dr. M.S. (Matthijs) Berends
89c447b290
Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102 , fixes #112 , fixes #113 , fixes #114 , fixes #115
2023-06-09 22:30:43 +02:00
dr. M.S. (Matthijs) Berends
c6135d2082
updated microorganism codes
2023-05-26 16:10:01 +02:00
dr. M.S. (Matthijs) Berends
91fa73dedf
add oxygen tolerance
2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends
9148a2dcf4
fix mo_rank() for 'unknown' MOs
2023-04-20 15:20:41 +02:00
dr. M.S. (Matthijs) Berends
02322ac2ee
Fix PK/PD breakpoints
2023-04-19 00:31:31 +02:00
dr. M.S. (Matthijs) Berends
1a02d302d4
Fix translatable strings
2023-04-15 09:32:13 +02:00
dr. M.S. (Matthijs) Berends
ed70f95380
Fix clinical breakpoints
2023-04-14 23:14:34 +02:00
dr. M.S. (Matthijs) Berends
147f9112e9
Fix some WHONET codes
2023-04-14 11:12:26 +02:00
dr. M.S. (Matthijs) Berends
4416394e10
website update
2023-02-26 21:26:58 +01:00
dr. M.S. (Matthijs) Berends
c2cfc5ef84
fix for antibiogram(), transform WHONET data set to sir
2023-02-22 15:40:05 +01:00
dr. M.S. (Matthijs) Berends
dad25302f2
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
dr. M.S. (Matthijs) Berends
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends
f0a2cdbf5e
update mo algorithm
2022-12-20 16:14:04 +01:00
dr. M.S. (Matthijs) Berends
b1b7534c78
incorporate Bartlett et al (2022)
2022-12-19 15:32:41 +01:00
dr. M.S. (Matthijs) Berends
23fe427cbc
Fixes for Salmonella
2022-12-17 14:31:33 +01:00
dr. M.S. (Matthijs) Berends
5f3a7694aa
microorganisms update, added Salmonella groups
2022-12-16 16:10:43 +01:00
dr. M.S. (Matthijs) Berends
8da2467209
updated taxonomy
2022-12-12 00:14:56 +01:00
dr. M.S. (Matthijs) Berends
56dad34e68
update prevalence with new phyla
2022-12-09 13:37:08 +01:00
dr. M.S. (Matthijs) Berends
f6862a139d
expert rules 12.0
2022-11-14 15:20:39 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support ( #77 )
2022-11-13 08:46:10 +01:00
dr. M.S. (Matthijs) Berends
796b972f8a
extend vctrs support
2022-10-31 11:19:06 +01:00
dr. M.S. (Matthijs) Berends
9444ed6d1d
fix antibiotics error
2022-10-30 21:05:46 +01:00
dr. M.S. (Matthijs) Berends
d40e0ef20b
completely updated antibiotics
2022-10-30 14:31:45 +01:00
dr. M.S. (Matthijs) Berends
3d9faf89cf
ATC and DDD update
2022-10-29 19:01:23 +02:00
dr. M.S. (Matthijs) Berends
6ad7857d39
fix missing R breakpoints
2022-10-29 14:15:23 +02:00
dr. M.S. (Matthijs) Berends
c2801ba7a1
new rsi_translation
2022-10-22 22:00:15 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends
71db246d5c
unit test fix
2022-08-28 19:17:12 +02:00
dr. M.S. (Matthijs) Berends
303d61b473
new tibble export
2022-08-27 20:49:37 +02:00
dr. M.S. (Matthijs) Berends
952d16de33
new, automated website
2022-08-21 16:37:20 +02:00
dr. M.S. (Matthijs) Berends
3f2f60ab77
language updates
2022-08-19 12:33:14 +02:00
dr. M.S. (Matthijs) Berends
ab97268f4c
(v1.8.1.9014) add Toxoplasma
2022-08-12 23:27:15 +02:00
dr. M.S. (Matthijs) Berends
7f981e7778
(v1.8.1.9013) add Toxoplasma
2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends
b84d647cac
(v1.8.1.9012) update prevalence of some genera
2022-06-03 13:28:55 +02:00
dr. M.S. (Matthijs) Berends
859224e9d0
(v1.8.1.9006) added EUCAST 2022 and CLSI 2022
2022-05-10 21:34:30 +02:00
dr. M.S. (Matthijs) Berends
680e8e7a41
(v1.8.1.9005) as.rsi() fix for EUCAST
2022-05-10 17:01:37 +02:00
dr. M.S. (Matthijs) Berends
76dee66852
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
dr. M.S. (Matthijs) Berends
bd4bb1d72f
(v1.7.1.9073) as.rsi() fix for UTIs
2021-12-14 21:47:14 +01:00
dr. M.S. (Matthijs) Berends
0cbf8f48b6
(v1.7.1.9071) rsi disk fix
2021-12-13 11:57:34 +01:00
dr. M.S. (Matthijs) Berends
578e7dfee9
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends
f90e27c1b0
(v1.7.1.9069) CLSI 2021 support
2021-12-12 11:36:58 +01:00
dr. M.S. (Matthijs) Berends
77ba4318ea
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends
5375f75829
(v1.7.1.9056) unit tests
2021-11-29 11:55:18 +01:00
dr. M.S. (Matthijs) Berends
c8698347cb
(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
2021-11-29 10:38:38 +01:00
dr. M.S. (Matthijs) Berends
694cf5ba77
(v1.7.1.9054) mdro() update - fixes #49 , first_isolate() speedup
2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends
37e6e35ec4
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends
8f5e5a3fc2
(v1.7.1.9050) fix for as.mo
2021-10-05 14:00:35 +02:00
dr. M.S. (Matthijs) Berends
2ab21b7af3
(v1.7.1.9026) updated DDDs
2021-08-19 23:43:02 +02:00
dr. M.S. (Matthijs) Berends
a2d249962f
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
2021-08-16 21:54:34 +02:00
