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e601fd259a
|
test syntax fix
|
2018-11-01 20:50:10 +01:00 |
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|
5476fecc73
|
eucast update
|
2018-11-01 20:23:33 +01:00 |
|
|
|
f7687557c9
|
eucast updates
|
2018-11-01 17:06:08 +01:00 |
|
|
|
9cd4ab928a
|
speed improvement as.mo, freq title
|
2018-10-31 12:10:49 +01:00 |
|
|
|
1bf8dc2983
|
as.mo speedup: assigned to namespace
|
2018-10-29 17:26:17 +01:00 |
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|
707aa20a37
|
fixes
|
2018-10-23 14:59:36 +02:00 |
|
|
|
7997de6a6d
|
mdro and 1st isolate improvements
|
2018-10-23 11:15:05 +02:00 |
|
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|
299c5bea43
|
na freq, removed factors
|
2018-10-23 09:42:26 +02:00 |
|
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|
9c56257da1
|
freq - print title bold in markdown
|
2018-10-22 13:06:54 +02:00 |
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|
c2a93b46db
|
breaks param, tidyr dep change, freq markdown
|
2018-10-22 12:32:59 +02:00 |
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|
ec15b82fd6
|
param header for freq
|
2018-10-19 21:52:08 +02:00 |
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|
86b03577a7
|
fix for as.mo, added also_single_tested
|
2018-10-19 13:53:31 +02:00 |
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|
032c0d51ef
|
better verbose in EUCAST
|
2018-10-19 00:57:10 +02:00 |
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|
b464dd524a
|
new verbose
|
2018-10-19 00:17:03 +02:00 |
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|
0ef91be3ac
|
param rules for EUCAST
|
2018-10-18 12:10:10 +02:00 |
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|
693f64bdbf
|
new EUCAST rules: clinical breakpoints
|
2018-10-17 17:32:34 +02:00 |
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|
d5a41de711
|
parameter combine_IR
|
2018-10-16 09:59:31 +02:00 |
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|
5b5b95a47b
|
count_all and some fixes
|
2018-10-12 16:35:18 +02:00 |
|
|
|
e7d937d36e
|
update NEWS
|
2018-10-10 10:50:19 +02:00 |
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|
67521394f6
|
more unit tests
|
2018-10-09 15:41:44 +02:00 |
|
|
|
95c9fdc552
|
CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
|
2018-10-09 13:53:33 +02:00 |
|
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|
6d761436f7
|
benchmarks on readme and speed improvement for direct mo codes
|
2018-10-01 16:26:02 +02:00 |
|
|
|
ed17db0263
|
renamed year columns to ref
|
2018-10-01 14:44:40 +02:00 |
|
|
|
3119a221e5
|
authors from ITIS, diff for freq
|
2018-10-01 11:39:43 +02:00 |
|
|
|
92c9cc2608
|
diff for freq, fix for mo_shortname
|
2018-09-29 21:54:32 +02:00 |
|
|
|
a6aa9e95fb
|
completed old taxonomic names
|
2018-09-28 20:13:13 +02:00 |
|
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|
768fe17324
|
removed clipboard functions as it violated CRAN policies
|
