dr. M.S. (Matthijs) Berends
e890360986
website syntax update
2023-02-17 11:39:00 +01:00
dr. M.S. (Matthijs) Berends
714a048fa9
italicise antibiogram
2023-02-17 09:42:51 +01:00
dr. M.S. (Matthijs) Berends
ef716f6ee3
doc fix
2023-02-15 17:16:40 +01:00
dr. M.S. (Matthijs) Berends
3396236eef
unit test fixes
2023-02-13 16:56:25 +01:00
dr. M.S. (Matthijs) Berends
b6d2b1398d
Fix for antibiogram() in R <=3.4
2023-02-13 10:21:43 +01:00
dr. M.S. (Matthijs) Berends
45a9697c84
unit tests
2023-02-12 17:10:48 +01:00
dr. M.S. (Matthijs) Berends
68abb00c59
add include_screening to as.sir()
2023-02-12 15:09:54 +01:00
dr. M.S. (Matthijs) Berends
b146de6d7f
fix for bind_rows2, added 4 langs
2023-02-11 21:57:12 +01:00
dr. M.S. (Matthijs) Berends
03294c7901
fix for Salmonella group A, unit tests
2023-02-10 16:47:25 +01:00
dr. M.S. (Matthijs) Berends
bc434db835
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
dr. M.S. (Matthijs) Berends
70a7ba0206
fix first isolate
2023-02-10 13:13:17 +01:00
dr. M.S. (Matthijs) Berends
1a0dc4bf46
revert back to pre-antibiogram
2023-02-09 13:07:39 +01:00
dr. M.S. (Matthijs) Berends
aa48c6bf53
pm fixes
2023-02-08 16:51:41 +01:00
dr. M.S. (Matthijs) Berends
f7dd890b79
fixes
2023-02-06 12:38:52 +01:00
dr. M.S. (Matthijs) Berends
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
dr. M.S. (Matthijs) Berends
4b133d4c96
unit tests
2023-01-30 17:24:03 +01:00
dr. M.S. (Matthijs) Berends
830c67f1bf
documentation, unit tests
2023-01-24 10:20:27 +01:00
dr. M.S. (Matthijs) Berends
eef00069fd
add all options to documentation
2023-01-23 20:07:57 +01:00
dr. M.S. (Matthijs) Berends
19fd0ef121
sort sir history
2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends
593d740b84
documentation, file permissions
2023-01-19 12:54:53 +01:00
dr. M.S. (Matthijs) Berends
b94bc6c67b
adding mo fixes
2023-01-14 19:50:25 +01:00
dr. M.S. (Matthijs) Berends
ca79068604
Fix for adding MO's
2023-01-14 17:10:10 +01:00
dr. M.S. (Matthijs) Berends
33f269e2f4
contrib update
2023-01-12 23:16:05 +01:00
dr. M.S. (Matthijs) Berends
1029aa2fdc
algorithm improvement
2023-01-07 14:53:14 +01:00
dr. M.S. (Matthijs) Berends
08fe5a88c0
documentation
2023-01-07 01:54:46 +01:00
dr. M.S. (Matthijs) Berends
2375bfdcb5
documentation
2023-01-07 01:51:19 +01:00
dr. M.S. (Matthijs) Berends
84ed8c32bb
documentation
2023-01-06 19:21:04 +01:00
dr. M.S. (Matthijs) Berends
86e28bafce
add mo_pathogenicity
2023-01-06 13:35:37 +01:00
dr. M.S. (Matthijs) Berends
268ec31d92
unit tests
2023-01-05 18:21:48 +01:00
dr. M.S. (Matthijs) Berends
a98d0d75ea
styler dep
2023-01-05 14:46:44 +01:00
dr. M.S. (Matthijs) Berends
77d9cf1936
documentation
2022-12-30 13:02:37 +01:00
dr. M.S. (Matthijs) Berends
61c0bdb7af
documentation
2022-12-28 15:04:59 +01:00
dr. M.S. (Matthijs) Berends
ba3b237bdf
custom mo update
2022-12-28 14:20:10 +01:00
dr. M.S. (Matthijs) Berends
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
dr. M.S. (Matthijs) Berends
f0a2cdbf5e
update mo algorithm
2022-12-20 16:14:04 +01:00
dr. M.S. (Matthijs) Berends
b1b7534c78
incorporate Bartlett et al (2022)
2022-12-19 15:32:41 +01:00
dr. M.S. (Matthijs) Berends
23fe427cbc
Fixes for Salmonella
2022-12-17 14:31:33 +01:00
dr. M.S. (Matthijs) Berends
5f3a7694aa
microorganisms update, added Salmonella groups
2022-12-16 16:10:43 +01:00
dr. M.S. (Matthijs) Berends
8da2467209
updated taxonomy
2022-12-12 00:14:56 +01:00
dr. M.S. (Matthijs) Berends
eed1c14b96
website update
2022-12-11 11:44:29 +01:00
dr. M.S. (Matthijs) Berends
b1ead9c0fe
doc update
2022-12-10 10:09:57 +01:00
dr. M.S. (Matthijs) Berends
56dad34e68
update prevalence with new phyla
2022-12-09 13:37:08 +01:00
dr. M.S. (Matthijs) Berends
510140fc55
Updated mo_gramstain() to reflect current taxonomy, fixes #83
2022-12-09 10:30:25 +01:00
dr. M.S. (Matthijs) Berends
31fb81c382
revised as.rsi(), fix for mdro()
2022-11-24 20:29:00 +01:00
dr. M.S. (Matthijs) Berends
f6862a139d
expert rules 12.0
2022-11-14 15:20:39 +01:00
dr. M.S. (Matthijs) Berends
7ca44fb756
cleanup and new intro logo
2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support ( #77 )
2022-11-13 08:46:10 +01:00
dr. M.S. (Matthijs) Berends
2d90218305
documentation fix
2022-11-05 12:06:40 +01:00
dr. M.S. (Matthijs) Berends
8dc94a9eda
documentation fix
2022-11-05 09:31:19 +01:00
