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Commit Graph

1456 Commits

Author SHA1 Message Date
66eeeb4b88 cleanup 2023-07-11 14:29:40 +02:00
8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
5e1221bceb unit test 2023-07-10 19:04:12 +02:00
dab20c09f6 unit test 2023-07-10 18:30:26 +02:00
1b499bf012 fixes 2023-07-10 17:02:28 +02:00
a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate 2023-07-10 16:43:46 +02:00
70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
3829311dd3 random() fix 2023-07-08 21:00:49 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
2d97cca6d9 fix reference_df endless loop 2023-06-26 13:52:02 +02:00
1d9ee39cc7 fix for mo codes 2023-06-22 15:24:18 +02:00
Dr. Matthijs Berends
f065945d7b
Update clinical breakpoints and fix some as.mo() bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
e1966503ee unit testing R4.3 2023-05-26 20:37:00 +02:00
766db4e21f as.mo fix 2023-05-26 19:20:21 +02:00
c6135d2082 updated microorganism codes 2023-05-26 16:10:01 +02:00
0bcf55d3b6 improve as.mo() 2023-05-24 15:55:53 +02:00
3018fb87a9 icu_exclude in first_isolate(), fixes #110 2023-05-17 22:12:10 +02:00
Dr. Matthijs Berends
5f9769a4f7
Add oxygen tolerance 2023-05-12 10:37:07 +02:00
8179092c57 add XPT files for SAS software 2023-05-12 10:07:55 +02:00
91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
bf08d136a0 fix coercing NA to custom codes, fixes #107 2023-05-08 13:04:18 +02:00
9de19fdc49 documentation 2023-04-21 10:07:25 +02:00
9148a2dcf4 fix mo_rank() for 'unknown' MOs 2023-04-20 15:20:41 +02:00
2758615cd0 version fix 2023-04-19 00:34:41 +02:00
02322ac2ee Fix PK/PD breakpoints 2023-04-19 00:31:31 +02:00
cabffb22fd anaerobic codes 2023-04-17 11:26:19 +02:00
ad3061c754 unit test 2023-04-15 10:32:37 +02:00
1a02d302d4 Fix translatable strings 2023-04-15 09:32:13 +02:00
ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
549790c2a6 website 2023-03-20 21:59:50 +01:00
c28cfa3a77 fix documentation 2023-03-16 08:55:37 +01:00
dd7cc86485 help page %like% 2023-03-14 19:49:50 +01:00
68aa98f294 website 2023-03-12 15:59:25 +01:00
dee675e717 Version 2.0 on CRAN 2023-03-12 14:07:45 +01:00
80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
9179e98e12 patient ID in first isolate 2023-03-11 17:13:19 +01:00
7ad8635994 documentation for 'data.table' AB selectors 2023-03-11 16:54:02 +01:00
45e840c02f update NEWS 2023-03-11 14:43:31 +01:00
262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
4416394e10 website update 2023-02-26 21:26:58 +01:00
1d3d7d40bc get episode unit tests 2023-02-24 19:54:56 +01:00
2c5a9bb622 new relative episode determination in get_episode(), fix for plotting disk/MIC values 2023-02-24 17:06:30 +01:00
92029c9e95 remove note 2023-02-24 10:31:36 +01:00
049baf0a71 fix for antibiograms on R < 3.5 2023-02-24 09:43:10 +01:00
e70f2cd32c knitr format 2023-02-23 16:27:40 +01:00
a84101db08 N for only 1 AB in 2023-02-22 16:26:13 +01:00
551aaf6517 auto-remove missing ABs in antibiogram() 2023-02-22 16:00:52 +01:00
c2cfc5ef84 fix for antibiogram(), transform WHONET data set to sir 2023-02-22 15:40:05 +01:00