1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-25 19:26:13 +01:00
Commit Graph

212 Commits

Author SHA1 Message Date
aa2c0639d0 add confidence intervals (fixed #70), remove combine_IR 2022-10-20 16:08:01 +02:00
82e3198315 add add_custom_antimicrobials() 2022-10-10 20:20:39 +02:00
43c638d122 add mo_current() 2022-10-10 10:12:08 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
63fe160322 new rsi_interpretation_history 2022-09-01 15:20:57 +02:00
3fca703fbf new AMR distance function 2022-08-30 21:48:02 +02:00
3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
152db9d1b5 (v1.8.1.9002) fix for table() on MICs 2022-05-09 17:08:40 +02:00
578e7dfee9 (v1.7.1.9070) Better WHONET support 2021-12-13 10:18:28 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
694cf5ba77 (v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup 2021-11-28 23:01:26 +01:00
2ab21b7af3 (v1.7.1.9026) updated DDDs 2021-08-19 23:43:02 +02:00
1b62bab007 (v1.7.1.9025) unit tests 2021-08-18 23:19:38 +02:00
a2d249962f (v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47 2021-08-16 21:54:34 +02:00
625a6fb304 (v1.7.1.9015) removed S3 taxonomic_name again 2021-07-07 20:34:05 +02:00
ad10693a1a (v1.7.1.9014) rep() for S3 classes 2021-07-06 16:35:14 +02:00
3bd50710e8 (v1.7.1.9010) fix for count_* and proportion_* 2021-07-04 12:00:41 +02:00
1908e7cc7a (v1.7.1.9000) ab_class update, unit tests 2021-06-04 21:07:55 +02:00
2413efd5c1 (v1.6.0.9048) ab selectors overhaul 2021-05-19 22:55:42 +02:00
cfb7df823e (v1.6.0.9044) betalactams() selector 2021-05-18 00:53:04 +02:00
12a8d59869 (v1.6.0.9015) italicise_taxonomy 2021-05-03 10:47:32 +02:00
93683a4ae2 (v1.6.0.9010) big first_isolate() update 2021-04-26 23:57:37 +02:00
70b803dbb6 (v1.6.0.9008) unlike, bugfix for col_mo naming 2021-04-23 09:59:36 +02:00
7a3139f7cc (v1.6.0.9000) custom EUCAST rules 2021-04-07 08:37:42 +02:00
8d6ceb6a15 (v1.5.0.9040) removal of isolate_identifier 2021-03-08 09:44:17 +01:00
450bbe5fb7 (v1.5.0.9034) unit test fix 2021-03-07 21:16:45 +01:00
850c123de7 (v1.5.0.9032) All group generics for MICs 2021-03-07 13:52:39 +01:00
91dd755cac (v1.5.0.9031) math processing of MICs 2021-03-05 15:36:39 +01:00
1737d56ae4 (v1.5.0.9026) vignette update, support for GISA 2021-02-25 12:31:12 +01:00
a673407904 (v1.5.0.9025) big plot and ggplot generics update 2021-02-25 10:33:08 +01:00
31ceba5441 (v1.5.0.9024) more speed improvements 2021-02-22 20:21:33 +01:00
4a84894f79 (v1.5.0.9016) only_rsi_columns update, documentation 2021-02-08 14:18:42 +01:00
20d638c193 (v1.5.0.9013) updated tibble printing colours 2021-01-28 16:09:30 +01:00
1ba44776a1 (v1.5.0.9008) Internal data sets to pkg, speed for auto col determination 2021-01-22 10:20:41 +01:00
e699de955c (v1.5.0.9004) custom MDRO guideline 2021-01-17 00:26:48 +01:00
d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
acbd0cf7ca (v1.4.0.9046) get_episode 2020-12-27 00:07:00 +01:00
c8bcecf232 (v1.4.0.9037) random_* functions 2020-12-12 23:17:29 +01:00
b045b571a6 (v1.4.0.9025) is_new_episode() 2020-11-23 21:50:27 +01:00
363218da7e (v1.4.0.9024) is_new_episode() 2020-11-17 16:57:41 +01:00
05fb213a7c (v1.4.0.9020) mo_is_intrinsic_resistant 2020-11-16 11:03:24 +01:00
760d69a3e0 (v1.4.0.9008) like variations 2020-10-26 12:23:03 +01:00
4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
74a172ef55 (v1.3.0.9010) S3 extensions without dependencies 2020-08-28 21:55:47 +02:00
9b8db57c65 (v1.3.0.9008) also tibble printing for ab 2020-08-26 15:34:12 +02:00
5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00