dr. M.S. (Matthijs) Berends
225493192c
(v3.0.1.9043) fix unit test
2026-04-02 12:24:12 +02:00
dr. M.S. (Matthijs) Berends
26613d774b
(v3.0.1.9042) add EUCAST breakpoint table v16 to interpretive_rules()
2026-04-02 11:42:19 +02:00
dr. M.S. (Matthijs) Berends
3a736bc484
(v3.0.1.9041) add breakpoints 2026
2026-03-30 10:01:49 +02:00
dr. M.S. (Matthijs) Berends
9c95aa455c
(v3.0.1.9040) fix MIC plotting
2026-03-24 12:44:47 +01:00
dr. M.S. (Matthijs) Berends
2a8a1eda97
(v3.0.1.9039) cli fixes
2026-03-23 10:38:28 +01:00
dr. M.S. (Matthijs) Berends
3d1412e8c9
(v3.0.1.9037) improve cli messages
2026-03-22 20:44:37 +01:00
dr. M.S. (Matthijs) Berends
8439e9c1d2
(v3.0.1.9035) fix loading in Positron
2026-03-18 10:32:11 +01:00
dr. M.S. (Matthijs) Berends
4dc3ec0008
(v3.0.1.9034) Add amr_course()
2026-03-11 16:07:31 +01:00
dr. M.S. (Matthijs) Berends
353eaa3f38
(v3.0.1.9033) add ionophores(), clorobiocin, aminocoumarins group
2026-03-09 11:57:36 +01:00
dr. M.S. (Matthijs) Berends
cba315c2e7
(v3.0.1.9032) fix unit tests
2026-03-08 20:36:15 +01:00
dr. M.S. (Matthijs) Berends
b6f8584994
(v3.0.1.9031) fix MDRO for non-RStudio terminal
2026-03-08 11:30:18 +01:00
dr. M.S. (Matthijs) Berends
e2102c081a
(v3.0.1.9030) fix R 3.6
2026-03-07 18:07:24 +01:00
dr. M.S. (Matthijs) Berends
daab605ca4
(v3.0.1.9028) fix unique CIDs
2026-03-06 18:53:42 +01:00
dr. M.S. (Matthijs) Berends
c0a394008e
(v3.0.1.9027) Fixes #252 and add documentation update regarding #253
2026-03-06 13:10:33 +01:00
dr. M.S. (Matthijs) Berends
60e8f2bae6
(v3.0.1.9026) fix ab_group(NA)
2026-03-06 12:41:27 +01:00
dr. M.S. (Matthijs) Berends
0311834035
Merge branch 'main' of https://github.com/msberends/AMR
2026-03-03 15:44:34 +01:00
dr. M.S. (Matthijs) Berends
b6211931f8
(v3.0.1.9022) add ceftibuten/avibactam (CTA), kasugamycin (KAS), ostreogrycin (OST), thiostrepton (THS), xeruborbactam (XER), zorbamycin (ZOR)
2026-03-03 15:41:08 +01:00
dr. M.S. (Matthijs) Berends
12cf144b19
(v3.0.1.9021) add guideline to resistance() and susceptibility()
2026-02-12 20:34:06 +01:00
dr. M.S. (Matthijs) Berends
499c830ee7
(v3.0.1.9020) unit test fixes
2026-02-09 13:16:36 +01:00
dr. M.S. (Matthijs) Berends
ba4c159154
(v3.0.1.9019) Wildtype/Non-wildtype support, and start with interpretive_rules()
...
Fixes #246
Fixes #254
Fixes #255
Fixes #256
2026-02-08 23:15:40 +01:00
dr. M.S. (Matthijs) Berends
2df2911cf4
(v3.0.1.9018) fixes #249
...
updates AB groups
2026-01-16 10:57:03 +01:00
dr. M.S. (Matthijs) Berends
fd50c51543
(v3.0.1.9017) fix documentation
2026-01-08 14:03:02 +01:00
dr. M.S. (Matthijs) Berends
cfd1922dd9
(v3.0.1.9016) fix unit test
2026-01-08 12:29:08 +01:00
dr. M.S. (Matthijs) Berends
7df28bce28
(v3.0.1.9015) fix translations
2026-01-08 10:21:48 +01:00
dr. M.S. (Matthijs) Berends
7b9c151241
(v3.0.1.9014) try-again fix
2026-01-07 15:10:21 +01:00
dr. M.S. (Matthijs) Berends
85e8e814e8
(v3.0.1.9013) fix translations
2026-01-07 13:30:54 +01:00
dr. M.S. (Matthijs) Berends
fa827f27f4
(v3.0.1.9012) fix translations
2026-01-07 11:00:58 +01:00
dr. M.S. (Matthijs) Berends
9d1b4565f6
(v3.0.1.9008) fix #246
...
