06 +01:00
dr. M.S. (Matthijs) Berends 499c830ee7 (v3.0.1.9020) unit test fixes 2026-02-09 13:16:36 +01:00
dr. M.S. (Matthijs) Berends ba4c159154 (v3.0.1.9019) Wildtype/Non-wildtype support, and start with interpretive_rules()
Fixes #246
Fixes #254
Fixes #255
Fixes #256
2026-02-08 23:15:40 +01:00
dr. M.S. (Matthijs) Berends 2df2911cf4 (v3.0.1.9018) fixes #249
updates AB groups
2026-01-16 10:57:03 +01:00
dr. M.S. (Matthijs) Berends fd50c51543 (v3.0.1.9017) fix documentation 2026-01-08 14:03:02 +01:00
dr. M.S. (Matthijs) Berends 7df28bce28 (v3.0.1.9015) fix translations 2026-01-08 10:21:48 +01:00
dr. M.S. (Matthijs) Berends 7b9c151241 (v3.0.1.9014) try-again fix 2026-01-07 15:10:21 +01:00
dr. M.S. (Matthijs) Berends 85e8e814e8 (v3.0.1.9013) fix translations 2026-01-07 13:30:54 +01:00
dr. M.S. (Matthijs) Berends fa827f27f4 (v3.0.1.9012) fix translations 2026-01-07 11:00:58 +01:00
dr. M.S. (Matthijs) Berends cfbbfb4fa5 (v3.0.1.9007) fix #246 2026-01-06 23:08:50 +01:00
dr. M.S. (Matthijs) Berends 151af21f38 (v3.0.1.9005) re-add tidymodels implementation 2025-12-21 12:19:43 +01:00
dr. M.S. (Matthijs) Berends 225c73f7e7 (v3.0.1.9004) Revamp as.sir() interpretation for capped MICs
Fixes #243
Fixes #244
2025-12-15 13:18:13 +01:00
dr. M.S. (Matthijs) Berends ba30b08f76 (v3.0.1.9003) Add taniborbactam and cefepime/taniborbactam 2025-11-24 11:24:02 +01:00
dr. M.S. (Matthijs) Berends 0b24967b23 (v3.0.1.9001) fix antibiogram 2025-09-30 10:54:07 +02:00
dr. M.S. (Matthijs) Berends adee419f1c v3.0.1 2025-09-20 17:14:07 +01:00
dr. M.S. (Matthijs) Berends 33fb1849eb (v3.0.0.9036) Prepare for v3.0.1 2025-09-19 12:23:59 +01:00
dr. M.S. (Matthijs) Berends 10ba36821e (v3.0.0.9034) fix MycoBank synonyms 2025-09-18 13:58:34 +01:00
dr. M.S. (Matthijs) Berends e8c99f2775 (v3.0.0.9031) fix for ggplot2 2025-09-12 16:52:59 +02:00
dr. M.S. (Matthijs) Berends c7b2acbeb6 (v3.0.0.9029) fix for vignette and envir data 2025-09-10 16:19:30 +02:00
dr. M.S. (Matthijs) Berends 1922fb5ff2 (v3.0.0.9028) fix as.ab() warning 2025-09-10 15:06:51 +02:00
dr. M.S. (Matthijs) Berends 4d7c4ca52c (v3.0.0.9027) skimr update and as.ab warning - fixes #234, fixes #232 2025-09-10 13:32:52 +02:00
dr. M.S. (Matthijs) Berends 3ba1b8a10a (v3.0.0.9022) postpone new features - we like a clearly focussed bugfix release first 2025-09-03 15:39:44 +02:00
dr. M.S. (Matthijs) Berends 60bd631e1a (v3.0.0.9019) Fixes #229, #230, #227, #225 2025-09-01 16:56:55 +02:00
dr. M.S. (Matthijs) Berends 9b07a8573a (v3.0.0.9018) keep all reasons in mdro(), fixed #227 2025-08-07 16:23:47 +02:00
