Commit Graph

258 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 461eec9bac cfta streptococci, codecov.yml 2019-04-09 14:59:17 +02:00
dr. M.S. (Matthijs) Berends cffb7787d8 cfta streptococci 2019-04-09 10:34:40 +02:00
dr. M.S. (Matthijs) Berends 30b559827c documentation update 2019-04-07 22:40:02 +02:00
dr. M.S. (Matthijs) Berends 51fdc5d6cc self-learning off 2019-04-06 09:38:23 +02:00
dr. M.S. (Matthijs) Berends fbc9191b13 new EUCAST rules algorithm 2019-04-05 18:47:39 +02:00
dr. M.S. (Matthijs) Berends b25f2d6213 v0.6.1 2019-03-28 21:33:28 +01:00
dr. M.S. (Matthijs) Berends 8a1d384d9c ci fixes 2019-03-26 15:34:04 +01:00
dr. M.S. (Matthijs) Berends 29f444543d added Becker 2019 2019-03-26 14:24:03 +01:00
dr. M.S. (Matthijs) Berends c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
dr. M.S. (Matthijs) Berends e18a1f1f17 as.mo improvement 2019-03-15 17:36:42 +01:00
dr. M.S. (Matthijs) Berends fdffc2791b memory for as.mo() 2019-03-15 13:57:25 +01:00
dr. M.S. (Matthijs) Berends 504a042fba uncertainty levels, new WHONET codes 2019-03-12 12:19:27 +01:00
dr. M.S. (Matthijs) Berends b319b89750 WHONET fix 2019-03-09 08:21:00 +01:00
dr. M.S. (Matthijs) Berends 0c0c6e289b small as.mo fix 2019-03-06 14:39:02 +01:00
dr. M.S. (Matthijs) Berends 5c7a061a5d filter_ab_class fix 2019-03-06 09:32:48 +01:00
dr. M.S. (Matthijs) Berends 74e0ae21fd con WHONET, filter ab class 2019-03-05 22:47:42 +01:00
dr. M.S. (Matthijs) Berends e835525cf6 unknown codes, rsi fix 2019-03-02 22:47:04 +01:00
dr. M.S. (Matthijs) Berends c5efb272fd mo_source improvement 2019-03-01 09:34:04 +01:00
dr. M.S. (Matthijs) Berends 2565b60024 rlang dependency, new fungi 2019-02-28 13:56:28 +01:00
dr. M.S. (Matthijs) Berends 54162522bd age_groups fix 2019-02-27 11:36:12 +01:00
dr. M.S. (Matthijs) Berends f9ded23023 as.mo improvement 2019-02-26 12:33:26 +01:00
dr. M.S. (Matthijs) Berends c506d2893b as.mo improvements 2019-02-25 15:52:32 +01:00
dr. M.S. (Matthijs) Berends 0ec76cfa98 as.mo improvement 2019-02-25 10:42:57 +01:00
dr. M.S. (Matthijs) Berends 1a6314769b as.mo improvement 2019-02-23 16:02:31 +01:00
dr. M.S. (Matthijs) Berends 41ad7a22c8 mo_rank mo_url, added Tremellales 2019-02-22 22:12:10 +01:00
dr. M.S. (Matthijs) Berends 68a9a35ed6 algorithm update 2019-02-21 18:55:52 +01:00
dr. M.S. (Matthijs) Berends c6e57ca456 website update 2019-02-20 14:18:11 +01:00
dr. M.S. (Matthijs) Berends 13120f465f website update 2019-02-20 13:57:23 +01:00
dr. M.S. (Matthijs) Berends 8dc027309e website update 2019-02-20 10:38:24 +01:00
dr. M.S. (Matthijs) Berends fb1fc3686c Catalogue of life 2019-02-20 00:04:48 +01:00
dr. M.S. (Matthijs) Berends 54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
dr. M.S. (Matthijs) Berends efb2af9e3a benchmarks plots 2019-02-14 10:23:51 +01:00
dr. M.S. (Matthijs) Berends 76ed26d27e resistance predict update 2019-02-11 10:27:10 +01:00
dr. M.S. (Matthijs) Berends c56b179857 as.rsi warning, site update 2019-02-09 22:16:24 +01:00
dr. M.S. (Matthijs) Berends ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
dr. M.S. (Matthijs) Berends 3d3366faf7 is.rsi.eligible update 2019-02-04 18:04:29 +01:00
dr. M.S. (Matthijs) Berends 587e00b7be is.rsi.eligible update 2019-02-04 12:24:07 +01:00
dr. M.S. (Matthijs) Berends 0b3dc0231f freq fix 2019-01-30 16:00:55 +01:00
dr. M.S. (Matthijs) Berends 3efb54d016 freq update 2019-01-29 20:20:09 +01:00
dr. M.S. (Matthijs) Berends 6aae206320 WHONET/EARS-Net support 2019-01-29 00:06:50 +01:00
dr. M.S. (Matthijs) Berends f6336fdd89 quasiquotation for freq() 2019-01-28 11:20:32 +01:00
dr. M.S. (Matthijs) Berends e76961a66b less deps 2019-01-27 19:30:40 +01:00
dr. M.S. (Matthijs) Berends a2d3ea280a text updates 2019-01-27 13:55:23 +01:00
dr. M.S. (Matthijs) Berends 18b75356a9 re-add atc_ddd and atc_groups 2019-01-27 13:33:43 +01:00
dr. M.S. (Matthijs) Berends 6ec940bc75 atc_ functions 2019-01-27 10:53:59 +01:00
dr. M.S. (Matthijs) Berends b39055c018 deprecated fix 2019-01-27 00:33:58 +01:00