2018-09-28 16:05:18 +02:00 |
|
|
|
2b0080995e
|
speed improvement for as.mo, more old taxonomic names
|
2018-09-27 23:23:48 +02:00 |
|
|
|
450992baea
|
new: 1680 old taxonomic names
|
2018-09-25 16:44:40 +02:00 |
|
|
|
9c566585b0
|
first inclusion of ITIS data
|
2018-09-24 23:33:29 +02:00 |
|
|
|
5d80cef338
|
added taxonomic data from ITIS
|
2018-09-17 20:53:32 +02:00 |
|
|
|
7680e4edd8
|
add shortest and longest to freq for characters
|
2018-09-17 09:42:09 +02:00 |
|
|
|
db14781593
|
add labels_rsi_count
|
2018-09-16 22:11:17 +02:00 |
|
|
|
b792a2754e
|
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
|
2018-09-16 16:43:29 +02:00 |
|
|
|
b0ca49d68d
|
small improvement for is.rsi.eligible, more unit tests
|
2018-09-14 11:54:01 +02:00 |
|
|
|
cf5711fb0b
|
algorithm improvement
|
2018-09-14 10:31:21 +02:00 |
|
|
|
d049ec9e69
|
ggplot2_rsi fix
|
2018-09-13 14:48:34 +02:00 |
|
|
|
cb0d74a4f0
|
support for French and Italian, added quote to freq
|
2018-09-10 15:45:25 +02:00 |
|
|
|
b83e6a9380
|
algoritm improvement, removed all Catabacter except for C. hongkongensis
|
2018-09-10 11:40:54 +02:00 |
|
|
|
4816419f0c
|
AI improvements for microorganisms
|
2018-09-09 12:11:44 +02:00 |
|
|
|
936198372e
|
translate CoNS
|
2018-09-08 16:24:12 +02:00 |
|
|
|
26f5be0033
|
support for portuguese, language determination based on system
|
2018-09-08 16:06:47 +02:00 |
|
|
|
c5073f2fd1
|
small fix for microorganisms data set
|
2018-09-06 16:50:03 +02:00 |
|
|
|
de36b0be23
|
fix for empty values in mo_property
|
2018-09-05 12:21:27 +02:00 |
|
|
|
e39a9a8b05
|
added mo_shortname
|
2018-09-05 10:51:46 +02:00 |
|
|
|
790bd1622d
|
added vanA to vanE positive Enterococci
|
2018-09-05 09:49:19 +02:00 |
|
|
|
b388e3fee7
|
Support for German and Spanish microorganism properties, cleanup
|
2018-09-04 11:33:30 +02:00 |
|
|
|
e25dd0e282
|
fix for joins
|
2018-09-03 10:04:49 +02:00 |
|
|
|
75fe4d401f
|
new MOs, cleanup
|
2018-09-01 21:19:46 +02:00 |
|
|
|
5965d3c794
|
replaced bactid by mo
|
2018-08-31 13:36:19 +02:00 |
|
|
|
98ff131680
|
support for older versions of ggplot2
|
2018-08-29 16:39:28 +02:00 |
|
|
|
d654444c8e
|
re added nrow
|
2018-08-29 16:35:32 +02:00 |
|
|
|
d9e68e0a50
|
ggplot_rsi example update, more unit tests
|
2018-08-29 16:25:57 +02:00 |
|
|
|
029157b3be
|
163 new trade names, added ab_tradenames
|
2018-08-29 12:27:37 +02:00 |
|
|
|
972fc4f6c7
|
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
|
2018-08-28 13:51:13 +02:00 |
|
|
|
2acdb1981c
|
atc and bactid functions, readme update
|
2018-08-25 22:01:14 +02:00 |
|
|
|
baaf4cc3e1
|
few extra tests
|
2018-08-24 14:18:38 +02:00 |
|
|
|
a100d07da6
|
removed ratio, better rsi_calc, update for freq
|
2018-08-24 11:08:20 +02:00 |
|
|
|
febd0ca885
|
geom_rsi - any parameter
|
2018-08-23 21:27:15 +02:00 |
|
|
|
da5379c881
|
quasiquotation, alpha for geom_rsi
|
2018-08-23 00:40:36 +02:00 |
|
|
|
3e87c8f409
|
count_* functions
|
2018-08-22 00:02:26 +02:00 |
|
|
|
59ce1eb1b1
|
