 dr. M.S. (Matthijs) Berends
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95050ee3e0
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(v1.7.1.9007) Updated antibiotics dataset, fixes #41
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2021-06-23 10:03:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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d04e83f494
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(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
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2021-06-22 12:16:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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99be4c7e7e
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(v1.7.1.9002) ab class selectors update
|
2021-06-14 22:04:04 +02:00 |
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dr. M.S. (Matthijs) Berends
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683a0e748a
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(v1.7.1.9001) unit tests
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2021-06-05 15:12:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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1908e7cc7a
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(v1.7.1.9000) ab_class update, unit tests
|
2021-06-04 21:07:55 +02:00 |
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dr. M.S. (Matthijs) Berends
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7e70403efb
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(v1.7.1) New CRAN release
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2021-06-03 15:19:21 +02:00 |
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dr. M.S. (Matthijs) Berends
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bef0f42f66
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(v1.7.0.9001) CLSI 2020 guideline
|
2021-06-01 15:33:06 +02:00 |
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dr. M.S. (Matthijs) Berends
|
a12572c752
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doc update
|
2021-05-26 11:00:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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ac73a8d849
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v1.7.0
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2021-05-24 15:29:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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e5599bc694
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(v1.6.0.9065) unit tests
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2021-05-24 11:01:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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4fbf9e1720
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(v1.6.0.9064) prepare new release
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2021-05-24 09:34:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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a13fd98e8b
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(v1.6.0.9063) prepare new release
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2021-05-24 09:00:11 +02:00 |
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dr. M.S. (Matthijs) Berends
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06302d296a
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(v1.6.0.9062) code consistency
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2021-05-24 00:06:28 +02:00 |
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dr. M.S. (Matthijs) Berends
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07939b1a14
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(v1.6.0.9061) age() update
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2021-05-23 23:11:16 +02:00 |
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dr. M.S. (Matthijs) Berends
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04ef5b28e7
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(v1.6.0.9050) printing NA in custom_eucast_rules()
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2021-05-20 10:10:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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2413efd5c1
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(v1.6.0.9048) ab selectors overhaul
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2021-05-19 22:55:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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6920c0be41
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(v1.6.0.9047) filter_ab_class() fixes
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2021-05-18 11:29:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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cfb7df823e
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(v1.6.0.9044) betalactams() selector
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2021-05-18 00:53:04 +02:00 |
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dr. M.S. (Matthijs) Berends
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be49131ed7
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(v1.6.0.9043) translation update
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2021-05-17 19:43:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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aeea00881e
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(v1.6.0.9023) new unit test flow
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2021-05-13 19:31:47 +02:00 |
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dr. M.S. (Matthijs) Berends
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655b813e99
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(v1.6.0.9022) unit test fix
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2021-05-13 15:56:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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29dbfa2f49
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(v1.6.0.9021) join functions update
|
2021-05-12 18:15:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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5679ccdaf9
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(v1.6.0.9017) extra system codes
|
2021-05-04 12:47:33 +02:00 |
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dr. M.S. (Matthijs) Berends
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12a8d59869
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(v1.6.0.9015) italicise_taxonomy
|
2021-05-03 10:47:32 +02:00 |
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dr. M.S. (Matthijs) Berends
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a9fd4aa49f
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(v1.6.0.9013) website update
|
2021-04-29 17:16:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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5e06b20d43
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(v1.6.0.9012) unit tests
|
2021-04-27 11:28:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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c5fff1c95c
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(v1.6.0.9011) unit tests
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2021-04-27 10:27:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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93683a4ae2
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(v1.6.0.9010) big first_isolate() update
|
2021-04-26 23:57:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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5f9e7bd3ee
