Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends
f0a2cdbf5e
update mo algorithm
2022-12-20 16:14:04 +01:00
dr. M.S. (Matthijs) Berends
b1b7534c78
incorporate Bartlett et al (2022)
2022-12-19 15:32:41 +01:00
dr. M.S. (Matthijs) Berends
23fe427cbc
Fixes for Salmonella
2022-12-17 14:31:33 +01:00
dr. M.S. (Matthijs) Berends
5f3a7694aa
microorganisms update, added Salmonella groups
2022-12-16 16:10:43 +01:00
dr. M.S. (Matthijs) Berends
8da2467209
updated taxonomy
2022-12-12 00:14:56 +01:00
dr. M.S. (Matthijs) Berends
56dad34e68
update prevalence with new phyla
2022-12-09 13:37:08 +01:00
dr. M.S. (Matthijs) Berends
f6862a139d
expert rules 12.0
2022-11-14 15:20:39 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support ( #77 )
2022-11-13 08:46:10 +01:00
dr. M.S. (Matthijs) Berends
796b972f8a
extend vctrs support
2022-10-31 11:19:06 +01:00
dr. M.S. (Matthijs) Berends
9444ed6d1d
fix antibiotics error
2022-10-30 21:05:46 +01:00
dr. M.S. (Matthijs) Berends
d40e0ef20b
completely updated antibiotics
2022-10-30 14:31:45 +01:00
dr. M.S. (Matthijs) Berends
3d9faf89cf
ATC and DDD update
2022-10-29 19:01:23 +02:00
dr. M.S. (Matthijs) Berends
6ad7857d39
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
dr. M.S. (Matthijs) Berends
c2801ba7a1
new rsi_translation
2022-10-22 22:00:15 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends
71db246d5c
unit test fix
2022-08-28 19:17:12 +02:00
dr. M.S. (Matthijs) Berends
303d61b473
new tibble export
2022-08-27 20:49:37 +02:00
dr. M.S. (Matthijs) Berends
952d16de33
new, automated website
2022-08-21 16:37:20 +02:00
dr. M.S. (Matthijs) Berends
3f2f60ab77
language updates
2022-08-19 12:33:14 +02:00
dr. M.S. (Matthijs) Berends
ab97268f4c
(v1.8.1.9014) add Toxoplasma
2022-08-12 23:27:15 +02:00
dr. M.S. (Matthijs) Berends
7f981e7778
(v1.8.1.9013) add Toxoplasma
2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends
b84d647cac
(v1.8.1.9012) update prevalence of some genera
2022-06-03 13:28:55 +02:00
dr. M.S. (Matthijs) Berends
859224e9d0
(v1.8.1.9006) added EUCAST 2022 and CLSI 2022
2022-05-10 21:34:30 +02:00
dr. M.S. (Matthijs) Berends
680e8e7a41
(v1.8.1.9005) as.rsi() fix for EUCAST
2022-05-10 17:01:37 +02:00
dr. M.S. (Matthijs) Berends
76dee66852
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
dr. M.S. (Matthijs) Berends
bd4bb1d72f
(v1.7.1.9073) as.rsi() fix for UTIs
2021-12-14 21:47:14 +01:00
dr. M.S. (Matthijs) Berends
0cbf8f48b6
(v1.7.1.9071) rsi disk fix
2021-12-13 11:57:34 +01:00
dr. M.S. (Matthijs) Berends
578e7dfee9
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends
f90e27c1b0
(v1.7.1.9069) CLSI 2021 support
2021-12-12 11:36:58 +01:00
dr. M.S. (Matthijs) Berends
77ba4318ea
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends
5375f75829
(v1.7.1.9056) unit tests
2021-11-29 11:55:18 +01:00
dr. M.S. (Matthijs) Berends
c8698347cb
(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
2021-11-29 10:38:38 +01:00
dr. M.S. (Matthijs) Berends
694cf5ba77
(v1.7.1.9054) mdro() update - fixes #49 , first_isolate() speedup
2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends
37e6e35ec4
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends
8f5e5a3fc2
(v1.7.1.9050) fix for as.mo
2021-10-05 14:00:35 +02:00
dr. M.S. (Matthijs) Berends
2ab21b7af3
(v1.7.1.9026) updated DDDs
2021-08-19 23:43:02 +02:00
dr. M.S. (Matthijs) Berends
a2d249962f
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
2021-08-16 21:54:34 +02:00
dr. M.S. (Matthijs) Berends
fc946564d1
(v1.7.1.9019) Morganella MIC in EUCAST 2021
2021-07-12 12:28:41 +02:00
dr. M.S. (Matthijs) Berends
95050ee3e0
(v1.7.1.9007) Updated antibiotics dataset, fixes #41
2021-06-23 10:03:17 +02:00
dr. M.S. (Matthijs) Berends
279376fccb
(v1.7.0.9002) old MO codes
2021-06-01 16:36:33 +02:00
dr. M.S. (Matthijs) Berends
bef0f42f66
(v1.7.0.9001) CLSI 2020 guideline
2021-06-01 15:33:06 +02:00
dr. M.S. (Matthijs) Berends
5679ccdaf9
(v1.6.0.9017) extra system codes
2021-05-04 12:47:33 +02:00
dr. M.S. (Matthijs) Berends
7a3139f7cc
(v1.6.0.9000) custom EUCAST rules
2021-04-07 08:37:42 +02:00
dr. M.S. (Matthijs) Berends
4e0a9533ad
(v1.5.0.9041) SNOMED update
2021-03-11 21:42:30 +01:00
dr. M.S. (Matthijs) Berends
0d29bde693
(v1.5.0.9030) as.ab() speed improvement
2021-03-05 10:32:09 +01:00
dr. M.S. (Matthijs) Berends
0e0e3c4ffa
(v1.5.0.9029) added missing families and orders
2021-03-05 01:31:46 +01:00
dr. M.S. (Matthijs) Berends
ddf88345f1
(v1.5.0.9028) Updated taxonomy until March 2021
2021-03-04 23:28:32 +01:00
dr. M.S. (Matthijs) Berends
4a84894f79
(v1.5.0.9016) only_rsi_columns update, documentation
2021-02-08 14:18:42 +01:00
dr. M.S. (Matthijs) Berends
24eb4453db
(v1.5.0.9011) small dosage update
2021-01-24 23:27:11 +01:00
