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d214f74e25
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allow column name for ab in as.sir()
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2024-05-20 21:29:13 +02:00 |
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fc269e667d
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unit test fix
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2024-05-20 18:58:35 +02:00 |
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08a27922a8
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new SDD and N for as.sir()
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2024-05-20 15:27:04 +02:00 |
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b68f47d985
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improved algorithm of as.ab()
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2024-05-12 16:24:44 +02:00 |
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1bce7ed3d3
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fix git hooks
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2024-04-24 11:58:16 +02:00 |
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7f18e66c4e
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unit test fix
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2024-04-24 11:42:43 +02:00 |
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3e5c7d45c6
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update intro logo
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2024-04-24 09:58:24 +02:00 |
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25089e811e
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correct for high-level abx
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2024-04-24 09:50:32 +02:00 |
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0d8a91db49
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rename pre-commit hook to pre-commit checks (no-check)
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2024-04-23 10:55:48 +02:00 |
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35f095cceb
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fixes #148
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2024-04-23 09:34:05 +02:00 |
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2899b3c840
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new mo_group_members()
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2024-04-19 10:18:21 +02:00 |
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94e9a4d99b
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update MIC implementation
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2024-04-07 20:22:59 +02:00 |
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0039cb05d6
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update MIC comparisons
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2024-04-05 16:44:43 +02:00 |
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bc4f8515e2
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new Norwegian link
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2024-03-03 23:24:57 +01:00 |
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f2d245b0cb
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update navbar colours
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2024-03-03 19:07:09 +01:00 |
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b303662ec6
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fix veterinary for R<4
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2024-02-24 19:26:35 +01:00 |
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35963ca3dc
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vctrs fix
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2024-02-24 18:51:37 +01:00 |
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4aa5413641
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fix unit test
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2024-02-24 18:14:50 +01:00 |
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7be4dabbc0
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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Emil Rossing
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74ea6c8c60
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Added support for 'html' in italicize_taxonomy() (#134)
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2024-02-13 13:47:07 +01:00 |
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83e92fd88c
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docu fix
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2023-12-04 08:19:02 +01:00 |
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7059568581
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fix scale functions
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2023-12-03 16:51:54 +01:00 |
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c7461766ce
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Remove RSI from package, add extra MIC scale functions
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2023-12-03 11:34:48 +01:00 |
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6f417d0ef2
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add scale_x_mic()
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2023-12-03 01:06:00 +01:00 |
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4c11a7bd9c
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v2.1.1
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2023-10-22 15:51:27 +02:00 |
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ca72a646d0
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scientific notation for MICs
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2023-10-20 15:45:00 +02:00 |
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7cda9e575b
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prepare for CRAN
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2023-10-20 14:51:48 +02:00 |
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7dc96794be
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fix rounding MICs on R-devel
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2023-07-20 08:24:27 +02:00 |
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7a4628b73f
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Added C. freundii complex and Y. pseudotuberculosis complex
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2023-07-14 10:49:06 +02:00 |
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fd480d1a9a
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console hyperlink fix
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2023-07-14 09:50:13 +02:00 |
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eff164ecb1
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indicate unique identifiers
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2023-07-12 21:26:32 +02:00 |
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ea2a4652e9
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mouse-hover fixes
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2023-07-12 15:27:43 +01:00 |
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e1b4f99f4f
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breakpoints fixes
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2023-07-12 15:20:04 +01:00 |
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0c46f61260
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MO group fixes
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2023-07-12 15:04:48 +01:00 |
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7cd9ca274c
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add strep groups to ABCG
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2023-07-12 11:41:25 +01:00 |
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66eeeb4b88
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cleanup
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2023-07-11 14:29:40 +02:00 |
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8df1cd8d97
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interpretation fixes
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2023-07-11 09:50:45 +02:00 |
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dab20c09f6
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unit test
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2023-07-10 18:30:26 +02:00 |
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1b499bf012
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fixes
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2023-07-10 17:02:28 +02:00 |
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a4e2e25e3f
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reftbl in plots, speedup for as.sir() and mo_validate
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2023-07-10 16:43:46 +02:00 |
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70c601ca11
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breakpoints UTI interpretation fix
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2023-07-10 13:41:52 +02:00 |
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3829311dd3
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random() fix
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2023-07-08 21:00:49 +02:00 |
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acb534102b
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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2d97cca6d9
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fix reference_df endless loop
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2023-06-26 13:52:02 +02:00 |
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1d9ee39cc7
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fix for mo codes
