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d277d58475
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(v1.6.0.9002) R-3.0 installation fix
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2021-04-12 14:24:40 +02:00 |
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6ff5448192
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(v1.6.0.9001) support Inf for episodes
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2021-04-12 12:35:13 +02:00 |
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7a3139f7cc
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(v1.6.0.9000) custom EUCAST rules
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2021-04-07 08:37:42 +02:00 |
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551f99dc8f
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v1.6.0
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2021-03-15 07:23:21 +01:00 |
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4e0a9533ad
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(v1.5.0.9041) SNOMED update
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2021-03-11 21:42:30 +01:00 |
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8d6ceb6a15
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(v1.5.0.9040) removal of isolate_identifier
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2021-03-08 09:44:17 +01:00 |
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a7c9b4c295
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(v1.5.0.9039) handle first isolates for missing antibiograms
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2021-03-08 02:38:32 +01:00 |
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450bbe5fb7
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(v1.5.0.9034) unit test fix
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2021-03-07 21:16:45 +01:00 |
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1bbf409fe5
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(v1.5.0.9033) as.rsi fix
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2021-03-07 16:15:43 +01:00 |
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850c123de7
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(v1.5.0.9032) All group generics for MICs
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2021-03-07 13:52:39 +01:00 |
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91dd755cac
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(v1.5.0.9031) math processing of MICs
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2021-03-05 15:36:39 +01:00 |
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0d29bde693
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(v1.5.0.9030) as.ab() speed improvement
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2021-03-05 10:32:09 +01:00 |
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0e0e3c4ffa
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(v1.5.0.9029) added missing families and orders
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2021-03-05 01:31:46 +01:00 |
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ddf88345f1
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(v1.5.0.9028) Updated taxonomy until March 2021
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2021-03-04 23:28:32 +01:00 |
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41f94cde97
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(v1.5.0.9027) website update
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2021-02-26 12:11:29 +01:00 |
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1737d56ae4
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(v1.5.0.9026) vignette update, support for GISA
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2021-02-25 12:31:12 +01:00 |
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a673407904
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(v1.5.0.9025) big plot and ggplot generics update
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2021-02-25 10:33:08 +01:00 |
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31ceba5441
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(v1.5.0.9024) more speed improvements
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2021-02-22 20:21:33 +01:00 |
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0fdabff1ba
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(v1.5.0.9023) mo properties speed improvement
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2021-02-21 23:19:40 +01:00 |
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062c49fca1
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(v1.5.0.9022) mo properties speed improvement
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2021-02-21 22:56:35 +01:00 |
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5ef8cb41a7
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(v1.5.0.9021) improve speed of %like%
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2021-02-21 20:15:09 +01:00 |
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daa12ced2c
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(v1.5.0.9020) translation fix
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2021-02-18 23:23:14 +01:00 |
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601ea7377c
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(v1.5.0.9019) use functions without loading AMR pkg
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2021-02-17 10:58:13 +01:00 |
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2dd0656355
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(v1.5.0.9018) fix unit tests
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2021-02-09 12:28:15 +01:00 |
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cb404492b2
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(v1.5.0.9017) unit testing
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2021-02-08 21:09:36 +01:00 |
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4a84894f79
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(v1.5.0.9016) only_rsi_columns update, documentation
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2021-02-08 14:18:42 +01:00 |
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8fda473e49
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(v1.5.0.9015) unit test fix, grouped first isolates
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2021-02-04 16:48:16 +01:00 |
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2eca8c3f01
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(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
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2021-02-02 23:57:35 +01:00 |
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20d638c193
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(v1.5.0.9013) updated tibble printing colours