Merge branch 'main' of https://github.com/msberends/AMR
# Conflicts:
# DESCRIPTION
# NEWS.md
# R/sysdata.rda
# data/antibiotics.rda
2026-01-06 23:11:34 +01:00
dr. M.S. (Matthijs) Berends
cfbbfb4fa5
(v3.0.1.9007) fix #246
2026-01-06 23:08:50 +01:00
dr. M.S. (Matthijs) Berends
f6e28ac95c
(v3.0.1.9006) Fix website
2025-12-21 12:29:46 +01:00
dr. M.S. (Matthijs) Berends
151af21f38
(v3.0.1.9005) re-add tidymodels implementation
2025-12-21 12:19:43 +01:00
dr. M.S. (Matthijs) Berends
225c73f7e7
(v3.0.1.9004) Revamp as.sir() interpretation for capped MICs
...
Fixes #243
Fixes #244
2025-12-15 13:18:13 +01:00
dr. M.S. (Matthijs) Berends
ba30b08f76
(v3.0.1.9003) Add taniborbactam and cefepime/taniborbactam
2025-11-24 11:24:02 +01:00
dr. M.S. (Matthijs) Berends
d366949f1b
(v3.0.1.9002) replace WHONET directives with their GitHub repo
2025-10-13 22:12:48 +02:00
dr. M.S. (Matthijs) Berends
0b24967b23
(v3.0.1.9001) fix antibiogram
2025-09-30 10:54:07 +02:00
dr. M.S. (Matthijs) Berends
adee419f1c
v3.0.1
2025-09-20 17:14:07 +01:00
dr. M.S. (Matthijs) Berends
33fb1849eb
(v3.0.0.9036) Prepare for v3.0.1
2025-09-19 12:23:59 +01:00
dr. M.S. (Matthijs) Berends
13f2a864da
(v3.0.0.9035) fix mo_pathogenicity unit test following MycoBank bugfix
2025-09-18 14:22:52 +01:00
dr. M.S. (Matthijs) Berends
10ba36821e
(v3.0.0.9034) fix MycoBank synonyms
2025-09-18 13:58:34 +01:00
dr. M.S. (Matthijs) Berends
5796e8f3a4
(v3.0.0.9033) rename workflow
2025-09-15 09:10:54 +02:00
dr. M.S. (Matthijs) Berends
b11866af57
(v3.0.0.9032) add GitHub Action for dev version of packages
2025-09-13 14:02:59 +02:00
dr. M.S. (Matthijs) Berends
e8c99f2775
(v3.0.0.9031) fix for ggplot2
2025-09-12 16:52:59 +02:00
dr. M.S. (Matthijs) Berends
5b99888151
(v3.0.0.9030) fix NEWS
2025-09-11 14:41:28 +02:00
dr. M.S. (Matthijs) Berends
c7b2acbeb6
(v3.0.0.9029) fix for vignette and envir data
2025-09-10 16:19:30 +02:00
dr. M.S. (Matthijs) Berends
1922fb5ff2
(v3.0.0.9028) fix as.ab() warning
2025-09-10 15:06:51 +02:00
dr. M.S. (Matthijs) Berends
4d7c4ca52c
(v3.0.0.9027) skimr update and as.ab warning - fixes #234 , fixes #232
2025-09-10 13:32:52 +02:00
dr. M.S. (Matthijs) Berends
d5a568318b
(v3.0.0.9026) fix tidymodels doc