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2023-06-22 15:24:18 +02:00 |
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Dr. Matthijs Berends
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f065945d7b
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Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
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2023-06-22 15:10:59 +02:00 |
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9591688811
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documentation update
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2023-05-27 10:39:22 +02:00 |
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e1966503ee
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unit testing R4.3
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2023-05-26 20:37:00 +02:00 |
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766db4e21f
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as.mo fix
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2023-05-26 19:20:21 +02:00 |
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c6135d2082
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updated microorganism codes
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2023-05-26 16:10:01 +02:00 |
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0bcf55d3b6
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improve as.mo()
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2023-05-24 15:55:53 +02:00 |
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3018fb87a9
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icu_exclude in first_isolate(), fixes #110
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2023-05-17 22:12:10 +02:00 |
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91fa73dedf
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add oxygen tolerance
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2023-05-11 21:56:27 +02:00 |
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bf08d136a0
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fix coercing NA to custom codes, fixes #107
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2023-05-08 13:04:18 +02:00 |
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9148a2dcf4
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fix mo_rank() for 'unknown' MOs
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2023-04-20 15:20:41 +02:00 |
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cabffb22fd
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anaerobic codes
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2023-04-17 11:26:19 +02:00 |
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1a02d302d4
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Fix translatable strings
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2023-04-15 09:32:13 +02:00 |
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ed70f95380
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Fix clinical breakpoints
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2023-04-14 23:14:34 +02:00 |
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147f9112e9
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Fix some WHONET codes
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2023-04-14 11:12:26 +02:00 |
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549790c2a6
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website
|
2023-03-20 21:59:50 +01:00 |
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c28cfa3a77
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fix documentation
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2023-03-16 08:55:37 +01:00 |
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dd7cc86485
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help page %like%
|
2023-03-14 19:49:50 +01:00 |
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80cfc503c2
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check for 2.0
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2023-03-12 13:02:37 +01:00 |
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9179e98e12
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patient ID in first isolate
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2023-03-11 17:13:19 +01:00 |
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7ad8635994
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documentation for 'data.table' AB selectors
|
2023-03-11 16:54:02 +01:00 |
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45e840c02f
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update NEWS
|
2023-03-11 14:43:31 +01:00 |
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262598b8d7
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support for old rsi arguments
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2023-03-11 14:24:34 +01:00 |
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4416394e10
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website update
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2023-02-26 21:26:58 +01:00 |
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1d3d7d40bc
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get episode unit tests
|
2023-02-24 19:54:56 +01:00 |
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2c5a9bb622
|
new relative episode determination in get_episode(), fix for plotting disk/MIC values
|
2023-02-24 17:06:30 +01:00 |
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92029c9e95
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remove note
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2023-02-24 10:31:36 +01:00 |
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049baf0a71
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fix for antibiograms on R < 3.5
|
2023-02-24 09:43:10 +01:00 |
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e70f2cd32c
|
knitr format
|
2023-02-23 16:27:40 +01:00 |
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a84101db08
|
N for only 1 AB in
|
2023-02-22 16:26:13 +01:00 |
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551aaf6517
|
auto-remove missing ABs in antibiogram()
|
2023-02-22 16:00:52 +01:00 |
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c2cfc5ef84
|
fix for antibiogram(), transform WHONET data set to sir
|
2023-02-22 15:40:05 +01:00 |
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dad25302f2
|
make rsi work in more cases, documentation update
|
2023-02-22 14:38:57 +01:00 |
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8d902410f9
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unit tests
|
2023-02-18 14:56:06 +01:00 |
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8dcf101a9c
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website
|
2023-02-18 13:08:08 +01:00 |
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ba255ddb00
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website
|
2023-02-18 11:57:17 +01:00 |
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e890360986
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website syntax update
|
2023-02-17 11:39:00 +01:00 |
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714a048fa9
|
italicise antibiogram
|
2023-02-17 09:42:51 +01:00 |
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db2830124f
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fix for using dplyr::select()
|
2023-02-15 19:48:34 +01:00 |
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a82552dd88
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fix for group selections
|
2023-02-15 17:37:49 +01:00 |
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ef716f6ee3
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doc fix
|
2023-02-15 17:16:40 +01:00 |
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6016547f1f
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support for dplyr 1.1.0
|
2023-02-15 17:02:10 +01:00 |
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a4cd38c433
|
fix for R < 3.2, expect_warning() on hold
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2023-02-14 10:41:01 +01:00 |
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3396236eef
|
unit test fixes
|
2023-02-13 16:56:25 +01:00 |
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b6d2b1398d
|
Fix for antibiogram() in R <=3.4
|
2023-02-13 10:21:43 +01:00 |
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45a9697c84
|
unit tests
|
2023-02-12 17:10:48 +01:00 |
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68abb00c59
|
add include_screening to as.sir()
|
2023-02-12 15:09:54 +01:00 |
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c740967cf2
|
fix for binding rows
|
2023-02-12 11:20:14 +01:00 |
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c51fb24363
|
pm_bind_rows
|
2023-02-11 22:28:48 +01:00 |
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b146de6d7f
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fix for bind_rows2, added 4 langs
|
2023-02-11 21:57:12 +01:00 |
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2007c3eef3
|
bind_rows
|
2023-02-10 17:09:48 +01:00 |
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03294c7901
|
fix for Salmonella group A, unit tests
|
2023-02-10 16:47:25 +01:00 |
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bc434db835
|
bring back antibiogram(), without deps
|
2023-02-10 16:18:00 +01:00 |
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70a7ba0206
|
fix first isolate
|
2023-02-10 13:13:17 +01:00 |
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1a0dc4bf46
|
revert back to pre-antibiogram
|
2023-02-09 13:07:39 +01:00 |
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aa48c6bf53
|
pm fixes
|
2023-02-08 16:51:41 +01:00 |
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