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Commit Graph

1368 Commits

Author SHA1 Message Date
7dc96794be fix rounding MICs on R-devel 2023-07-20 08:24:27 +02:00
a2cbbf470e AMR v2.1.0 pre-release 2023-07-16 16:18:53 +02:00
7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
fd480d1a9a console hyperlink fix 2023-07-14 09:50:13 +02:00
08f7256852 include unit tests again 2023-07-13 12:45:14 +01:00
ddd01f9410 test to remove unit tests from build 2023-07-13 09:42:37 +01:00
eff164ecb1 indicate unique identifiers 2023-07-12 21:26:32 +02:00
ea2a4652e9 mouse-hover fixes 2023-07-12 15:27:43 +01:00
e1b4f99f4f breakpoints fixes 2023-07-12 15:20:04 +01:00
0c46f61260 MO group fixes 2023-07-12 15:04:48 +01:00
9cf054903b version bump 2023-07-12 11:42:29 +01:00
7cd9ca274c add strep groups to ABCG 2023-07-12 11:41:25 +01:00
66eeeb4b88 cleanup 2023-07-11 14:29:40 +02:00
8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
5e1221bceb unit test 2023-07-10 19:04:12 +02:00
dab20c09f6 unit test 2023-07-10 18:30:26 +02:00
1b499bf012 fixes 2023-07-10 17:02:28 +02:00
a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate 2023-07-10 16:43:46 +02:00
70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
3829311dd3 random() fix 2023-07-08 21:00:49 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
2d97cca6d9 fix reference_df endless loop 2023-06-26 13:52:02 +02:00
1d9ee39cc7 fix for mo codes 2023-06-22 15:24:18 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
e1966503ee unit testing R4.3 2023-05-26 20:37:00 +02:00
766db4e21f as.mo fix 2023-05-26 19:20:21 +02:00
c6135d2082 updated microorganism codes 2023-05-26 16:10:01 +02:00
0bcf55d3b6 improve as.mo() 2023-05-24 15:55:53 +02:00
3018fb87a9 icu_exclude in first_isolate(), fixes #110 2023-05-17 22:12:10 +02:00
Dr. Matthijs Berends
5f9769a4f7
Add oxygen tolerance 2023-05-12 10:37:07 +02:00
8179092c57 add XPT files for SAS software 2023-05-12 10:07:55 +02:00
91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
bf08d136a0 fix coercing NA to custom codes, fixes #107 2023-05-08 13:04:18 +02:00
9de19fdc49 documentation 2023-04-21 10:07:25 +02:00
9148a2dcf4 fix mo_rank() for 'unknown' MOs 2023-04-20 15:20:41 +02:00
2758615cd0 version fix 2023-04-19 00:34:41 +02:00
02322ac2ee Fix PK/PD breakpoints 2023-04-19 00:31:31 +02:00
cabffb22fd anaerobic codes 2023-04-17 11:26:19 +02:00
ad3061c754 unit test 2023-04-15 10:32:37 +02:00
1a02d302d4 Fix translatable strings 2023-04-15 09:32:13 +02:00
ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
549790c2a6 website 2023-03-20 21:59:50 +01:00
c28cfa3a77 fix documentation 2023-03-16 08:55:37 +01:00
dd7cc86485 help page %like% 2023-03-14 19:49:50 +01:00
68aa98f294 website 2023-03-12 15:59:25 +01:00
dee675e717 Version 2.0 on CRAN 2023-03-12 14:07:45 +01:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
9179e98e12 patient ID in first isolate 2023-03-11 17:13:19 +01:00