dr. M.S. (Matthijs) Berends 2f866985c9 (v3.0.0.9016) fix for plotting 2025-07-23 22:05:20 +02:00
RUG 6cb724a208 (v3.0.0.9015) plotting fix 2025-07-19 14:06:36 +02:00
dr. M.S. (Matthijs) Berends 49274f010b (v3.0.0.9014) fix plot colours 2025-07-18 15:57:48 +02:00
dr. M.S. (Matthijs) Berends 39ea5f6597 (v3.0.0.9011) allow names for age_groups() 2025-07-17 19:32:46 +02:00
dr. M.S. (Matthijs) Berends 65ec098acf (v3.0.0.9010) in as.sir(), add note when higher taxonomic levels are used 2025-07-17 19:06:12 +02:00
Nick Thomson e9e3de4469 (v3.0.0.9009) fix as.sir when uti = FALSE 2025-07-17 17:15:52 +02:00
dr. M.S. (Matthijs) Berends d94bdd2c6a (v3.0.0.9008) fix ggplot_sir(), support lighter green for SDD 2025-07-17 17:05:41 +02:00
dr. M.S. (Matthijs) Berends 8dab0a3730 (v3.0.0.9007) allow any tidyselect language in as.sir() 2025-07-17 14:29:35 +02:00
dr. M.S. (Matthijs) Berends 8fd8ee508f (v3.0.0.9004) random mic fix 2025-06-13 16:12:28 +02:00
dr. M.S. (Matthijs) Berends 72db2b2562 (v3.0.0.9003) eucast_rules fix, new tidymodels integration 2025-06-13 14:03:21 +02:00
dr. M.S. (Matthijs) Berends 3742e9e994 (v3.0.0.9002) website version nr 2025-06-06 09:37:25 +02:00
dr. M.S. (Matthijs) Berends 753f0e1ef9 (v3.0.0.9001) the first fixes 2025-06-04 13:10:20 +02:00
dr. M.S. (Matthijs) Berends 1710e220dd AMR v3.0\! 2025-06-02 12:11:00 +02:00
dr. M.S. (Matthijs) Berends 79038fed21 (v2.1.1.9290) typo 2025-06-01 16:07:38 +02:00
dr. M.S. (Matthijs) Berends d384b492cf (v2.1.1.9289) unit test fix 2025-06-01 16:00:12 +02:00
dr. M.S. (Matthijs) Berends 46f80b1378 (v2.1.1.9288) mdro fix 2025-06-01 15:35:04 +02:00
dr. M.S. (Matthijs) Berends 5667ce3eae (v2.1.1.9287) fix antibiotics 2025-06-01 12:17:47 +02:00
dr. M.S. (Matthijs) Berends e70f3de02e (v2.1.1.9286) deprecate antibiotics better, add ATC for ceftaroline 2025-06-01 11:54:40 +02:00
dr. M.S. (Matthijs) Berends 80f08f91da (v2.1.1.9285) mdro fix 2025-05-21 16:51:40 +02:00
dr. M.S. (Matthijs) Berends a94452b9be (v2.1.1.9281) speed improvement is_sir_eligible 2025-05-20 11:31:42 +02:00
dr. M.S. (Matthijs) Berends 38cebc1541 (v2.1.1.9279) fix documentation, add foreign S3 exports to functions 2025-05-16 16:55:29 +02:00
dr. M.S. (Matthijs) Berends 139f79d372 (v2.1.1.9278) support AMR selectors in custom MDRO guideline 2025-05-16 11:20:19 +02:00
dr. M.S. (Matthijs) Berends b8d7c8af7f (v2.1.1.9277) mdro fix 2025-05-15 13:07:47 +02:00
dr. M.S. (Matthijs) Berends 4b171745de (v2.1.1.9276) mdro() fix 2025-05-15 10:39:48 +02:00
dr. M.S. (Matthijs) Berends 48a59ee31a (v2.1.1.9275) include guideline name in MDRO verbose output 2025-05-13 18:56:12 +02:00