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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 09:26:13 +01:00
Commit Graph

1166 Commits

Author SHA1 Message Date
a6aa9e95fb completed old taxonomic names 2018-09-28 20:13:13 +02:00
768fe17324 removed clipboard functions as it violated CRAN policies 2018-09-28 16:05:18 +02:00
2b0080995e speed improvement for as.mo, more old taxonomic names 2018-09-27 23:23:48 +02:00
450992baea new: 1680 old taxonomic names 2018-09-25 16:44:40 +02:00
da60f27877 travis cant find knitr vignette builder 2018-09-25 00:36:35 +02:00
9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
df5d82fff3 unit tests 2018-09-17 21:51:21 +02:00
5d80cef338 added taxonomic data from ITIS 2018-09-17 20:53:32 +02:00
7680e4edd8 add shortest and longest to freq for characters 2018-09-17 09:42:09 +02:00
db14781593 add labels_rsi_count 2018-09-16 22:11:17 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
b0ca49d68d small improvement for is.rsi.eligible, more unit tests 2018-09-14 11:54:01 +02:00
cf5711fb0b algorithm improvement 2018-09-14 10:31:21 +02:00
d049ec9e69 ggplot2_rsi fix 2018-09-13 14:48:34 +02:00
cb0d74a4f0 support for French and Italian, added quote to freq 2018-09-10 15:45:25 +02:00
b83e6a9380 algoritm improvement, removed all Catabacter except for C. hongkongensis 2018-09-10 11:40:54 +02:00
4816419f0c AI improvements for microorganisms 2018-09-09 12:11:44 +02:00
936198372e translate CoNS 2018-09-08 16:24:12 +02:00
26f5be0033 support for portuguese, language determination based on system 2018-09-08 16:06:47 +02:00
b8a6c9af19 allow failure on macOS 2018-09-07 10:20:01 +02:00
0de65438b1 vignet fix 2018-09-07 09:32:31 +02:00
c5073f2fd1 small fix for microorganisms data set 2018-09-06 16:50:03 +02:00
de36b0be23 fix for empty values in mo_property 2018-09-05 12:21:27 +02:00
e39a9a8b05 added mo_shortname 2018-09-05 10:51:46 +02:00
790bd1622d added vanA to vanE positive Enterococci 2018-09-05 09:49:19 +02:00
b388e3fee7 Support for German and Spanish microorganism properties, cleanup 2018-09-04 11:33:30 +02:00
5405002119 news update 2018-09-03 11:22:28 +02:00
e25dd0e282 fix for joins 2018-09-03 10:04:49 +02:00
75fe4d401f new MOs, cleanup 2018-09-01 21:19:46 +02:00
5965d3c794 replaced bactid by mo 2018-08-31 13:36:19 +02:00
98ff131680 support for older versions of ggplot2 2018-08-29 16:39:28 +02:00
d654444c8e re added nrow 2018-08-29 16:35:32 +02:00
d9e68e0a50 ggplot_rsi example update, more unit tests 2018-08-29 16:25:57 +02:00
029157b3be 163 new trade names, added ab_tradenames 2018-08-29 12:27:37 +02:00
972fc4f6c7 ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid 2018-08-28 13:51:13 +02:00
2acdb1981c atc and bactid functions, readme update 2018-08-25 22:01:14 +02:00
460dee789f typo 2018-08-24 14:33:35 +02:00
baaf4cc3e1 few extra tests 2018-08-24 14:18:38 +02:00
a100d07da6 removed ratio, better rsi_calc, update for freq 2018-08-24 11:08:20 +02:00
0c0e538ef4 dependencies 2018-08-23 22:05:17 +02:00
febd0ca885 geom_rsi - any parameter 2018-08-23 21:27:15 +02:00
eee122825c rlang dep for macOS 2018-08-23 01:18:58 +02:00
8ab93b6688 unit tests 2018-08-23 01:01:50 +02:00
da5379c881 quasiquotation, alpha for geom_rsi 2018-08-23 00:40:36 +02:00
MS Berends
43ba16f8ed
small change in mutate example 2018-08-22 15:20:00 +02:00
Christian Luz
87d08905cc
small change in mutate example 2018-08-22 12:55:05 +02:00
3e87c8f409 count_* functions 2018-08-22 00:02:26 +02:00
MS Berends
e47e77febc
Delete .zenodo.json 2018-08-20 21:05:25 +02:00
MS Berends
eb4ecd9108
Update .zenodo.json 2018-08-20 20:50:56 +02:00
8bad33858e readme typo 2018-08-15 11:12:38 +02:00