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7258a491b9
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(v2.1.1.9068) fix for mo_url() and as.mo() for synonyms
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2024-07-17 14:29:55 +02:00 |
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640888f408
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(v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update
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2024-07-16 14:53:17 +02:00 |
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c67d003e9e
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(v2.1.1.9060) SDD results now in as.sir()
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2024-06-19 15:08:23 +02:00 |
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4ffac7e22d
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(v2.1.1.9051) fix VGS mo code
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2024-06-16 11:28:56 +02:00 |
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bdbf5198a2
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(v2.1.1.9050) vctrs fix for sir, small documentation fixes
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2024-06-15 15:33:49 +02:00 |
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9bf7584d58
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(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
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2024-06-14 22:39:01 +02:00 |
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de17de1be9
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(v2.1.1.9048) vctrs update for sir
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2024-06-13 20:55:17 +02:00 |
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3179216c81
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(v2.1.1.9047) unit test and index
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2024-06-13 07:37:53 +02:00 |
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a3071cf58b
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(v2.1.1.9042) update translations and example isolates
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2024-06-09 11:31:04 +02:00 |
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af74e1d4f2
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(v2.1.1.9041) antibiotics update
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2024-06-08 17:35:25 +02:00 |
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7be4dabbc0
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support veterinary MIC/disk translation
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2024-02-24 15:16:52 +01:00 |
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bcab4bc9ba
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Fixes #123
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2023-10-20 15:07:11 +02:00 |
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7cda9e575b
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prepare for CRAN
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2023-10-20 14:51:48 +02:00 |
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7a4628b73f
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Added C. freundii complex and Y. pseudotuberculosis complex
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2023-07-14 10:49:06 +02:00 |
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e1b4f99f4f
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breakpoints fixes
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2023-07-12 15:20:04 +01:00 |
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0c46f61260
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MO group fixes
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2023-07-12 15:04:48 +01:00 |
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7cd9ca274c
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add strep groups to ABCG
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2023-07-12 11:41:25 +01:00 |
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5e1221bceb
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unit test
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2023-07-10 19:04:12 +02:00 |
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70c601ca11
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breakpoints UTI interpretation fix
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2023-07-10 13:41:52 +02:00 |
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acb534102b
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new species groups, updated clinical breakpoints
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2023-07-08 17:30:05 +02:00 |
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Dr. Matthijs Berends
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f065945d7b
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Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
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2023-06-22 15:10:59 +02:00 |
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c6135d2082
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updated microorganism codes
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2023-05-26 16:10:01 +02:00 |
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91fa73dedf
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add oxygen tolerance
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2023-05-11 21:56:27 +02:00 |
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9148a2dcf4
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fix mo_rank() for 'unknown' MOs
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2023-04-20 15:20:41 +02:00 |
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02322ac2ee
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Fix PK/PD breakpoints
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2023-04-19 00:31:31 +02:00 |
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1a02d302d4
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Fix translatable strings
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2023-04-15 09:32:13 +02:00 |
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ed70f95380
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Fix clinical breakpoints
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2023-04-14 23:14:34 +02:00 |
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147f9112e9
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Fix some WHONET codes
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2023-04-14 11:12:26 +02:00 |
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4416394e10
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website update
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2023-02-26 21:26:58 +01:00 |
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c2cfc5ef84
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fix for antibiogram(), transform WHONET data set to sir
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2023-02-22 15:40:05 +01:00 |
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dad25302f2
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make rsi work in more cases, documentation update
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2023-02-22 14:38:57 +01:00 |
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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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f0a2cdbf5e
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update mo algorithm
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2022-12-20 16:14:04 +01:00 |
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b1b7534c78
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incorporate Bartlett et al (2022)
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2022-12-19 15:32:41 +01:00 |
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23fe427cbc
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Fixes for Salmonella
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2022-12-17 14:31:33 +01:00 |
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5f3a7694aa
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microorganisms update, added Salmonella groups
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2022-12-16 16:10:43 +01:00 |
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8da2467209
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updated taxonomy
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2022-12-12 00:14:56 +01:00 |
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56dad34e68
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update prevalence with new phyla
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2022-12-09 13:37:08 +01:00 |
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f6862a139d
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expert rules 12.0
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2022-11-14 15:20:39 +01:00 |
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Dr. Matthijs Berends
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496c08d851
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Implement extensive support for antiviral agents support (#77)
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2022-11-13 08:46:10 +01:00 |
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796b972f8a
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extend vctrs support
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2022-10-31 11:19:06 +01:00 |
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9444ed6d1d
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fix antibiotics error
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2022-10-30 21:05:46 +01:00 |
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d40e0ef20b
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completely updated antibiotics
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2022-10-30 14:31:45 +01:00 |
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3d9faf89cf
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ATC and DDD update
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2022-10-29 19:01:23 +02:00 |
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6ad7857d39
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fix missing R breakpoints
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2022-10-29 14:15:23 +02:00 |
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c2801ba7a1
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new rsi_translation
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2022-10-22 22:00:15 +02:00 |
|
Dr. Matthijs Berends
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cd2acc4a29
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New mo algorithm, prepare for 2.0
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2022-10-05 09:12:22 +02:00 |
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71db246d5c
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unit test fix
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2022-08-28 19:17:12 +02:00 |
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303d61b473
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new tibble export
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2022-08-27 20:49:37 +02:00 |
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