1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-27 06:06:12 +01:00
Commit Graph

184 Commits

Author SHA1 Message Date
d9e66fb118 (v2.1.1.9056) example fix 2024-06-17 14:52:18 +02:00
2dee1d71dc (v2.1.1.9053) add verbose to as.sir(), unit test fix 2024-06-17 10:38:45 +02:00
68f7795481 (v2.1.1.9052) unit test fix 2024-06-16 20:53:50 +02:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N 2024-06-14 22:39:01 +02:00
de17de1be9 (v2.1.1.9048) vctrs update for sir 2024-06-13 20:55:17 +02:00
3179216c81 (v2.1.1.9047) unit test and index 2024-06-13 07:37:53 +02:00
cd1b37ff69 (v2.1.1.9046) unit test fix 2024-06-12 14:37:44 +02:00
c753afcd76 (v2.1.1.9045) fix host in animal guidelines 2024-06-12 10:32:43 +02:00
3a54711dfe (v2.1.1.9044) update website 2024-06-10 15:10:54 +02:00
31207952d3 (v2.1.1.9043) fix sir translation with as.double 2024-06-10 10:34:45 +02:00
60c6c21e45 fix SIR interpretation 2024-05-31 09:50:54 +02:00
d214f74e25 allow column name for ab in as.sir() 2024-05-20 21:29:13 +02:00
08a27922a8 new SDD and N for as.sir() 2024-05-20 15:27:04 +02:00
25089e811e correct for high-level abx 2024-04-24 09:50:32 +02:00
2899b3c840 new mo_group_members() 2024-04-19 10:18:21 +02:00
0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
4170def0ec unit test 2024-03-09 16:46:59 +01:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
Emil Rossing
74ea6c8c60
Added support for 'html' in italicize_taxonomy() (#134) 2024-02-13 13:47:07 +01:00
7059568581 fix scale functions 2023-12-03 16:51:54 +01:00
ca72a646d0 scientific notation for MICs 2023-10-20 15:45:00 +02:00
bcab4bc9ba Fixes #123 2023-10-20 15:07:11 +02:00
7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
fd480d1a9a console hyperlink fix 2023-07-14 09:50:13 +02:00
8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
dab20c09f6 unit test 2023-07-10 18:30:26 +02:00
70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
e1966503ee unit testing R4.3 2023-05-26 20:37:00 +02:00
8179092c57 add XPT files for SAS software 2023-05-12 10:07:55 +02:00
91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
9de19fdc49 documentation 2023-04-21 10:07:25 +02:00
ad3061c754 unit test 2023-04-15 10:32:37 +02:00
1a02d302d4 Fix translatable strings 2023-04-15 09:32:13 +02:00
1d3d7d40bc get episode unit tests 2023-02-24 19:54:56 +01:00
8d902410f9 unit tests 2023-02-18 14:56:06 +01:00
8d37c75860 unit tests 2023-02-14 15:59:40 +01:00
a4cd38c433 fix for R < 3.2, expect_warning() on hold 2023-02-14 10:41:01 +01:00
b6d2b1398d Fix for antibiogram() in R <=3.4 2023-02-13 10:21:43 +01:00
45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
03294c7901 fix for Salmonella group A, unit tests 2023-02-10 16:47:25 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
70a7ba0206 fix first isolate 2023-02-10 13:13:17 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
822e9de82c pm update, unit test fix? 2023-02-08 13:48:06 +01:00
75a4c1ef3e fixes2 2023-02-06 14:34:38 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
4b133d4c96 unit tests 2023-01-30 17:24:03 +01:00