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(v1.6.0.9009) key_antibiotics update
|
2021-04-23 16:13:26 +02:00 |
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dr. M.S. (Matthijs) Berends
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70b803dbb6
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(v1.6.0.9008) unlike, bugfix for col_mo naming
|
2021-04-23 09:59:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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c6289c3fc3
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(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo
|
2021-04-20 10:46:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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de66eccf43
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(v1.6.0.9006) eucast rules fix for Ochrobactrum anthropi
|
2021-04-16 14:59:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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00d3e437a8
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(v1.6.0.9003) like() fix
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2021-04-16 11:41:05 +02:00 |
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dr. M.S. (Matthijs) Berends
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6ff5448192
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(v1.6.0.9001) support Inf for episodes
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2021-04-12 12:35:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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7a3139f7cc
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(v1.6.0.9000) custom EUCAST rules
|
2021-04-07 08:37:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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551f99dc8f
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v1.6.0
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2021-03-15 07:23:21 +01:00 |
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dr. M.S. (Matthijs) Berends
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4e0a9533ad
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(v1.5.0.9041) SNOMED update
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2021-03-11 21:42:30 +01:00 |
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dr. M.S. (Matthijs) Berends
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8d6ceb6a15
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(v1.5.0.9040) removal of isolate_identifier
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2021-03-08 09:44:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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a7c9b4c295
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(v1.5.0.9039) handle first isolates for missing antibiograms
|
2021-03-08 02:38:32 +01:00 |
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dr. M.S. (Matthijs) Berends
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450bbe5fb7
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(v1.5.0.9034) unit test fix
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2021-03-07 21:16:45 +01:00 |
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dr. M.S. (Matthijs) Berends
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850c123de7
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(v1.5.0.9032) All group generics for MICs
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2021-03-07 13:52:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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91dd755cac
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(v1.5.0.9031) math processing of MICs
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2021-03-05 15:36:39 +01:00 |
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dr. M.S. (Matthijs) Berends
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0e0e3c4ffa
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(v1.5.0.9029) added missing families and orders
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2021-03-05 01:31:46 +01:00 |
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dr. M.S. (Matthijs) Berends
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ddf88345f1
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(v1.5.0.9028) Updated taxonomy until March 2021
|
2021-03-04 23:28:32 +01:00 |
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dr. M.S. (Matthijs) Berends
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41f94cde97
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(v1.5.0.9027) website update
|
2021-02-26 12:11:29 +01:00 |
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dr. M.S. (Matthijs) Berends
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1737d56ae4
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(v1.5.0.9026) vignette update, support for GISA
|
2021-02-25 12:31:12 +01:00 |
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dr. M.S. (Matthijs) Berends
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a673407904
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(v1.5.0.9025) big plot and ggplot generics update
|
2021-02-25 10:33:08 +01:00 |
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dr. M.S. (Matthijs) Berends
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5ef8cb41a7
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(v1.5.0.9021) improve speed of %like%
|
2021-02-21 20:15:09 +01:00 |
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dr. M.S. (Matthijs) Berends
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601ea7377c
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(v1.5.0.9019) use functions without loading AMR pkg
|
2021-02-17 10:58:13 +01:00 |
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dr. M.S. (Matthijs) Berends
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4a84894f79
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(v1.5.0.9016) only_rsi_columns update, documentation
|
2021-02-08 14:18:42 +01:00 |
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dr. M.S. (Matthijs) Berends
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8fda473e49
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(v1.5.0.9015) unit test fix, grouped first isolates
|
2021-02-04 16:48:16 +01:00 |
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dr. M.S. (Matthijs) Berends
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2eca8c3f01
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(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
|
2021-02-02 23:57:35 +01:00 |
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dr. M.S. (Matthijs) Berends
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20d638c193
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(v1.5.0.9013) updated tibble printing colours
|
2021-01-28 16:09:30 +01:00 |
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dr. M.S. (Matthijs) Berends
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331c1f6508
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(v1.5.0.9012) ampc_cephalosporin_resistance for I
|
2021-01-25 21:58:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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24eb4453db
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(v1.5.0.9011) small dosage update
|
2021-01-24 23:27:11 +01:00 |
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dr. M.S. (Matthijs) Berends
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286eaa9699
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(v1.5.0.9010) MDRO vignette update, get_episode for < day
|
