|
|
8dc94a9eda
|
documentation fix
|
2022-11-05 09:31:19 +01:00 |
|
|
|
3b652983b7
|
documentation fix
|
2022-11-05 08:18:06 +01:00 |
|
|
|
d20caae54b
|
cleanup
|
2022-10-31 13:25:41 +01:00 |
|
|
|
796b972f8a
|
extend vctrs support
|
2022-10-31 11:19:06 +01:00 |
|
|
|
9444ed6d1d
|
fix antibiotics error
|
2022-10-30 21:05:46 +01:00 |
|
|
|
d40e0ef20b
|
completely updated antibiotics
|
2022-10-30 14:31:45 +01:00 |
|
|
|
3d9faf89cf
|
ATC and DDD update
|
2022-10-29 19:01:23 +02:00 |
|
|
|
afdc48db1e
|
fix txt export of microorganisms
|
2022-10-29 16:08:18 +02:00 |
|
|
|
6ad7857d39
|
fix missing R breakpoints
|
2022-10-29 14:15:23 +02:00 |
|
|
|
c2801ba7a1
|
new rsi_translation
|
2022-10-22 22:00:15 +02:00 |
|
|
|
d10651eb26
|
cleanup
|
2022-10-22 10:20:09 +02:00 |
|
|
|
d0b54f640c
|
Update contributors list
|
2022-10-21 21:56:54 +02:00 |
|
|
|
faca6d608a
|
mean AMR distance
|
2022-10-21 16:02:14 +02:00 |
|
|
|
178ab5e5ff
|
mean AMR distance
|
2022-10-21 15:59:31 +02:00 |
|
|
|
4bebba3610
|
fix for scoped dplyr verbs
|
2022-10-21 15:13:19 +02:00 |
|
|
|
aa2c0639d0
|
add confidence intervals (fixed #70), remove combine_IR
|
2022-10-20 16:08:01 +02:00 |
|
|
|
85e2fbe4a3
|
remove warnings from unit tests
|
2022-10-19 11:47:57 +02:00 |
|
|
|
f203928f7e
|
coercion fixes
|
2022-10-19 06:59:36 +02:00 |
|
|
|
3fc39198d0
|
unit test fix
|
2022-10-18 23:03:16 +02:00 |
|
|
|
e5e6d2200d
|
fix add manual ab
|
2022-10-18 22:53:38 +02:00 |
|
|
|
ad68b50ecd
|
custom ab fix
|
2022-10-15 15:20:13 +02:00 |
|
Dr. Matthijs Berends
|
85ed7ea5f0
|
more robust install check
|
2022-10-14 15:45:20 +02:00 |
|
|
|
76bcd3528c
|
move object assignment to AMR_env
|
2022-10-14 13:02:50 +02:00 |
|
|
|
dfae4c7e7d
|
fast-forward from pull
Merge branch 'main' of https://github.com/msberends/AMR into main
# Conflicts:
# DESCRIPTION
# R/add_custom_antimicrobials.R
|
2022-10-11 10:53:51 +02:00 |
|
|
|
33227a5d90
|
support ab selectors for manual AB codes
|
2022-10-11 10:49:55 +02:00 |
|
|
|
57d66cd9d0
|
doc fix
|
2022-10-10 21:38:39 +02:00 |
|
|
|
955f9d7020
|
documentation fix
|
2022-10-10 21:03:39 +02:00 |
|
|
|
82e3198315
|
add add_custom_antimicrobials()
|
2022-10-10 20:20:39 +02:00 |
|
|
|
4fe90092c7
|
fix for NA in as.ab()
|
2022-10-10 15:44:59 +02:00 |
|
|
|
43c638d122
|
add mo_current()
|
2022-10-10 10:12:08 +02:00 |
|
|
|
b753b84128
|
fix for mo type translation
|
2022-10-06 12:11:51 +02:00 |
|
|
|
b9342d103e
|
fix documentation
|
2022-10-06 11:33:30 +02:00 |
|
Dr. Matthijs Berends
|
cd2acc4a29
|
New mo algorithm, prepare for 2.0
|
2022-10-05 09:12:22 +02:00 |
|
|
|
63fe160322
|
new rsi_interpretation_history
|
2022-09-01 15:20:57 +02:00 |
|
|
|
3fca703fbf
|
new AMR distance function
|