2025-09-04 15:03:28 +02:00
dr. M.S. (Matthijs) Berends
c1c49fa463
(v3.0.0.9025) fix todo tracker
2025-09-04 14:40:24 +02:00
dr. M.S. (Matthijs) Berends
d2ced1db61
(v3.0.0.9024) fix todo tracker
2025-09-04 14:28:01 +02:00
dr. M.S. (Matthijs) Berends
3d40b20c10
(v3.0.0.9023) update todo tracker
2025-09-04 14:04:22 +02:00
dr. M.S. (Matthijs) Berends
3ba1b8a10a
(v3.0.0.9022) postpone new features - we like a clearly focussed bugfix release first
2025-09-03 15:39:44 +02:00
dr. M.S. (Matthijs) Berends
0744c6feee
(v3.0.0.9021) checkouts
2025-09-03 12:12:05 +02:00
dr. M.S. (Matthijs) Berends
eca638529c
new umcg logo and old CHECKOUT update
2025-09-03 11:49:10 +02:00
dr. M.S. (Matthijs) Berends
60bd631e1a
(v3.0.0.9019) Fixes #229 , #230 , #227 , #225
2025-09-01 16:56:55 +02:00
dr. M.S. (Matthijs) Berends
9b07a8573a
(v3.0.0.9018) keep all reasons in mdro(), fixed #227
2025-08-07 16:23:47 +02:00
dr. M.S. (Matthijs) Berends
fc72cf9324
(v3.0.0.9017) semantic versioning only on branch main
2025-07-28 12:24:52 +02:00
dr. M.S. (Matthijs) Berends
2f866985c9
(v3.0.0.9016) fix for plotting
2025-07-23 22:05:20 +02:00
dr. M.S. (Matthijs) Berends
49274f010b
(v3.0.0.9014) fix plot colours
2025-07-18 15:57:48 +02:00
dr. M.S. (Matthijs) Berends
39ea5f6597
(v3.0.0.9011) allow names for age_groups()
2025-07-17 19:32:46 +02:00
dr. M.S. (Matthijs) Berends
65ec098acf
(v3.0.0.9010) in as.sir(), add note when higher taxonomic levels are used
2025-07-17 19:06:12 +02:00
dr. M.S. (Matthijs) Berends
d94bdd2c6a
(v3.0.0.9008) fix ggplot_sir(), support lighter green for SDD
2025-07-17 17:05:41 +02:00
dr. M.S. (Matthijs) Berends
8dab0a3730
(v3.0.0.9007) allow any tidyselect language in as.sir()
2025-07-17 14:29:35 +02:00
dr. M.S. (Matthijs) Berends
8fd8ee508f
(v3.0.0.9004) random mic fix
2025-06-13 16:12:28 +02:00
dr. M.S. (Matthijs) Berends
72db2b2562
(v3.0.0.9003) eucast_rules fix, new tidymodels integration
2025-06-13 14:03:21 +02:00
dr. M.S. (Matthijs) Berends
3742e9e994
(v3.0.0.9002) website version nr
2025-06-06 09:37:25 +02:00
dr. M.S. (Matthijs) Berends
753f0e1ef9
(v3.0.0.9001) the first fixes
2025-06-04 13:10:20 +02:00
dr. M.S. (Matthijs) Berends
1710e220dd
AMR v3.0\!