2021-01-24 14:48:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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1a88caa119
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(v1.5.0.9009) unit test fixes
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2021-01-22 10:55:07 +01:00 |
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dr. M.S. (Matthijs) Berends
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1ba44776a1
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(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
|
2021-01-22 10:20:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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4eab095306
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(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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e699de955c
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(v1.5.0.9004) custom MDRO guideline
|
2021-01-17 00:26:48 +01:00 |
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dr. M.S. (Matthijs) Berends
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6745f3fb17
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(v1.5.0.9002) doc update
|
2021-01-14 15:51:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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bc00470dca
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(v1.5.0.9001) more informative argument errors
|
2021-01-14 14:41:44 +01:00 |
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dr. M.S. (Matthijs) Berends
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d014955ce0
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(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
|
2021-01-12 22:08:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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3b84b8be75
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v1.5.0
|
2021-01-06 11:16:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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c9de74c81a
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(v1.4.0.9059) ab class selector fix
|
2021-01-04 12:29:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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d3f007bf65
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(v1.4.0.9053) unit test old R versions
|
2020-12-29 21:23:01 +01:00 |
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dr. M.S. (Matthijs) Berends
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526f8afb08
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(v1.4.0.9052) replaced all sapply's with type-safe vapply's
|
2020-12-28 22:24:33 +01:00 |
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dr. M.S. (Matthijs) Berends
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ccf13dd6c0
|
(v1.4.0.9051) ab class
|
2020-12-27 23:19:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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afc325c314
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(v1.4.0.9050) ab selectors base R
|
2020-12-27 20:32:40 +01:00 |
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dr. M.S. (Matthijs) Berends
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ed198916bf
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(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants
|
2020-12-27 14:23:11 +01:00 |
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dr. M.S. (Matthijs) Berends
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acbd0cf7ca
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(v1.4.0.9046) get_episode
|
2020-12-27 00:07:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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df37584189
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(v1.4.0.9044) mo tibble printing, mo_shortname() fix
|
2020-12-24 23:29:10 +01:00 |
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dr. M.S. (Matthijs) Berends
|
128ebcfd62
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(v1.4.0.9043) documentation update
|
2020-12-22 00:51:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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ee70883246
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(v1.4.0.9042) auto dark theme website
|
2020-12-21 22:46:29 +01:00 |
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dr. M.S. (Matthijs) Berends
|
81af41da3a
|
(v1.4.0.9041) updates based on review
|
2020-12-17 16:22:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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1faa816090
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(v1.4.0.9040) LA-MRSA / CA-MRSA
|
2020-12-16 16:18:53 +01:00 |
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dr. M.S. (Matthijs) Berends
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c8bcecf232
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(v1.4.0.9037) random_* functions
|
2020-12-12 23:17:29 +01:00 |
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dr. M.S. (Matthijs) Berends
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c9fc7e8a45
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(v1.4.0.9034) MIC printing update
|
2020-12-09 09:40:50 +01:00 |
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dr. M.S. (Matthijs) Berends
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2145f1d1ba
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(v1.4.0.9033) documentation update
|
2020-12-08 12:37:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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1bdb136b3a
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(v1.4.0.9032) auto-data guessing for functions
|
2020-12-07 16:06:42 +01:00 |
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dr. M.S. (Matthijs) Berends
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e03b3c96d3
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(v1.4.0.9030) as.mo() fix for known lab codes
|
2020-12-03 16:59:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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4c114ff4b4
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(v1.4.0.9029) grey background for backticks, like readr pkg
|
2020-12-01 16:59:57 +01:00 |
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dr. M.S. (Matthijs) Berends
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7b42b15c90
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(v1.4.0.9026) docu update
|
2020-11-24 11:47:54 +01:00 |
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dr. M.S. (Matthijs) Berends
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b045b571a6
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(v1.4.0.9025) is_new_episode()
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2020-11-23 21:50:27 +01:00 |
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dr. M.S. (Matthijs) Berends
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363218da7e
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(v1.4.0.9024) is_new_episode()
|
2020-11-17 16:57:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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deefce9520
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(v1.4.0.9021) more robust class setting
|
2020-11-16 16:57:55 +01:00 |
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dr. M.S. (Matthijs) Berends
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05fb213a7c
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(v1.4.0.9020) mo_is_intrinsic_resistant
|
2020-11-16 11:03:24 +01:00 |
