Commit Graph

1377 Commits

Author SHA1 Message Date
Emil Rossing 74ea6c8c60
Added support for 'html' in italicize_taxonomy() (#134) 2024-02-13 13:47:07 +01:00
dr. M.S. (Matthijs) Berends 83e92fd88c docu fix 2023-12-04 08:19:02 +01:00
dr. M.S. (Matthijs) Berends 7059568581 fix scale functions 2023-12-03 16:51:54 +01:00
dr. M.S. (Matthijs) Berends c7461766ce Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
dr. M.S. (Matthijs) Berends 6f417d0ef2 add `scale_x_mic()` 2023-12-03 01:06:00 +01:00
dr. M.S. (Matthijs) Berends 4c11a7bd9c v2.1.1 2023-10-22 15:51:27 +02:00
dr. M.S. (Matthijs) Berends ca72a646d0 scientific notation for MICs 2023-10-20 15:45:00 +02:00
dr. M.S. (Matthijs) Berends bcab4bc9ba Fixes #123 2023-10-20 15:07:11 +02:00
dr. M.S. (Matthijs) Berends 7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
dr. M.S. (Matthijs) Berends 7dc96794be fix rounding MICs on R-devel 2023-07-20 08:24:27 +02:00
dr. M.S. (Matthijs) Berends a2cbbf470e AMR v2.1.0 pre-release 2023-07-16 16:18:53 +02:00
dr. M.S. (Matthijs) Berends 7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
dr. M.S. (Matthijs) Berends fd480d1a9a console hyperlink fix 2023-07-14 09:50:13 +02:00
dr. M.S. (Matthijs) Berends 08f7256852 include unit tests again 2023-07-13 12:45:14 +01:00
dr. M.S. (Matthijs) Berends ddd01f9410 test to remove unit tests from build 2023-07-13 09:42:37 +01:00
dr. M.S. (Matthijs) Berends eff164ecb1 indicate unique identifiers 2023-07-12 21:26:32 +02:00
dr. M.S. (Matthijs) Berends ea2a4652e9 mouse-hover fixes 2023-07-12 15:27:43 +01:00
dr. M.S. (Matthijs) Berends e1b4f99f4f breakpoints fixes 2023-07-12 15:20:04 +01:00
dr. M.S. (Matthijs) Berends 0c46f61260 MO group fixes 2023-07-12 15:04:48 +01:00
dr. M.S. (Matthijs) Berends 9cf054903b version bump 2023-07-12 11:42:29 +01:00
dr. M.S. (Matthijs) Berends 7cd9ca274c add strep groups to ABCG 2023-07-12 11:41:25 +01:00
dr. M.S. (Matthijs) Berends 66eeeb4b88 cleanup 2023-07-11 14:29:40 +02:00
dr. M.S. (Matthijs) Berends 8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
dr. M.S. (Matthijs) Berends 5e1221bceb unit test 2023-07-10 19:04:12 +02:00
dr. M.S. (Matthijs) Berends dab20c09f6 unit test 2023-07-10 18:30:26 +02:00
dr. M.S. (Matthijs) Berends 1b499bf012 fixes 2023-07-10 17:02:28 +02:00
dr. M.S. (Matthijs) Berends a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate 2023-07-10 16:43:46 +02:00
dr. M.S. (Matthijs) Berends 70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
dr. M.S. (Matthijs) Berends 3829311dd3 random() fix 2023-07-08 21:00:49 +02:00
dr. M.S. (Matthijs) Berends acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
dr. M.S. (Matthijs) Berends 2d97cca6d9 fix `reference_df` endless loop 2023-06-26 13:52:02 +02:00
dr. M.S. (Matthijs) Berends 1d9ee39cc7 fix for mo codes 2023-06-22 15:24:18 +02:00
Dr. Matthijs Berends f065945d7b
Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
dr. M.S. (Matthijs) Berends 9591688811 documentation update 2023-05-27 10:39:22 +02:00
dr. M.S. (Matthijs) Berends e1966503ee unit testing R4.3 2023-05-26 20:37:00 +02:00
dr. M.S. (Matthijs) Berends 766db4e21f as.mo fix 2023-05-26 19:20:21 +02:00
dr. M.S. (Matthijs) Berends c6135d2082 updated microorganism codes 2023-05-26 16:10:01 +02:00
dr. M.S. (Matthijs) Berends 0bcf55d3b6 improve `as.mo()` 2023-05-24 15:55:53 +02:00
dr. M.S. (Matthijs) Berends 3018fb87a9 `icu_exclude` in `first_isolate()`, fixes #110 2023-05-17 22:12:10 +02:00
Dr. Matthijs Berends 5f9769a4f7
Add oxygen tolerance 2023-05-12 10:37:07 +02:00
dr. M.S. (Matthijs) Berends 8179092c57 add XPT files for SAS software 2023-05-12 10:07:55 +02:00
dr. M.S. (Matthijs) Berends 91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends bf08d136a0 fix coercing `NA` to custom codes, fixes #107 2023-05-08 13:04:18 +02:00
dr. M.S. (Matthijs) Berends 9de19fdc49 documentation 2023-04-21 10:07:25 +02:00
dr. M.S. (Matthijs) Berends 9148a2dcf4 fix `mo_rank()` for 'unknown' MOs 2023-04-20 15:20:41 +02:00
dr. M.S. (Matthijs) Berends 2758615cd0 version fix 2023-04-19 00:34:41 +02:00
dr. M.S. (Matthijs) Berends 02322ac2ee Fix PK/PD breakpoints 2023-04-19 00:31:31 +02:00
dr. M.S. (Matthijs) Berends cabffb22fd anaerobic codes 2023-04-17 11:26:19 +02:00
dr. M.S. (Matthijs) Berends ad3061c754 unit test 2023-04-15 10:32:37 +02:00
dr. M.S. (Matthijs) Berends 1a02d302d4 Fix translatable strings 2023-04-15 09:32:13 +02:00