1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-25 07:26:12 +01:00
Commit Graph

1225 Commits

Author SHA1 Message Date
ac55aa84de add news 2022-12-09 11:15:11 +01:00
510140fc55 Updated mo_gramstain() to reflect current taxonomy, fixes #83 2022-12-09 10:30:25 +01:00
Dr. Matthijs Berends
6017f81e74
Update README.md 2022-11-29 19:38:17 +01:00
ba51c2d92f add column to as.mic() and as.disk() warnings 2022-11-28 19:39:52 +01:00
31fb81c382 revised as.rsi(), fix for mdro() 2022-11-24 20:29:00 +01:00
05d536ebb7 complexes 2022-11-17 15:23:29 +01:00
f6862a139d expert rules 12.0 2022-11-14 15:20:39 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support (#77) 2022-11-13 08:46:10 +01:00
Dr. Matthijs Berends
d2edcf51ad
Update website.yaml 2022-11-12 12:10:33 +01:00
8d1679bab3 website update 2022-11-12 09:44:36 +01:00
af205e2705 update collabs 2022-11-10 22:07:35 +01:00
d2ceebe376 website fix 2022-11-07 18:48:12 +01:00
2d90218305 documentation fix 2022-11-05 12:06:40 +01:00
8dc94a9eda documentation fix 2022-11-05 09:31:19 +01:00
3b652983b7 documentation fix 2022-11-05 08:18:06 +01:00
d20caae54b cleanup 2022-10-31 13:25:41 +01:00
796b972f8a extend vctrs support 2022-10-31 11:19:06 +01:00
9444ed6d1d fix antibiotics error 2022-10-30 21:05:46 +01:00
d40e0ef20b completely updated antibiotics 2022-10-30 14:31:45 +01:00
3d9faf89cf ATC and DDD update 2022-10-29 19:01:23 +02:00
fa620f8ebd fix export of lists in antibiotics and antivirals 2022-10-29 16:17:48 +02:00
afdc48db1e fix txt export of microorganisms 2022-10-29 16:08:18 +02:00
6ad7857d39 fix missing R breakpoints 2022-10-29 14:15:23 +02:00
c2801ba7a1 new rsi_translation 2022-10-22 22:00:15 +02:00
d10651eb26 cleanup 2022-10-22 10:20:09 +02:00
d0b54f640c Update contributors list 2022-10-21 21:56:54 +02:00
bfca21bd3f precommit update 2022-10-21 19:31:46 +02:00
faca6d608a mean AMR distance 2022-10-21 16:02:14 +02:00
178ab5e5ff mean AMR distance 2022-10-21 15:59:31 +02:00
4bebba3610 fix for scoped dplyr verbs 2022-10-21 15:13:19 +02:00
Dr. Matthijs Berends
3102beb241
Update check-release.yaml 2022-10-21 09:59:09 +02:00
Dr. Matthijs Berends
74bcc41558
Move older test versions to Windows 2022-10-20 19:39:25 +02:00
aa2c0639d0 add confidence intervals (fixed #70), remove combine_IR 2022-10-20 16:08:01 +02:00
85e2fbe4a3 remove warnings from unit tests 2022-10-19 11:47:57 +02:00
Dr. Matthijs Berends
fed3b6440f
Unit test fix 2022-10-19 08:14:38 +02:00
f203928f7e coercion fixes 2022-10-19 06:59:36 +02:00
3fc39198d0 unit test fix 2022-10-18 23:03:16 +02:00
e5e6d2200d fix add manual ab 2022-10-18 22:53:38 +02:00
ad68b50ecd custom ab fix 2022-10-15 15:20:13 +02:00
Dr. Matthijs Berends
85ed7ea5f0
more robust install check 2022-10-14 15:45:20 +02:00
76bcd3528c move object assignment to AMR_env 2022-10-14 13:02:50 +02:00
dfae4c7e7d fast-forward from pull
Merge branch 'main' of https://github.com/msberends/AMR into main

# Conflicts:
#	DESCRIPTION
#	R/add_custom_antimicrobials.R
2022-10-11 10:53:51 +02:00
33227a5d90 support ab selectors for manual AB codes 2022-10-11 10:49:55 +02:00
57d66cd9d0 doc fix 2022-10-10 21:38:39 +02:00
955f9d7020 documentation fix 2022-10-10 21:03:39 +02:00
3deeedc4b6 website fix 2022-10-10 20:21:41 +02:00
82e3198315 add add_custom_antimicrobials() 2022-10-10 20:20:39 +02:00
4fe90092c7 fix for NA in as.ab() 2022-10-10 15:44:59 +02:00
43c638d122 add mo_current() 2022-10-10 10:12:08 +02:00