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dr. M.S. (Matthijs) Berends
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9666b78ea7
|
(v1.4.0.9019) documentation update
|
2020-11-12 11:07:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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f2edac3b67
|
(v1.4.0.9018) reference_data in as.rsi()
|
2020-11-11 18:54:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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01d9522434
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(v1.4.0.9017) stringsAsFactors definitions
|
2020-11-11 16:49:27 +01:00 |
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dr. M.S. (Matthijs) Berends
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dd5a0319ef
|
(v1.4.0.9014) bugfix
|
2020-11-09 15:18:36 +01:00 |
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dr. M.S. (Matthijs) Berends
|
d3b1d33210
|
(v1.4.0.9013) is_gram_negative/positive update
|
2020-11-09 13:07:02 +01:00 |
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dr. M.S. (Matthijs) Berends
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423879c034
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(v1.4.0.9012) reference_df fix
|
2020-11-05 01:11:49 +01:00 |
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dr. M.S. (Matthijs) Berends
|
760d69a3e0
|
(v1.4.0.9008) like variations
|
2020-10-26 12:23:03 +01:00 |
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dr. M.S. (Matthijs) Berends
|
9109b9dd62
|
(v1.4.0.9005) bugfix
|
2020-10-21 13:07:23 +02:00 |
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dr. M.S. (Matthijs) Berends
|
ade9f8bafd
|
(v1.4.0.9004) bugfix
|
2020-10-21 11:50:43 +02:00 |
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dr. M.S. (Matthijs) Berends
|
2ef7dfc8a3
|
(v1.4.0.9003) CoNS update
|
2020-10-20 21:00:57 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4e9ccb4435
|
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
|
2020-10-19 17:09:19 +02:00 |
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dr. M.S. (Matthijs) Berends
|
28e77680c5
|
(v1.4.0) matching score update
|
2020-10-08 11:16:03 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c04dc852cf
|
(v1.3.0.9039) lifecycle updates, added excess kurtosis
|
2020-10-04 21:02:16 +02:00 |
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dr. M.S. (Matthijs) Berends
|
baf510183c
|
(v1.3.0.9038) prefinal 1.4.0
|
2020-10-04 19:26:43 +02:00 |
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dr. M.S. (Matthijs) Berends
|
ac1c78c793
|
(v1.3.0.9036) documentation fix
|
2020-09-30 10:24:53 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4e0374af29
|
(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
|
2020-09-29 23:35:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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36ec8b0d81
|
(v1.3.0.9033) skimr fix
|
2020-09-28 11:00:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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22f6ceb3e4
|
(v1.3.0.9031) matching score update
|
2020-09-26 16:51:17 +02:00 |
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dr. M.S. (Matthijs) Berends
|
050a9a04fb
|
(v1.3.0.9030) matching score update
|
2020-09-26 16:26:01 +02:00 |
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dr. M.S. (Matthijs) Berends
|
9667c2994f
|
(v1.3.0.9029) eucast rules fix, unique()
|
2020-09-25 14:44:50 +02:00 |
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dr. M.S. (Matthijs) Berends
|
1d982a82b4
|
(v1.3.0.9028) eucast fix
|
2020-09-24 12:38:13 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c19095a3d5
|
(v1.3.0.9026) eucast expert rules 3.2
|
2020-09-24 00:30:11 +02:00 |
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dr. M.S. (Matthijs) Berends
|
d049cce69b
|
(v1.3.0.9023) optimalisation
|
2020-09-19 11:54:01 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4e40e42011
|
(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
|
2020-09-18 16:05:53 +02:00 |
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dr. M.S. (Matthijs) Berends
|
ab60f613aa
|
(v1.3.0.9020) fix for uncertainty in as.mo()
|
2020-09-14 19:41:48 +02:00 |
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dr. M.S. (Matthijs) Berends
|
354c606d6a
|
(v1.3.0.9019) small fix
|
2020-09-14 14:08:07 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7b6dd676f7
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(v1.3.0.9018) language corrections
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2020-09-14 12:21:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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3ff871afeb
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(v1.3.0.9016) mo_uncertainties() overhaul
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2020-09-12 08:49:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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c4b87fe241
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(v1.3.0.9014) as.mo() speed improvement
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2020-09-03 12:31:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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81af0b001c
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(v1.3.0.9009) documentation update
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2020-08-26 16:13:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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9b8db57c65
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(v1.3.0.9008) also tibble printing for ab
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2020-08-26 15:34:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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5e45fdcf2a
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(v1.3.0.9007) tibble printing
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2020-08-26 11:33:54 +02:00 |
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dr. M.S. (Matthijs) Berends
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c8c8bb4e3a
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(v1.3.0.9006) website update
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2020-08-21 11:40:13 +02:00 |
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dr. M.S. (Matthijs) Berends
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dab017a50f
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(v1.3.0.9004) data sets, as.disk() improvement
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2020-08-16 21:38:42 +02:00 |
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dr. M.S. (Matthijs) Berends
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e73f0e211c
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(v1.3.0.9003) as.rsi() speed improvement
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2020-08-15 12:54:47 +02:00 |
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dr. M.S. (Matthijs) Berends
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08d62bb5d5
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(v1.3.0.9002) intrinsic_resistant data set
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2020-08-14 13:36:10 +02:00 |
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dr. M.S. (Matthijs) Berends
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7d16bec21f
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(v1.3.0.9001) website update
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2020-08-10 12:46:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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0d9602a6a9
