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Commit Graph

135 Commits

Author SHA1 Message Date
d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
3b84b8be75 v1.5.0 2021-01-06 11:16:17 +01:00
526f8afb08 (v1.4.0.9052) replaced all sapply's with type-safe vapply's 2020-12-28 22:24:33 +01:00
afc325c314 (v1.4.0.9050) ab selectors base R 2020-12-27 20:32:40 +01:00
8b52f9b1be (v1.4.0.9047) unit tests 2020-12-27 00:30:28 +01:00
df37584189 (v1.4.0.9044) mo tibble printing, mo_shortname() fix 2020-12-24 23:29:10 +01:00
128ebcfd62 (v1.4.0.9043) documentation update 2020-12-22 00:51:17 +01:00
2145f1d1ba (v1.4.0.9033) documentation update 2020-12-08 12:37:25 +01:00
1bdb136b3a (v1.4.0.9032) auto-data guessing for functions 2020-12-07 16:06:42 +01:00
01d9522434 (v1.4.0.9017) stringsAsFactors definitions 2020-11-11 16:49:27 +01:00
15c732703d (v1.4.0.9015) bugfix 2020-11-10 16:35:56 +01:00
5a607abb36 (v1.4.0.9011) message formatting 2020-10-27 15:56:51 +01:00
4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
c04dc852cf (v1.3.0.9039) lifecycle updates, added excess kurtosis 2020-10-04 21:02:16 +02:00
baf510183c (v1.3.0.9038) prefinal 1.4.0 2020-10-04 19:26:43 +02:00
3136bc54aa (v1.3.0.9037) pre-release 2020-09-30 10:54:23 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
ab60f613aa (v1.3.0.9020) fix for uncertainty in as.mo() 2020-09-14 19:41:48 +02:00
c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
09fba38ea6 (v1.2.0.9035) as.mo() speed improvement 2020-07-22 10:24:23 +02:00
6ab468362d (v1.2.0.9034) code cleaning 2020-07-13 09:17:24 +02:00
c0cf7ab02b (v1.2.0.9033) speed improvement mdro(), filter_ab_class() 2020-07-12 11:43:31 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
93a158aebd (v1.2.0.9011) mo_domain(), improved error handling 2020-06-22 11:18:40 +02:00
ac12392da3 (v1.2.0.9008) ab_class improvement 2020-06-17 15:14:37 +02:00
5216d2b520 (v1.1.0.9014) lose dependencies 2020-05-19 14:16:45 +02:00
f68d71a5e0 (v1.1.0.9007) lose dependencies 2020-05-16 21:40:50 +02:00
7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
ea32e9916a (v1.0.0.9005) info printing only in interactive mode 2020-02-21 21:13:38 +01:00
9b8b02960e (v0.9.0.9023) EUCAST 2020 guidelines 2020-02-14 19:54:13 +01:00
ced1a7b7fa (v0.9.0.9008) Happy new year! Add lifecycles 2020-01-05 17:22:09 +01:00
bb2ed55842 (v0.9.0) v0.9.0 2019-11-29 19:43:23 +01:00
9feef53bde (v0.8.0.9037) complete documentation rewrite 2019-11-28 23:00:37 +01:00
c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
267320f15f (v0.8.0.9033) antivirals data set, cleanup 2019-11-18 12:10:47 +01:00
d22834c5b8 (v0.8.0.9029) cleanup 2019-11-10 15:50:18 +01:00
e2d05cb1b0 (v0.8.0.9017) keywords update 2019-11-06 14:43:23 +01:00
a1fd2cd98a (v0.8.0.9014) unit test update 2019-11-05 22:23:45 +01:00
2560aa1a53 (v0.8.0.9013) unit test update 2019-11-05 21:52:58 +01:00
5345d2759a (v0.8.0.9012) mdro improvement 2019-11-05 11:28:52 +01:00
9060233953 (v0.8.0.9010) mdro bug fix 2019-11-04 11:35:34 +01:00
0bb531f3e0 (v0.8.0.9009) unit test 2019-11-03 22:41:29 +01:00
29e448883d (v0.8.0.9008) new verbose mode for MDROs 2019-11-03 22:24:42 +01:00
09c4b04cd0 (v0.8.0.9007) Enterobacterales order 2019-10-30 23:02:50 +01:00
412077a6f2 (v0.8.0.9005) fix unit tests 2019-10-26 22:21:26 +02:00
d2e8249edd (v0.8.0.9004) added MDR guideline by Magiorakos et al. 2019-10-26 21:56:41 +02:00
00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
f479dfce60 (v0.7.1.9097) mdro() examples fix 2019-10-07 14:57:27 +02:00
4e9c4c1b4e (v0.7.1.9096) German guideline for mdro() 2019-10-07 14:32:06 +02:00
b39e7feae6 (v0.7.1.9090) factor levels of mdr_tb 2019-09-26 21:58:06 +02:00
93be16484b (v0.7.1.9063) septic_patients -> example_isolates 2019-08-27 16:45:42 +02:00
b15d59cf03 (v0.7.1.9009) note for WHOCC 2019-07-09 11:22:46 +02:00
c57ad26c5b (v0.7.1.9007) mdro update 2019-07-04 15:26:07 +02:00
270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
7e0e171512 website update 2019-05-23 19:39:07 +02:00
60983a1640 added mdr_tb() 2019-05-23 16:58:59 +02:00
07d26cd485 faster determination of abx 2019-05-20 19:12:41 +02:00
6eb08a2ea3 new git flow to repository 2019-05-20 14:16:53 +02:00
4ca00e1868 speed improvement eucast_rules(), support more old MO codes 2019-05-20 12:00:18 +02:00
0dc0715dc6 CI tests 2019-05-13 12:21:57 +02:00
fcc77164e9 mdro fix 2019-05-11 23:30:10 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
461eec9bac cfta streptococci, codecov.yml 2019-04-09 14:59:17 +02:00
fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
046d195064 resistance predict 2019-01-15 12:45:24 +01:00
641d866db2 guess_ab_col, benchmarks 2019-01-11 20:37:23 +01:00
80ea555663 guess_ab 2019-01-03 23:56:19 +01:00
6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
0b8084871d dplyr 0.8.0 support, fixes #7 2018-12-22 22:39:34 +01:00
b937662a97 limits for scale_y_percent - Licence update 2018-12-16 22:45:12 +01:00
8e8a9cd190 AI improvements 2018-12-07 12:04:55 +01:00
4fcc2b409a MDRO update 2018-11-16 20:50:50 +01:00
ee664f2a4c small fix 2018-11-05 15:36:07 +01:00
5476fecc73 eucast update 2018-11-01 20:23:33 +01:00
707aa20a37 fixes 2018-10-23 14:59:36 +02:00
7997de6a6d mdro and 1st isolate improvements 2018-10-23 11:15:05 +02:00
5965d3c794 replaced bactid by mo 2018-08-31 13:36:19 +02:00
uscloud
dcc26dd942 Update freq function 2018-05-22 16:34:22 +02:00
970e3ed7f1 EUCAST rules for MDRO 2018-04-25 15:33:58 +02:00
82fec5cc51 Try to support older R versions 2018-04-19 14:10:57 +02:00
2509e2413d MDRO, freq tables, new print format for tibbles 2018-04-18 12:24:54 +02:00