6b0f4ffbd4
new kingdom
2018-11-09 13:11:54 +01:00
d15bb2ab3f
read_4D
2018-11-05 15:30:49 +01:00
d07e9b904e
new function get_locale
2018-11-05 13:20:32 +01:00
d0bc05e5b1
speed improvement is.rsi.eligible
2018-11-02 14:55:29 +01:00
40a159e78d
more unit tests
2018-11-02 10:27:57 +01:00
5476fecc73
eucast update
2018-11-01 20:23:33 +01:00
d3f5236690
simplify gitlab ci
2018-10-31 13:42:35 +01:00
9cd4ab928a
speed improvement as.mo, freq title
2018-10-31 12:10:49 +01:00
160e025609
try to fix gitlab pipelines
2018-10-23 19:49:31 +02:00
87757748bd
switch to gitlab
2018-10-23 16:49:40 +02:00
299c5bea43
na freq, removed factors
2018-10-23 09:42:26 +02:00
c2a93b46db
breaks param, tidyr dep change, freq markdown
2018-10-22 12:32:59 +02:00
5727800b9a
readme fix
2018-10-18 21:43:12 +02:00
0ef91be3ac
param rules for EUCAST
2018-10-18 12:10:10 +02:00
693f64bdbf
new EUCAST rules: clinical breakpoints
2018-10-17 17:32:34 +02:00
95c9fdc552
CRAN fixes for release 0.4.0
...
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
c7c57f4042
0.4.0, just published on CRAN
2018-10-01 19:36:42 +02:00
6d761436f7
benchmarks on readme and speed improvement for direct mo codes
2018-10-01 16:26:02 +02:00
3119a221e5
authors from ITIS, diff for freq
2018-10-01 11:39:43 +02:00
92c9cc2608
diff for freq, fix for mo_shortname
2018-09-29 21:54:32 +02:00
a6aa9e95fb
completed old taxonomic names
2018-09-28 20:13:13 +02:00
768fe17324
removed clipboard functions as it violated CRAN policies
2018-09-28 16:05:18 +02:00
450992baea
new: 1680 old taxonomic names
2018-09-25 16:44:40 +02:00
9c566585b0
first inclusion of ITIS data
2018-09-24 23:33:29 +02:00
5d80cef338
added taxonomic data from ITIS
2018-09-17 20:53:32 +02:00
db14781593
add labels_rsi_count
2018-09-16 22:11:17 +02:00
b792a2754e
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
2018-09-16 16:43:29 +02:00
cb0d74a4f0
support for French and Italian, added quote to freq
2018-09-10 15:45:25 +02:00
b83e6a9380
algoritm improvement, removed all Catabacter except for C. hongkongensis
2018-09-10 11:40:54 +02:00
26f5be0033
support for portuguese, language determination based on system
2018-09-08 16:06:47 +02:00
790bd1622d
added vanA to vanE positive Enterococci
2018-09-05 09:49:19 +02:00
b388e3fee7
Support for German and Spanish microorganism properties, cleanup
2018-09-04 11:33:30 +02:00
75fe4d401f
new MOs, cleanup
2018-09-01 21:19:46 +02:00
5965d3c794
replaced bactid by mo
2018-08-31 13:36:19 +02:00
d9e68e0a50
ggplot_rsi example update, more unit tests
2018-08-29 16:25:57 +02:00
029157b3be
163 new trade names, added ab_tradenames
2018-08-29 12:27:37 +02:00
972fc4f6c7
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
2018-08-28 13:51:13 +02:00
2acdb1981c
atc and bactid functions, readme update
2018-08-25 22:01:14 +02:00
febd0ca885
geom_rsi - any parameter
2018-08-23 21:27:15 +02:00
3e87c8f409
count_* functions
2018-08-22 00:02:26 +02:00
8bad33858e
readme typo
2018-08-15 11:12:38 +02:00
1699d7b8b3
better example of grouping variable in ggplot_rsi
2018-08-14 12:07:03 +02:00
533342583a
Travis checks
2018-08-14 11:37:40 +02:00
7584c929a5
new AppVeyor environment
2018-08-14 08:57:17 +02:00
e5193c7749
AppVeyor
2018-08-13 23:05:53 +02:00
59ce1eb1b1
ggplot_rsi improvements
2018-08-13 16:42:37 +02:00
ce2cdb9309
support groups for portion_df, update README
2018-08-12 22:34:03 +02:00
e5d32cafe0
new unit tests for ggplot, small fixes
2018-08-12 17:44:06 +02:00
1ba7d883fe
new ggplot enhancement
2018-08-11 21:30:00 +02:00
53fa198e35
new portion functions
2018-08-10 15:01:05 +02:00
ae2433a020
rsi family for resistance analysis
2018-08-03 14:49:29 +02:00
bd9bcfef78
thesis advisors
2018-08-03 09:59:39 +02:00
6262315527
Becker classification
...