2022-08-30 21:48:02 +02:00 |
|
|
|
fbd5d32541
|
small fixes
|
2022-08-29 09:35:36 +02:00 |
|
|
|
e7af5fc716
|
fix AMR vignette
|
2022-08-28 22:38:08 +02:00 |
|
|
|
2ed5f13880
|
Fixes #57
|
2022-08-28 21:13:26 +02:00 |
|
|
|
c44ddf272f
|
fix for R <= 3.3
|
2022-08-28 19:34:04 +02:00 |
|
|
|
71db246d5c
|
unit test fix
|
2022-08-28 19:17:12 +02:00 |
|
|
|
f781998904
|
amoxicillin interpretation fix
|
2022-08-28 11:17:53 +02:00 |
|
|
|
4d050aef7c
|
styled, unit test fix
|
2022-08-28 10:31:50 +02:00 |
|
|
|
303d61b473
|
new tibble export
|
2022-08-27 20:49:37 +02:00 |
|
|
|
3864ab2fb8
|
Feather and Parquet files
|
2022-08-26 22:25:15 +02:00 |
|
|
|
bdbc112f99
|
website update
|
2022-08-21 17:22:34 +02:00 |
|
|
|
d6676e9443
|
disk documentation fix
|
2022-08-21 16:52:09 +02:00 |
|
|
|
952d16de33
|
new, automated website
|
2022-08-21 16:37:20 +02:00 |
|
|
|
7226b70c3d
|
update languages
|
2022-08-20 20:17:14 +02:00 |
|
|
|
3f2f60ab77
|
language updates
|
2022-08-19 12:33:14 +02:00 |
|
|
|
ab97268f4c
|
(v1.8.1.9014) add Toxoplasma
|
2022-08-12 23:27:15 +02:00 |
|
|
|
7f981e7778
|
(v1.8.1.9013) add Toxoplasma
|
2022-06-10 13:15:23 +02:00 |
|
|
|
b84d647cac
|
(v1.8.1.9012) update prevalence of some genera
|
2022-06-03 13:28:55 +02:00 |
|
|
|
70a07bad39
|
(v1.8.1.9010) random when pkg not loaded
|
2022-05-16 12:52:50 +02:00 |
|
|
|
2c5bc73ed6
|
(v1.8.1.9009) random when pkg not loaded
|
2022-05-16 09:29:46 +02:00 |
|
|
|
6de5375256
|
(v1.8.1.9007) website update
|
2022-05-11 10:10:31 +02:00 |
|
|
|
859224e9d0
|
(v1.8.1.9006) added EUCAST 2022 and CLSI 2022
|
2022-05-10 21:34:30 +02:00 |
|
|
|
680e8e7a41
|
(v1.8.1.9005) as.rsi() fix for EUCAST
|
2022-05-10 17:01:37 +02:00 |
|
|
|
d4e22069bc
|
(v1.8.1.9004) fix for table() on MICs
|
2022-05-09 21:33:27 +02:00 |
|
|
|
1c891cc90c
|
(v1.8.1.9003) set_mo_source() fix
|
2022-05-09 20:36:44 +02:00 |
|
|
|
152db9d1b5
|
(v1.8.1.9002) fix for table() on MICs
|
2022-05-09 17:08:40 +02:00 |
|
|
|
4754848e96
|
(v1.8.1.9001) update unit tests, fixes #53
|
2022-04-08 11:02:45 +02:00 |
|
|
|
ccb09706e4
|
v1.8.1
|
2022-03-24 23:05:04 +01:00 |
|
|
|
7b0f1596bd
|
(v1.8.0.9010) as.mo improvement
|
2022-03-15 17:35:02 +01:00 |
|
|
|
1b0983e382
|
(v1.8.1) prerelease 1.8.1
|
2022-03-14 16:36:10 +01:00 |
|
|
|
08d387b5ce
|
(v1.8.0.9005) as.rsi() fix
|
2022-03-10 19:33:25 +01:00 |
|
|
|
ad82bb4ce0
|
(v1.8.0.9004) MIC printing in tibbles
|
2022-03-03 21:11:02 +01:00 |
|
|
|
3b2b2be5f8
|
(v1.8.0.9002) as.rsi() cleanup, more informative warnings
|
2022-03-02 15:38:55 +01:00 |
|
|
|
18e8525d10
|
(v1.8.0.9001) as.mo improvement, fixes #52
|
2022-02-26 21:58:23 +01:00 |
|
|
|
f5dcf0ad58
|
v1.8.0 as accepted by CRAN
|
2022-01-07 16:27:13 +01:00 |
|
|
|
25cef46c59