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2021-01-28 16:09:30 +01:00 |
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331c1f6508
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(v1.5.0.9012) ampc_cephalosporin_resistance for I
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2021-01-25 21:58:00 +01:00 |
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24eb4453db
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(v1.5.0.9011) small dosage update
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2021-01-24 23:27:11 +01:00 |
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286eaa9699
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(v1.5.0.9010) MDRO vignette update, get_episode for < day
|
2021-01-24 14:48:56 +01:00 |
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1a88caa119
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(v1.5.0.9009) unit test fixes
|
2021-01-22 10:55:07 +01:00 |
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1ba44776a1
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(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
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2021-01-22 10:20:41 +01:00 |
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27f084d819
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(v1.5.0.9007) updated unit tests
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2021-01-18 18:45:43 +01:00 |
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4eab095306
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(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
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e95218c0d1
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(v1.5.0.9005) custom MDRO guideline
|
2021-01-17 10:35:21 +01:00 |
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e699de955c
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(v1.5.0.9004) custom MDRO guideline
|
2021-01-17 00:26:48 +01:00 |
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7ebc534ccd
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(v1.5.0.9003) verbose output of mdro()
|
2021-01-15 22:44:52 +01:00 |
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6745f3fb17
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(v1.5.0.9002) doc update
|
2021-01-14 15:51:41 +01:00 |
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bc00470dca
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(v1.5.0.9001) more informative argument errors
|
2021-01-14 14:41:44 +01:00 |
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d014955ce0
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(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
|
2021-01-12 22:08:04 +01:00 |
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3b84b8be75
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v1.5.0
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2021-01-06 11:16:17 +01:00 |
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1563dcd1aa
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(v1.4.0.9062) unit test fix
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2021-01-04 14:46:17 +01:00 |
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a7ea4c9d2f
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(v1.4.0.9061) ab class selector fix
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2021-01-04 14:16:09 +01:00 |
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8d117820b8
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(v1.4.0.9060) ab class selector fix
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2021-01-04 13:39:06 +01:00 |
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c9de74c81a
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(v1.4.0.9059) ab class selector fix
|
2021-01-04 12:29:25 +01:00 |
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82cfa24ea4
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(v1.4.0.9058) GH actions update
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2021-01-04 11:27:37 +01:00 |
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daac96fefe
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(v1.4.0.9057) GH actions update
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2021-01-04 09:49:42 +01:00 |
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63a4dda467
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(v1.4.0.9056) subsetting ab class selectors for base R
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2021-01-03 23:40:05 +01:00 |
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ecac443f86
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(v1.4.0.9055) more unit tests
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2020-12-31 13:44:58 +01:00 |
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10dec96058
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(v1.4.0.9054) unit test update
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2020-12-29 22:06:01 +01:00 |
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d3f007bf65
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(v1.4.0.9053) unit test old R versions
|
2020-12-29 21:23:01 +01:00 |
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526f8afb08
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(v1.4.0.9052) replaced all sapply's with type-safe vapply's
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2020-12-28 22:24:33 +01:00 |
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ed198916bf
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(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants
|
2020-12-27 14:23:11 +01:00 |
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8b52f9b1be
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(v1.4.0.9047) unit tests
|
2020-12-27 00:30:28 +01:00 |
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df37584189
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(v1.4.0.9044) mo tibble printing, mo_shortname() fix
|
2020-12-24 23:29:10 +01:00 |
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81af41da3a
|
(v1.4.0.9041) updates based on review
|
2020-12-17 16:22:25 +01:00 |
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28e77680c5
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(v1.4.0) matching score update
|
2020-10-08 11:16:03 +02:00 |
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4e0374af29
|
(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
|
2020-09-29 23:35:46 +02:00 |
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9667c2994f
|
(v1.3.0.9029) eucast rules fix, unique()
|
2020-09-25 14:44:50 +02:00 |
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c19095a3d5
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(v1.3.0.9026) eucast expert rules 3.2
|
2020-09-24 00:30:11 +02:00 |
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2f0186ace2
|
(v1.3.0.9024) optimalisation
|
2020-09-19 12:57:51 +02:00 |
