Emil Rossing
							
						 
					 | 
					
						
						
							
						
						436b04dabe
					 | 
					
						
						
							
							Added support for 'html' in italicize_taxonomy()
						
						
						
						
						
						
							
						
					 | 
					
						2024-02-12 11:08:02 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						83e92fd88c
					 | 
					
						
						
							
							docu fix
						
						
						
						
						
						
							
						
					 | 
					
						2023-12-04 08:19:02 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						7059568581
					 | 
					
						
						
							
							fix scale functions
						
						
						
						
						
						
							
						
					 | 
					
						2023-12-03 16:51:54 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						c7461766ce
					 | 
					
						
						
							
							Remove RSI from package, add extra MIC scale functions
						
						
						
						
						
						
							
						
					 | 
					
						2023-12-03 11:34:48 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						6f417d0ef2
					 | 
					
						
						
							
							add scale_x_mic()
						
						
						
						
						
						
							
						
					 | 
					
						2023-12-03 01:06:00 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						4c11a7bd9c
					 | 
					
						
						
							
							v2.1.1
						
						
						
						
						
						
							
 v2.1.1
						
					 | 
					
						2023-10-22 15:51:27 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						ca72a646d0
					 | 
					
						
						
							
							scientific notation for MICs
						
						
						
						
						
						
							
						
					 | 
					
						2023-10-20 15:45:00 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						bcab4bc9ba
					 | 
					
						
						
							
							Fixes #123
						
						
						
						
						
						
							
						
					 | 
					
						2023-10-20 15:07:11 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						7cda9e575b
					 | 
					
						
						
							
							prepare for CRAN
						
						
						
						
						
						
							
						
					 | 
					
						2023-10-20 14:51:48 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						7dc96794be
					 | 
					
						
						
							
							fix rounding MICs on R-devel
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-20 08:24:27 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						a2cbbf470e
					 | 
					
						
						
							
							AMR v2.1.0 pre-release
						
						
						
						
						
						
							
 v2.1.0
						
					 | 
					
						2023-07-16 16:18:53 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						7a4628b73f
					 | 
					
						
						
							
							Added C. freundii complex and Y. pseudotuberculosis complex
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-14 10:49:06 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						fd480d1a9a
					 | 
					
						
						
							
							console hyperlink fix
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-14 09:50:13 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						08f7256852
					 | 
					
						
						
							
							include unit tests again
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-13 12:45:14 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						ddd01f9410
					 | 
					
						
						
							
							test to remove unit tests from build
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-13 09:42:37 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						eff164ecb1
					 | 
					
						
						
							
							indicate unique identifiers
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-12 21:26:32 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						ea2a4652e9
					 | 
					
						
						
							
							mouse-hover fixes
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-12 15:27:43 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						e1b4f99f4f
					 | 
					
						
						
							
							breakpoints fixes
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-12 15:20:04 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						0c46f61260
					 | 
					
						
						
							
							MO group fixes
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-12 15:04:48 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						9cf054903b
					 | 
					
						
						
							
							version bump
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-12 11:42:29 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						7cd9ca274c
					 | 
					
						
						
							
							add strep groups to ABCG
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-12 11:41:25 +01:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						66eeeb4b88
					 | 
					
						
						
							
							cleanup
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-11 14:29:40 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						8df1cd8d97
					 | 
					
						
						
							
							interpretation fixes
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-11 09:50:45 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						5e1221bceb
					 | 
					
						
						
							
							unit test
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-10 19:04:12 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						dab20c09f6
					 | 
					
						
						
							
							unit test
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-10 18:30:26 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						1b499bf012
					 | 
					
						
						
							
							fixes
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-10 17:02:28 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						a4e2e25e3f
					 | 
					
						
						
							
							reftbl in plots, speedup for as.sir() and mo_validate
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-10 16:43:46 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						70c601ca11
					 | 
					
						
						
							
							breakpoints UTI interpretation fix
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-10 13:41:52 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						3829311dd3
					 | 
					
						
						
							
							random() fix
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-08 21:00:49 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						acb534102b
					 | 
					