|
(v1.8.0) prerelease 1.8.0
|
2021-12-23 18:56:28 +01:00 |
|
|
|
75dac113b6
|
(v1.7.1.9077) skimr support only for newer R versions
|
2021-12-23 13:38:25 +01:00 |
|
|
|
d9274bcd0a
|
(v1.7.1.9075) assignment operator
|
2021-12-14 22:59:27 +01:00 |
|
|
|
76dee66852
|
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
|
2021-12-14 22:39:23 +01:00 |
|
|
|
bd4bb1d72f
|
(v1.7.1.9073) as.rsi() fix for UTIs
|
2021-12-14 21:47:14 +01:00 |
|
|
|
5eef01165e
|
(v1.7.1.9072) as.rsi() fix for UTIs
|
2021-12-14 12:33:29 +01:00 |
|
|
|
0cbf8f48b6
|
(v1.7.1.9071) rsi disk fix
|
2021-12-13 11:57:34 +01:00 |
|
|
|
578e7dfee9
|
(v1.7.1.9070) Better WHONET support
|
2021-12-13 10:18:28 +01:00 |
|
|
|
f90e27c1b0
|
(v1.7.1.9069) CLSI 2021 support
|
2021-12-12 11:36:58 +01:00 |
|
|
|
1e66a3daf3
|
(v1.7.1.9068) new logo, unit tests
|
2021-12-12 11:07:02 +01:00 |
|
|
|
56f1ce328a
|
(v1.7.1.9067) Support for Swedish and Russian
|
2021-12-12 09:42:03 +01:00 |
|
|
|
5b5f70a103
|
(v1.7.1.9066) mdro EUCAST v3.3
|
2021-12-11 15:29:30 +01:00 |
|
|
|
e0a2634f14
|
(v1.7.1.9065) unit tests
|
2021-12-11 15:13:44 +01:00 |
|
|
|
77ba4318ea
|
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
|
2021-12-11 13:41:31 +01:00 |
|
|
|
e18c49ed93
|
(v1.7.1.9063) not_intrinsic_resistant
|
2021-12-09 10:48:25 +01:00 |
|
|
|
1fa3fc6af2
|
(v1.7.1.9061) bugfix set_ab_names
|
2021-12-05 23:21:59 +01:00 |
|
|
|
75965124ef
|
(v1.7.1.9060) bugfix set_ab_names
|
2021-12-05 23:11:10 +01:00 |
|
|
|
b747036deb
|
(v1.7.1.9059) bugfix set_ab_names
|
2021-12-05 22:59:06 +01:00 |
|
|
|
7965468ccd
|
(v1.7.1.9058) vars selection for set_ab_names()
|
2021-12-05 22:06:45 +01:00 |
|
|
|
3abe61fd61
|
(v1.7.1.9057) NAs in get_episode()
|
2021-12-02 13:32:14 +01:00 |
|
|
|
5375f75829
|
(v1.7.1.9056) unit tests
|
2021-11-29 11:55:18 +01:00 |
|
|
|
c8698347cb
|
(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
|
2021-11-29 10:38:38 +01:00 |
|
|
|
694cf5ba77
|
(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
|
2021-11-28 23:01:26 +01:00 |
|
|
|
9a2c431e16
|
(v1.7.1.9053) fortify() methods
|
2021-11-01 13:51:13 +01:00 |
|
|
|
91149d6d35
|
(v1.7.1.9052) eucast-update
|
2021-10-06 16:22:36 +02:00 |
|
|
|
37e6e35ec4
|
(v1.7.1.9051) updated taxonomy, updated git branch name
|
2021-10-06 13:23:57 +02:00 |
|
|
|
8f5e5a3fc2
|
(v1.7.1.9050) fix for as.mo
|
2021-10-05 14:00:35 +02:00 |
|
|
|
2bcf28281d
|
(v1.7.1.9049) unit tests
|
2021-10-05 09:58:08 +02:00 |
|
|
|
93a4734b44
|
(v1.7.1.9040) Support for Danish
|
2021-09-29 12:12:35 +02:00 |
|
|
|
81a1a432bd
|
(v1.7.1.9038) dplyr grouping fix on windows?
|
2021-09-01 16:52:55 +02:00 |
|
|
|
bcab74fb6d
|
(v1.7.1.9037) dplyr grouping fix on windows?
|
2021-08-31 17:06:44 +02:00 |
|