Lancefield classification
Added Lancefield groups to `microorganisms` data set
2018-08-02 13:15:45 +02:00
7c667eb732
emph guess_bactid
2018-08-01 08:03:31 +02:00
826694323b
new functions R, RI, SI, S
2018-07-29 22:14:51 +02:00
d9e204031d
update to septic_patients, speed improvements
2018-07-25 14:17:04 +02:00
8421638b60
new class bactid
2018-07-23 14:14:03 +02:00
6eaf33baf3
speed improvements
2018-07-15 22:56:41 +02:00
b6655f6454
Welcome C++!
2018-07-13 17:23:46 +02:00
fc30d3fb13
freq: support for table
2018-07-09 14:02:58 +02:00
14b990d769
kurtosis, skewness, start with ML
2018-07-08 22:14:55 +02:00
34ee0247ac
addins and small improvements to microorganisms dataset
2018-07-04 17:20:03 +02:00
MS Berends
dab085d7ad
Update README.md
2018-06-27 10:44:24 +02:00
uscloud
dcc26dd942
Update freq function
2018-05-22 16:34:22 +02:00
f05e7178cb
added vignette of freq
2018-05-09 11:44:46 +02:00
c0fc82c794
Added function n_rsi
2018-05-02 14:56:25 +02:00
6eaf594cb7
update data info
2018-05-01 09:57:50 +02:00
be5d714639
update README
2018-05-01 09:43:47 +02:00
970e3ed7f1
EUCAST rules for MDRO
2018-04-25 15:33:58 +02:00
0b22ddef8e
more unit tests
2018-04-20 13:45:34 +02:00
4b5530ed64
Try to support older R versions
2018-04-18 15:19:00 +02:00
2509e2413d
MDRO, freq tables, new print format for tibbles
2018-04-18 12:24:54 +02:00
07bdd61241
update dependencies
2018-04-02 16:05:09 +02:00
e1e19af625
README update
2018-03-22 13:45:04 +01:00
c765f424ab
typo
2018-03-19 21:03:23 +01:00
dd2517ecb7
- Added new algorithm to determine weighted isolates, can now be points or keyantibiotics, see ?first_isolate`
...
- Function `first_isolate` supports tidyverse-like evaluation of parameters (no need to quote them anymore)
- Functions `as.rsi` and `as.mic` now add the package name and version as attribute
2018-03-19 20:39:23 +01:00
502a44eb25
- Added new function guess_bactid to determine the ID of a microorganism based on genus/species
...
- Renamed `ablist` to `antibiotics`
- Added support for character vector in join functions
- Altered `%like%` to make it case insensitive
2018-03-19 12:43:22 +01:00
53959d40c7
typo in examples
2018-03-13 14:40:52 +01:00
04fc3573ec
add barplots
2018-03-13 14:34:10 +01:00
e4b371d30a
add MIC values
...
add badges to readme
2018-03-13 11:57:30 +01:00
6fa05fe33b
first isolates
2018-02-26 14:06:31 +01:00
10380bcfae
add NEWS
2018-02-22 21:37:10 +01:00
d8da8daf9a
First CRAN submission edits
2018-02-22 20:48:48 +01:00
77194527b5
readme
2018-02-21 12:21:34 +01:00
MS Berends
942c41ae9c
Update README.md
2018-02-21 12:19:42 +01:00
MS Berends
3cccf9df3f
Update README.md
2018-02-21 12:15:04 +01:00
MS Berends
57d0314780
Update README.md
2018-02-21 12:14:17 +01:00
MS Berends
86c9f2913d
Update README.md
2018-02-21 12:11:07 +01:00
ab0503f8b8
abname, logo
2018-02-21 12:10:00 +01:00
62304dc23f
first commit
2018-02-21 11:52:31 +01:00