ggplot_rsi improvements
|
2018-08-13 16:42:37 +02:00 |
|
|
|
dba06c3295
|
abname improvement, small fixes
|
2018-08-13 11:00:53 +02:00 |
|
|
|
ce2cdb9309
|
support groups for portion_df, update README
|
2018-08-12 22:34:03 +02:00 |
|
|
|
e5d32cafe0
|
new unit tests for ggplot, small fixes
|
2018-08-12 17:44:06 +02:00 |
|
|
|
1ba7d883fe
|
new ggplot enhancement
|
2018-08-11 21:30:00 +02:00 |
|
|
|
53fa198e35
|
new portion functions
|
2018-08-10 15:01:05 +02:00 |
|
|
|
ae2433a020
|
rsi family for resistance analysis
|
2018-08-03 14:49:29 +02:00 |
|
|
|
227121af3d
|
add Dialister to microorganisms
|
2018-08-03 11:46:06 +02:00 |
|
|
|
db5a0d32a5
|
typos of Becker algorithm
|
2018-08-03 10:58:48 +02:00 |
|
|
|
bd9bcfef78
|
thesis advisors
|
2018-08-03 09:59:39 +02:00 |
|
|
|
6262315527
|
Becker classification
Lancefield classification
Added Lancefield groups to `microorganisms` data set
|
2018-08-02 13:15:45 +02:00 |
|
|
|
edd2dd09dc
|
rsi for freq
|
2018-08-01 22:37:28 +02:00 |
|
|
|
d8f70a74de
|
clipboard error
|
2018-08-01 10:32:24 +02:00 |
|
|
|
a59d0661f7
|
check CMD error
|
2018-08-01 09:45:11 +02:00 |
|
|
|
7c667eb732
|
emph guess_bactid
|
2018-08-01 08:03:31 +02:00 |
|
|
|
211e3bae14
|
remove reshape2 dependency
|
2018-07-30 01:18:40 +02:00 |
|
|
|
510e8f22aa
|
more unit tests
|
2018-07-30 00:57:49 +02:00 |
|
|
|
d0a115d995
|
bactid speed improvement
|
2018-07-30 00:14:06 +02:00 |
|
|
|
826694323b
|
new functions R, RI, SI, S
|
2018-07-29 22:14:51 +02:00 |
|
|
|
8421e3f005
|
more mic classes
|
2018-07-28 10:48:27 +02:00 |
|
|
|
feab1cad6b
|
small fixes
|
2018-07-28 09:34:03 +02:00 |
|
|
|
498e88b5cf
|
improvement for forecasting resistance
|
2018-07-26 16:30:42 +02:00 |
|
|
|
d9e204031d
|
update to septic_patients, speed improvements
|
2018-07-25 14:17:04 +02:00 |
|
|
|
03a3cb397b
|
clipboard update
|
2018-07-23 15:09:19 +02:00 |
|
|
|
8421638b60
|
new class bactid
|
2018-07-23 14:14:03 +02:00 |
|
|
|
9920ac8a5c
|
fix for keyab, more examples
|
2018-07-23 10:35:39 +02:00 |
|
|
|
ad662d7bab
|
new col names for key_antibiotics
|
2018-07-19 15:11:23 +02:00 |
|
|
|
0d64c166f0
|
keyab fixes
|
2018-07-17 19:51:09 +02:00 |
|
|
|
2a4d759fbc
|
check fails
|
2018-07-17 14:48:11 +02:00 |
|
|
|
5cb9c541f8
|
new algorithm key abs
|
2018-07-17 13:02:05 +02:00 |
|
|
|
a5a4354651
|
speed improvements
|
2018-07-17 10:32:26 +02:00 |
|
|
|
715a7630ca
|
support format.freq
|
2018-07-16 16:41:48 +02:00 |
|
|
|
6eaf33baf3
|
speed improvements
|
2018-07-15 22:56:41 +02:00 |
|
|
|
b6655f6454
|
Welcome C++!
|
2018-07-13 17:23:46 +02:00 |
|
|
|
a28289562a
|
remove print function, out of scope
|
2018-07-11 20:12:19 +02:00 |
|
|
|
e3e10c2e88
|
fix for macOS and older tidyr versions
|
2018-07-11 12:34:02 +02:00 |
|
|
|
f63414d519
|
new g.test, extra unit tests
|
2018-07-10 12:27:07 +02:00 |
|
|
|
fc30d3fb13
|
freq: support for table
|
2018-07-09 14:02:58 +02:00 |
|
|
|
14b990d769
|
kurtosis, skewness, start with ML
|
2018-07-08 22:14:55 +02:00 |
|