2025-06-02 12:11:00 +02:00
dr. M.S. (Matthijs) Berends
79038fed21
(v2.1.1.9290) typo
2025-06-01 16:07:38 +02:00
dr. M.S. (Matthijs) Berends
d384b492cf
(v2.1.1.9289) unit test fix
2025-06-01 16:00:12 +02:00
dr. M.S. (Matthijs) Berends
46f80b1378
(v2.1.1.9288) mdro fix
2025-06-01 15:35:04 +02:00
dr. M.S. (Matthijs) Berends
5667ce3eae
(v2.1.1.9287) fix antibiotics
2025-06-01 12:17:47 +02:00
dr. M.S. (Matthijs) Berends
e70f3de02e
(v2.1.1.9286) deprecate antibiotics better, add ATC for ceftaroline
2025-06-01 11:54:40 +02:00
dr. M.S. (Matthijs) Berends
80f08f91da
(v2.1.1.9285) mdro fix
2025-05-21 16:51:40 +02:00
dr. M.S. (Matthijs) Berends
8d2c5afab6
publish anaconda
2025-05-20 15:05:24 +02:00
dr. M.S. (Matthijs) Berends
4933292639
publish anaconda
2025-05-20 15:00:45 +02:00
dr. M.S. (Matthijs) Berends
29706887b4
publish anaconda
2025-05-20 14:51:09 +02:00
dr. M.S. (Matthijs) Berends
a94452b9be
(v2.1.1.9281) speed improvement is_sir_eligible
2025-05-20 11:31:42 +02:00
dr. M.S. (Matthijs) Berends
26447fe29b
fix website
2025-05-16 17:53:21 +02:00
dr. M.S. (Matthijs) Berends
38cebc1541
(v2.1.1.9279) fix documentation, add foreign S3 exports to functions
2025-05-16 16:55:29 +02:00
dr. M.S. (Matthijs) Berends
139f79d372
(v2.1.1.9278) support AMR selectors in custom MDRO guideline
2025-05-16 11:20:19 +02:00
dr. M.S. (Matthijs) Berends
b8d7c8af7f
(v2.1.1.9277) mdro fix
2025-05-15 13:07:47 +02:00
dr. M.S. (Matthijs) Berends
4b171745de
(v2.1.1.9276) mdro() fix
2025-05-15 10:39:48 +02:00
dr. M.S. (Matthijs) Berends
48a59ee31a
(v2.1.1.9275) include guideline name in MDRO verbose output
2025-05-13 18:56:12 +02:00
dr. M.S. (Matthijs) Berends
7d45ca9fbf
(v2.1.1.9274) Improve is_sir_eligible, rename verbose MDRO output
2025-05-12 12:35:11 +02:00
dr. M.S. (Matthijs) Berends
3f9012dc47
(v2.1.1.9273) fix as.ab() / as.av()
2025-05-05 11:45:33 +02:00
dr. M.S. (Matthijs) Berends
fcd8b95e51
(v2.1.1.9272) mo codes sensititre
2025-05-04 18:50:25 +02:00
dr. M.S. (Matthijs) Berends
a778eb9bcf
(v2.1.1.9272) (v2.1.1.9271) add sensititre AB and animal codes
2025-05-04 16:40:08 +02:00
dr. M.S. (Matthijs) Berends
dc5559a2c4
(v2.1.1.9270) Add support for Korean, fix ATCs
2025-05-04 14:24:43 +02:00
dr. M.S. (Matthijs) Berends
b8f0f64287
(v2.1.1.9269) Support 7 new languages
2025-05-02 19:25:19 +02:00
dr. M.S. (Matthijs) Berends
2461631bce
(v2.1.1.9268) WISCA vignette, antibiogram sorting, fix translations
2025-05-01 14:45:21 +02:00
dr. M.S. (Matthijs) Berends
5e6bbdf3d1
(v2.1.1.9267) update ATCs
2025-05-01 11:48:49 +02:00
dr. M.S. (Matthijs) Berends
407bc17311
(v2.1.1.9263) small as.sir fix
2025-04-29 16:51:29 +02:00
dr. M.S. (Matthijs) Berends
30caa5e654
(v2.1.1.9262) fix knit printing
2025-04-29 16:31:38 +02:00
dr. M.S. (Matthijs) Berends
6013a7edc5
(v2.1.1.9261) fix knit printing antibiograms
2025-04-29 16:29:12 +02:00
dr. M.S. (Matthijs) Berends
faa9ae0d85
(v2.1.1.9260) fix antibiogram
2025-04-29 16:15:18 +02:00
dr. M.S. (Matthijs) Berends
6819473457
(v2.1.1.9259) Parallel computing for R < 4
2025-04-27 20:25:39 +02:00
dr. M.S. (Matthijs) Berends
52cd3e88cd
(v2.1.1.9258) fix for R <= 3.6
2025-04-27 17:53:13 +02:00
dr. M.S. (Matthijs) Berends
d2b3937a90
(v2.1.1.9257) adjust unit tests
2025-04-27 09:58:19 +02:00
dr. M.S. (Matthijs) Berends
f340e257fa
(v2.1.1.9256) unit tests
2025-04-26 21:29:50 +02:00
dr. M.S. (Matthijs) Berends
d166aa2c1d
(v2.1.1.9255) fix examples
2025-04-26 16:35:14 +02:00