						
						
							
							new species groups, updated clinical breakpoints
						
						
						
						
						
						
							
						
					 | 
					
						2023-07-08 17:30:05 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						2d97cca6d9
					 | 
					
						
						
							
							fix reference_df endless loop
						
						
						
						
						
						
							
						
					 | 
					
						2023-06-26 13:52:02 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						1d9ee39cc7
					 | 
					
						
						
							
							fix for mo codes
						
						
						
						
						
						
							
						
					 | 
					
						2023-06-22 15:24:18 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								Dr. Matthijs Berends
							
						 
					 | 
					
						
						
							
						
						f065945d7b
					 | 
					
						
						
							
							Update clinical breakpoints and fix some as.mo() bugs (#117)
						
						
						
						
						
						
						
						* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests 
						
						
							
						
					 | 
					
						2023-06-22 15:10:59 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						9591688811
					 | 
					
						
						
							
							documentation update
						
						
						
						
						
						
							
						
					 | 
					
						2023-05-27 10:39:22 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						e1966503ee
					 | 
					
						
						
							
							unit testing R4.3
						
						
						
						
						
						
							
						
					 | 
					
						2023-05-26 20:37:00 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						766db4e21f
					 | 
					
						
						
							
							as.mo fix
						
						
						
						
						
						
							
						
					 | 
					
						2023-05-26 19:20:21 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						c6135d2082
					 | 
					
						
						
							
							updated microorganism codes
						
						
						
						
						
						
							
						
					 | 
					
						2023-05-26 16:10:01 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						0bcf55d3b6
					 | 
					
						
						
							
							improve as.mo()
						
						
						
						
						
						
							
						
					 | 
					
						2023-05-24 15:55:53 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						3018fb87a9
					 | 
					
						
						
							
							icu_exclude in first_isolate(), fixes #110
						
						
						
						
						
						
							
						
					 | 
					
						2023-05-17 22:12:10 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					
						
							
							
								 
								Dr. Matthijs Berends
							
						 
					 | 
					
						
						
							
						
						5f9769a4f7
					 | 
					
						
						
							
							Add oxygen tolerance
						
						
						
						
						
						
							
						
					 | 
					
						2023-05-12 10:37:07 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						8179092c57
					 | 
					
						
						
							
							add XPT files for SAS software
						
						
						
						
						
						
							
						
					 | 
					
						2023-05-12 10:07:55 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						91fa73dedf
					 | 
					
						
						
							
							add oxygen tolerance
						
						
						
						
						
						
							
						
					 | 
					
						2023-05-11 21:56:27 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						bf08d136a0
					 | 
					
						
						
							
							fix coercing NA to custom codes, fixes #107
						
						
						
						
						
						
							
						
					 | 
					
						2023-05-08 13:04:18 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						9de19fdc49
					 | 
					
						
						
							
							documentation
						
						
						
						
						
						
							
						
					 | 
					
						2023-04-21 10:07:25 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						9148a2dcf4
					 | 
					
						
						
							
							fix mo_rank() for 'unknown' MOs
						
						
						
						
						
						
							
						
					 | 
					
						2023-04-20 15:20:41 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						2758615cd0
					 | 
					
						
						
							
							version  fix
						
						
						
						
						
						
							
						
					 | 
					
						2023-04-19 00:34:41 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						02322ac2ee
					 | 
					
						
						
							
							Fix PK/PD breakpoints
						
						
						
						
						
						
							
						
					 | 
					
						2023-04-19 00:31:31 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						cabffb22fd
					 | 
					
						
						
							
							anaerobic codes
						
						
						
						
						
						
							
						
					 | 
					
						2023-04-17 11:26:19 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						ad3061c754
					 | 
					
						
						
							
							unit test
						
						
						
						
						
						
							
						
					 | 
					
						2023-04-15 10:32:37 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 | 
				
			
				
					| 
						
					 | 
					
						
						
							
						
						1a02d302d4
					 | 
					
						
						
							
							Fix translatable strings
						
						
						
						
						
						
							
						
					 | 
					
						2023-04-15 09:32:13 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
						
					 |