Commit Graph

985 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends c3ce1b551d rename `limit_mic_range()` to `rescale_mic()` 2024-05-24 15:07:41 +02:00
dr. M.S. (Matthijs) Berends d214f74e25 allow column name for `ab` in `as.sir()` 2024-05-20 21:29:13 +02:00
dr. M.S. (Matthijs) Berends fc269e667d unit test fix 2024-05-20 18:58:35 +02:00
dr. M.S. (Matthijs) Berends 08a27922a8 new SDD and N for `as.sir()` 2024-05-20 15:27:04 +02:00
dr. M.S. (Matthijs) Berends b68f47d985 improved algorithm of `as.ab()` 2024-05-12 16:24:44 +02:00
dr. M.S. (Matthijs) Berends 1bce7ed3d3 fix git hooks 2024-04-24 11:58:16 +02:00
dr. M.S. (Matthijs) Berends 7f18e66c4e unit test fix 2024-04-24 11:42:43 +02:00
dr. M.S. (Matthijs) Berends 3e5c7d45c6 update intro logo 2024-04-24 09:58:24 +02:00
dr. M.S. (Matthijs) Berends 25089e811e correct for high-level abx 2024-04-24 09:50:32 +02:00
dr. M.S. (Matthijs) Berends 0d8a91db49 rename pre-commit hook to pre-commit checks (no-check) 2024-04-23 10:55:48 +02:00
dr. M.S. (Matthijs) Berends 35f095cceb fixes #148 2024-04-23 09:34:05 +02:00
dr. M.S. (Matthijs) Berends 2899b3c840 new `mo_group_members()` 2024-04-19 10:18:21 +02:00
dr. M.S. (Matthijs) Berends 94e9a4d99b update MIC implementation 2024-04-07 20:22:59 +02:00
dr. M.S. (Matthijs) Berends 0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
dr. M.S. (Matthijs) Berends bc4f8515e2 new Norwegian link 2024-03-03 23:24:57 +01:00
dr. M.S. (Matthijs) Berends f2d245b0cb update navbar colours 2024-03-03 19:07:09 +01:00
dr. M.S. (Matthijs) Berends b303662ec6 fix veterinary for R<4 2024-02-24 19:26:35 +01:00
dr. M.S. (Matthijs) Berends 35963ca3dc vctrs fix 2024-02-24 18:51:37 +01:00
dr. M.S. (Matthijs) Berends 4aa5413641 fix unit test 2024-02-24 18:14:50 +01:00
dr. M.S. (Matthijs) Berends 7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
Emil Rossing 74ea6c8c60
Added support for 'html' in italicize_taxonomy() (#134) 2024-02-13 13:47:07 +01:00
dr. M.S. (Matthijs) Berends 83e92fd88c docu fix 2023-12-04 08:19:02 +01:00
dr. M.S. (Matthijs) Berends 7059568581 fix scale functions 2023-12-03 16:51:54 +01:00
dr. M.S. (Matthijs) Berends c7461766ce Remove RSI from package, add extra MIC scale functions 2023-12-03 11:34:48 +01:00
dr. M.S. (Matthijs) Berends 6f417d0ef2 add `scale_x_mic()` 2023-12-03 01:06:00 +01:00
dr. M.S. (Matthijs) Berends 4c11a7bd9c v2.1.1 2023-10-22 15:51:27 +02:00
dr. M.S. (Matthijs) Berends ca72a646d0 scientific notation for MICs 2023-10-20 15:45:00 +02:00
dr. M.S. (Matthijs) Berends 7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
dr. M.S. (Matthijs) Berends 7dc96794be fix rounding MICs on R-devel 2023-07-20 08:24:27 +02:00
dr. M.S. (Matthijs) Berends 7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex 2023-07-14 10:49:06 +02:00
dr. M.S. (Matthijs) Berends fd480d1a9a console hyperlink fix 2023-07-14 09:50:13 +02:00
dr. M.S. (Matthijs) Berends eff164ecb1 indicate unique identifiers 2023-07-12 21:26:32 +02:00
dr. M.S. (Matthijs) Berends ea2a4652e9 mouse-hover fixes 2023-07-12 15:27:43 +01:00
dr. M.S. (Matthijs) Berends e1b4f99f4f breakpoints fixes 2023-07-12 15:20:04 +01:00
dr. M.S. (Matthijs) Berends 0c46f61260 MO group fixes 2023-07-12 15:04:48 +01:00
dr. M.S. (Matthijs) Berends 7cd9ca274c add strep groups to ABCG 2023-07-12 11:41:25 +01:00
dr. M.S. (Matthijs) Berends 66eeeb4b88 cleanup 2023-07-11 14:29:40 +02:00
dr. M.S. (Matthijs) Berends 8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
dr. M.S. (Matthijs) Berends dab20c09f6 unit test 2023-07-10 18:30:26 +02:00
dr. M.S. (Matthijs) Berends 1b499bf012 fixes 2023-07-10 17:02:28 +02:00
dr. M.S. (Matthijs) Berends a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate 2023-07-10 16:43:46 +02:00
dr. M.S. (Matthijs) Berends 70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
dr. M.S. (Matthijs) Berends 3829311dd3 random() fix 2023-07-08 21:00:49 +02:00
dr. M.S. (Matthijs) Berends acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
dr. M.S. (Matthijs) Berends 2d97cca6d9 fix `reference_df` endless loop 2023-06-26 13:52:02 +02:00
dr. M.S. (Matthijs) Berends 1d9ee39cc7 fix for mo codes 2023-06-22 15:24:18 +02:00
Dr. Matthijs Berends f065945d7b
Update clinical breakpoints and fix some `as.mo()` bugs (#117)
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
2023-06-22 15:10:59 +02:00
dr. M.S. (Matthijs) Berends 9591688811 documentation update 2023-05-27 10:39:22 +02:00
dr. M.S. (Matthijs) Berends e1966503ee unit testing R4.3 2023-05-26 20:37:00 +02:00
dr. M.S. (Matthijs) Berends 766db4e21f as.mo fix 2023-05-26 19:20:21 +02:00