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d049cce69b
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(v1.3.0.9023) optimalisation
|
2020-09-19 11:54:01 +02:00 |
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4e40e42011
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(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
|
2020-09-18 16:05:53 +02:00 |
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354c606d6a
|
(v1.3.0.9019) small fix
|
2020-09-14 14:08:07 +02:00 |
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7b6dd676f7
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(v1.3.0.9018) language corrections
|
2020-09-14 12:21:23 +02:00 |
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0f6760d427
|
(v1.3.0.9017) small fix
|
2020-09-12 13:54:21 +02:00 |
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3ff871afeb
|
(v1.3.0.9016) mo_uncertainties() overhaul
|
2020-09-12 08:49:01 +02:00 |
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68e9cb78e9
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(v1.3.0.9015) as.mo() speedup for valid taxonomic names
|
2020-09-03 20:59:21 +02:00 |
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c4b87fe241
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(v1.3.0.9014) as.mo() speed improvement
|
2020-09-03 12:31:48 +02:00 |
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18e52f2725
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(v1.3.0.9013) data sets vignette update
|
2020-08-29 21:52:51 +02:00 |
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4f72b3bfc4
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(v1.3.0.9012) data sets vignette update
|
2020-08-29 21:41:46 +02:00 |
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50b953b141
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(v1.3.0.9011) suggests pkg update
|
2020-08-29 12:04:23 +02:00 |
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74a172ef55
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(v1.3.0.9010) S3 extensions without dependencies
|
2020-08-28 21:55:47 +02:00 |
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81af0b001c
|
(v1.3.0.9009) documentation update
|
2020-08-26 16:13:40 +02:00 |
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9b8db57c65
|
(v1.3.0.9008) also tibble printing for ab
|
2020-08-26 15:34:12 +02:00 |
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5e45fdcf2a
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(v1.3.0.9007) tibble printing
|
2020-08-26 11:33:54 +02:00 |
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c8c8bb4e3a
|
(v1.3.0.9006) website update
|
2020-08-21 11:40:13 +02:00 |
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818d0441e0
|
(v1.3.0.9005) website update
|
2020-08-17 21:49:58 +02:00 |
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dab017a50f
|
(v1.3.0.9004) data sets, as.disk() improvement
|
2020-08-16 21:38:42 +02:00 |
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08d62bb5d5
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(v1.3.0.9002) intrinsic_resistant data set
|
2020-08-14 13:36:10 +02:00 |
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c8edcb7439
|
(v1.3.0) small fixes
|
2020-07-30 15:15:52 +02:00 |
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453f7f210b
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(v1.2.0.9038) CLSI 2019 fix
|
2020-07-29 10:33:47 +02:00 |
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1b65d76cfb
|
(v1.2.0.9037) survey on website
|
2020-07-28 18:39:57 +02:00 |
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09fba38ea6
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(v1.2.0.9035) as.mo() speed improvement
|
2020-07-22 10:24:23 +02:00 |
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1d66b5c43c
|
(v1.2.0.9032) Permanently move to GitHub
|
2020-07-09 20:07:39 +02:00 |
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76fc8e1b14
|
(v1.2.0.9026) move to github
|
2020-07-08 14:48:06 +02:00 |
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344bbd57f4
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(v1.2.0.9014) ab_from_text()
|
2020-06-25 17:34:50 +02:00 |
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352508889c
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(v1.2.0.9005) data set fix
|
2020-06-09 16:31:44 +02:00 |
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8b692ecfcf
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(v1.2.0.9004) rsi_df() fix for groups
|
2020-06-09 16:18:03 +02:00 |
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40221e5244
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(v1.2.0.9003) better terminal colour support
|
2020-06-05 13:56:05 +02:00 |
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d9a4b0bcaf
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(v1.1.0.9021) 1st isolates update
|
2020-05-28 10:51:56 +02:00 |
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86d44054f0
|
(v1.1.0.9020) updated taxonomy
|
2020-05-27 16:37:49 +02:00 |
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1b1e243d14
|
(v1.1.0.9016) small fix
|
2020-05-21 12:28:57 +02:00 |
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19703eb5d3
|
(v1.1.0.9012) lose dependencies
|
2020-05-19 12:08:49 +02:00 |
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7f3da74b17
|
(v1.1.0.9004) lose dependencies
|
2020-05-16 13:05:47 +02:00 |
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4be54d608c
|
(v1.0.1.9008) RIVM abbreviations for drugs
|
2020-04-14 20:38:09 +02:00 |
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7a6f819232
|
(v1.0.1.9006) added generic CLSI rules
|
2020-04-14 14:12:31 +02:00 |
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d1cb7d3b6f
|
(v1.0.1.9005) as.mo() improvements
|
2020-04-13 21:09:56 +02:00 |
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219cff403f
|
(v1.0.1.9004) Support dplyr 1.0.0
|
2020-03-14 14:05:43 +01:00 |
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fa0d9c58d9
|
(v1.0.1.9000) first PCA implementation
|
2020-03-07 21:48:21 +01:00 |
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47fe8b7820
|
(v1.0.0.9004) add example_isolaten_unclean
|
2020-02-21 16:05:19 +01:00 |
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c6184a0fb8
|
(v0.9.0.9029) add uti to as.rsi()
|
2020-02-20 13:19:23 +01:00 |
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5e2b294351
|
(v0.9.0.9026) update documentation
|
2020-02-17 14:38:01 +01:00 |
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9b8b02960e
|
(v0.9.0.9023) EUCAST 2020 guidelines
|
2020-02-14 19:54:13 +01:00 |
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5a98e6b777
|
(v0.9.0.9022) inheritance fix
|
2020-02-10 14:18:15 +01:00 |
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c7a76ba713
|
(v0.9.0.9020) as.mo() improvement
|