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(v1.3.0.9000) support across() in as.rsi()
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2020-08-10 11:44:58 +02:00 |
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dr. M.S. (Matthijs) Berends
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c5f7294381
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(v1.3.0) skip more CRAN tests
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2020-07-31 10:50:08 +02:00 |
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dr. M.S. (Matthijs) Berends
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c8edcb7439
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(v1.3.0) small fixes
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2020-07-30 15:15:52 +02:00 |
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dr. M.S. (Matthijs) Berends
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ea4e5e5b81
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(v1.3.0) v1.3.0
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2020-07-29 13:48:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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de0f7b8950
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(v1.2.0.9040) conserve_capped_values for as.rsi()
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2020-07-29 12:47:58 +02:00 |
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dr. M.S. (Matthijs) Berends
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e7def0aa4c
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(v1.2.0.9039) conserve_capped_values for as.rsi()
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2020-07-29 11:46:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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453f7f210b
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(v1.2.0.9038) CLSI 2019 fix
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2020-07-29 10:33:47 +02:00 |
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dr. M.S. (Matthijs) Berends
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1b65d76cfb
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(v1.2.0.9037) survey on website
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2020-07-28 18:39:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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09fba38ea6
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(v1.2.0.9035) as.mo() speed improvement
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2020-07-22 10:24:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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c0cf7ab02b
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(v1.2.0.9033) speed improvement mdro(), filter_ab_class()
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2020-07-12 11:43:31 +02:00 |
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dr. M.S. (Matthijs) Berends
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76fc8e1b14
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(v1.2.0.9026) move to github
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2020-07-08 14:48:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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152ac5bcad
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(v1.2.0.9023) ab_from_text() improvement
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2020-07-02 21:12:52 +02:00 |
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dr. M.S. (Matthijs) Berends
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298e67a45b
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(v1.2.0.9022) as.ab() improvement
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2020-07-01 16:21:36 +02:00 |
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dr. M.S. (Matthijs) Berends
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329a0eb0b6
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(v1.2.0.9019) ab_from_text() dose and administration
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2020-07-01 11:07:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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4f6f056077
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(v1.2.0.9017) ab_from_text() improvement
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2020-06-26 12:31:27 +02:00 |
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dr. M.S. (Matthijs) Berends
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344bbd57f4
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(v1.2.0.9014) ab_from_text()
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2020-06-25 17:34:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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8a66e475d7
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(v1.2.0.9013) unit test fix
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2020-06-22 13:18:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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93a158aebd
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(v1.2.0.9011) mo_domain(), improved error handling
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2020-06-22 11:18:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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e88d7853f5
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(v1.2.0.9010) documentation fix
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2020-06-17 21:35:10 +02:00 |
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dr. M.S. (Matthijs) Berends
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ac12392da3
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(v1.2.0.9008) ab_class improvement
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2020-06-17 15:14:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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c4d7412f36
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(v1.2.0.9007) Tidyverse selections
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2020-06-17 01:39:30 +02:00 |
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dr. M.S. (Matthijs) Berends
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8b692ecfcf
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(v1.2.0.9004) rsi_df() fix for groups
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2020-06-09 16:18:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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5dc4c96b7d
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(v1.2.0.9001) filter_ab_class() update
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2020-06-03 11:48:00 +02:00 |
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dr. M.S. (Matthijs) Berends
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d9a4b0bcaf
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(v1.1.0.9021) 1st isolates update
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2020-05-28 10:51:56 +02:00 |
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dr. M.S. (Matthijs) Berends
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86d44054f0
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(v1.1.0.9020) updated taxonomy
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2020-05-27 16:37:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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ae1969b941
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(v1.1.0.9019) mo_source fix
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2020-05-25 01:01:14 +02:00 |