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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 11:26:11 +01:00
Commit Graph

40 Commits

Author SHA1 Message Date
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
bf08d136a0 fix coercing NA to custom codes, fixes #107 2023-05-08 13:04:18 +02:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
830c67f1bf documentation, unit tests 2023-01-24 10:20:27 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
ca79068604 Fix for adding MO's 2023-01-14 17:10:10 +01:00
08fe5a88c0 documentation 2023-01-07 01:54:46 +01:00
2375bfdcb5 documentation 2023-01-07 01:51:19 +01:00
84ed8c32bb documentation 2023-01-06 19:21:04 +01:00
f0a2cdbf5e update mo algorithm 2022-12-20 16:14:04 +01:00
b1b7534c78 incorporate Bartlett et al (2022) 2022-12-19 15:32:41 +01:00
eed1c14b96 website update 2022-12-11 11:44:29 +01:00
56dad34e68 update prevalence with new phyla 2022-12-09 13:37:08 +01:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
e7af5fc716 fix AMR vignette 2022-08-28 22:38:08 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
08d387b5ce (v1.8.0.9005) as.rsi() fix 2022-03-10 19:33:25 +01:00
18e8525d10 (v1.8.0.9001) as.mo improvement, fixes #52 2022-02-26 21:58:23 +01:00
e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
7965468ccd (v1.7.1.9058) vars selection for set_ab_names() 2021-12-05 22:06:45 +01:00
a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
bef0f42f66 (v1.7.0.9001) CLSI 2020 guideline 2021-06-01 15:33:06 +02:00
00d3e437a8 (v1.6.0.9003) like() fix 2021-04-16 11:41:05 +02:00
4e0a9533ad (v1.5.0.9041) SNOMED update 2021-03-11 21:42:30 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
128ebcfd62 (v1.4.0.9043) documentation update 2020-12-22 00:51:17 +01:00
423879c034 (v1.4.0.9012) reference_df fix 2020-11-05 01:11:49 +01:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
36ec8b0d81 (v1.3.0.9033) skimr fix 2020-09-28 11:00:59 +02:00
22f6ceb3e4 (v1.3.0.9031) matching score update 2020-09-26 16:51:17 +02:00
050a9a04fb (v1.3.0.9030) matching score update 2020-09-26 16:26:01 +02:00
c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
d049cce69b (v1.3.0.9023) optimalisation 2020-09-19 11:54:01 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00