2020-02-09 22:04:29 +01:00 |
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4e1c16c5a5
|
(v0.9.0.9019) website update
|
2020-02-01 15:09:36 +01:00 |
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a13c62e6e8
|
(v0.9.0.9016) Support SNOMED codes
|
2020-01-27 19:14:23 +01:00 |
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42b079cdb7
|
(v0.9.0.9015) Fix for as.rsi.disk()
|
2020-01-27 11:37:00 +01:00 |
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9a3891efe4
|
(v0.9.0.9014) Machine reading guidelines
|
2020-01-27 11:05:39 +01:00 |
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449d9bde35
|
(v0.9.0.9012) Support for LOINC codes
|
2020-01-26 20:20:00 +01:00 |
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895e97c310
|
(v0.9.0.9010) Support R 4.0
|
2020-01-15 15:24:08 +01:00 |
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64f5ceef03
|
(v0.9.0.9009) antibiotics data set update
|
2020-01-08 11:30:33 +01:00 |
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ced1a7b7fa
|
(v0.9.0.9008) Happy new year! Add lifecycles
|
2020-01-05 17:22:09 +01:00 |
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cc8cd043e1
|
(v0.9.0.9004) website fix
|
2019-12-20 21:06:39 +01:00 |
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2db2a2458a
|
(v0.9.0.9003) as.mo() speedup for fullnames
|
2019-12-20 15:05:58 +01:00 |
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f7eb6e4107
|
(v0.9.0.9002) website updates
|
2019-12-16 11:08:25 +01:00 |
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c5f00f4a9f
|
(v0.8.0.9036) complete documentation rewrite
|
2019-11-28 22:32:17 +01:00 |
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e53cc4990c
|
(v0.8.0.9034) add cid to antivirals
|
2019-11-23 12:39:57 +01:00 |
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267320f15f
|
(v0.8.0.9033) antivirals data set, cleanup
|
2019-11-18 12:10:47 +01:00 |
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09e2730b53
|
(v0.8.0.9031) as.mo() improvements
|
2019-11-15 15:25:03 +01:00 |
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29e448883d
|
(v0.8.0.9008) new verbose mode for MDROs
|
2019-11-03 22:24:42 +01:00 |
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09c4b04cd0
|
(v0.8.0.9007) Enterobacterales order
|
2019-10-30 23:02:50 +01:00 |
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7ff2ad8188
|
(v0.8.0.9006) small typos
|
2019-10-27 00:31:59 +02:00 |
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d2e8249edd
|
(v0.8.0.9004) added MDR guideline by Magiorakos et al.
|
2019-10-26 21:56:41 +02:00 |
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3e5ab53209
|
(v0.8.0.9002) eucast_rules() fix for S. maltophilia
|
2019-10-23 14:48:25 +02:00 |
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59af355a89
|
(v0.7.1.9101) NEWS update, fix authors
|
2019-10-09 10:52:19 +02:00 |
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c8f6b97847
|
(v0.7.1.9100) bug_drug speed, MIC levels
|
2019-10-08 22:21:33 +02:00 |
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b9f01d686e
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(v0.7.1.9089) eucast file update
|
2019-09-25 22:37:40 +02:00 |
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99d0fe76dd
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(v0.7.1.9088) bug_drug improvement
|
2019-09-25 15:43:22 +02:00 |
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64d9829030
|
(v0.7.1.9081) bug_drug fixes
|
2019-09-23 13:53:50 +02:00 |
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66d405ff57
|
(v0.7.1.9080) new LIS codes
|
2019-09-22 17:19:59 +02:00 |
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40e6b3e8f6
|
(v0.7.1.9077) mo codes fix
|
2019-09-20 14:18:29 +02:00 |
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3596adb295
|
(v0.7.1.9076) mo codes
|
2019-09-20 12:33:05 +02:00 |
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e2aa4f996b
|
(v0.7.1.9075) new microorganism codes
|
2019-09-18 15:46:09 +02:00 |
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398c5bdc4f
|
(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
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cd178ee569
|
(v0.7.1.9072) key_antibiotics() for foreign systems
|
2019-09-12 15:08:53 +02:00 |
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7108454ba5
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(v0.7.1.9055) algorithm improvements
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2019-08-13 16:15:08 +02:00 |
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1d423cca89
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(v0.7.1.9035) cephalosporins and unit tests
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2019-08-11 19:07:26 +02:00 |
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3f5828e74a
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(v0.7.1.9034) mo.codes fix for Dracunculus spp.
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2019-08-09 23:45:26 +02:00 |
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6598c5615d
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(v0.7.1.9033) 5000 new fungi
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2019-08-09 23:22:10 +02:00 |
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22a206ffd8
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(v0.7.1.9030) eucast_rules() fix
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2019-08-08 15:52:07 +02:00 |
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3a1f960f89
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(v0.7.1.9024) eucast_rules() fix, new MOs
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2019-08-06 14:39:22 +02:00 |
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b15d59cf03
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(v0.7.1.9009) note for WHOCC
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2019-07-09 11:22:46 +02:00 |
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d9e257f8db
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(v0.7.1.9008) ab update
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2019-07-04 19:08:18 +02:00 |
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65c6702b21
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(v0.7.1.9004) atc class removal
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2019-06-27 11:57:45 +02:00 |
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c9156c004a
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(v0.7.0.9013) mo_synonym fix
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2019-06-22 14:49:12 +02:00 |
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254745061c
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(v0.7.0.9008) T. vaginalis, rsi_df
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2019-06-13 14:28:46 +02:00 |
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