dr. M.S. (Matthijs) Berends f836722269 atc_ functions 2019-01-26 23:22:56 +01:00
dr. M.S. (Matthijs) Berends f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
dr. M.S. (Matthijs) Berends 46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00
dr. M.S. (Matthijs) Berends 8db87a15e9 fixes 2019-01-15 16:38:54 +01:00
dr. M.S. (Matthijs) Berends 046d195064 resistance predict 2019-01-15 12:45:24 +01:00
dr. M.S. (Matthijs) Berends cda7087722 website update 2019-01-12 19:31:30 +01:00
dr. M.S. (Matthijs) Berends 5aad26035c edited g.test 2019-01-12 11:06:58 +01:00
dr. M.S. (Matthijs) Berends 641d866db2 guess_ab_col, benchmarks 2019-01-11 20:37:23 +01:00
dr. M.S. (Matthijs) Berends 193a2d2863 EUCAST update, as.mo bugfix for empty vlaues 2019-01-08 16:23:45 +01:00
dr. M.S. (Matthijs) Berends bc15f660d6 guess_ab() 2019-01-06 20:23:49 +01:00
dr. M.S. (Matthijs) Berends 2c798547bf language 2019-01-05 21:40:04 +01:00
dr. M.S. (Matthijs) Berends 6652f7d82b fix warnings 2019-01-04 09:49:42 +01:00
dr. M.S. (Matthijs) Berends 80ea555663 guess_ab 2019-01-03 23:56:19 +01:00
dr. M.S. (Matthijs) Berends 6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
dr. M.S. (Matthijs) Berends 68baf058cd website update 2018-12-31 10:35:26 +01:00
dr. M.S. (Matthijs) Berends 92a32b62a7 new website, freq updates 2018-12-29 22:24:19 +01:00
dr. M.S. (Matthijs) Berends 0b8084871d dplyr 0.8.0 support, fixes #7 2018-12-22 22:39:34 +01:00
dr. M.S. (Matthijs) Berends b937662a97 limits for scale_y_percent - Licence update 2018-12-16 22:45:12 +01:00
dr. M.S. (Matthijs) Berends 1ed0cc9bfd age_groups fix 2018-12-16 11:40:54 +01:00
dr. M.S. (Matthijs) Berends 2018d5b477 age and age_groups 2018-12-15 22:40:07 +01:00
dr. M.S. (Matthijs) Berends 7e5fe75a17 small text fixes 2018-12-14 07:48:12 +01:00
dr. M.S. (Matthijs) Berends 81af7be36e note about portions 2018-12-14 07:23:25 +01:00
dr. M.S. (Matthijs) Berends 01a6d56334 add kingdom to mo_taxonomy 2018-12-10 21:47:25 +01:00
dr. M.S. (Matthijs) Berends 5ab7eb07bc keyab automatic 2018-12-10 15:14:29 +01:00
dr. M.S. (Matthijs) Berends 9478ab71be freq - decimals 2018-12-10 10:13:40 +01:00
dr. M.S. (Matthijs) Berends 8e8a9cd190 AI improvements 2018-12-07 12:04:55 +01:00
dr. M.S. (Matthijs) Berends 60fe98bbbd better as.mo handling 2018-12-06 14:36:39 +01:00
dr. M.S. (Matthijs) Berends 9ddf6dc530 support A. species for as.mo, cleanup 2018-11-24 20:25:09 +01:00
dr. M.S. (Matthijs) Berends a8132922af unit test read.4d, unselecting freq cols 2018-11-19 13:00:22 +01:00
dr. M.S. (Matthijs) Berends 83c7da85ab unit tests 2018-11-16 22:28:55 +01:00
dr. M.S. (Matthijs) Berends d22b7f00da unit tests 2018-11-16 22:22:42 +01:00
dr. M.S. (Matthijs) Berends 4fcc2b409a MDRO update 2018-11-16 20:50:50 +01:00
dr. M.S. (Matthijs) Berends fab64e6728 read.4D improvements 2018-11-15 12:42:35 +01:00
dr. M.S. (Matthijs) Berends 6b0f4ffbd4 new kingdom 2018-11-09 13:11:54 +01:00
dr. M.S. (Matthijs) Berends 84e08f516a grouping var for freq 2018-11-06 16:41:59 +01:00
dr. M.S. (Matthijs) Berends d15bb2ab3f read_4D 2018-11-05 15:30:49 +01:00
dr. M.S. (Matthijs) Berends d07e9b904e new function get_locale 2018-11-05 13:20:32 +01:00
dr. M.S. (Matthijs) Berends e601fd259a test syntax fix 2018-11-01 20:50:10 +01:00
dr. M.S. (Matthijs) Berends 5476fecc73 eucast update 2018-11-01 20:23:33 +01:00
dr. M.S. (Matthijs) Berends f7687557c9 eucast updates 2018-11-01 17:06:08 +01:00
dr. M.S. (Matthijs) Berends 9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
dr. M.S. (Matthijs) Berends 1bf8dc2983 as.mo speedup: assigned to namespace 2018-10-29 17:26:17 +01:00
dr. M.S. (Matthijs) Berends 707aa20a37 fixes 2018-10-23 14:59:36 +02:00
dr. M.S. (Matthijs) Berends 7997de6a6d mdro and 1st isolate improvements 2018-10-23 11:15:05 +02:00
dr. M.S. (Matthijs) Berends c2a93b46db breaks param, tidyr dep change, freq markdown 2018-10-22 12:32:59 +02:00
dr. M.S. (Matthijs) Berends ec15b82fd6 param header for freq 2018-10-19 21:52:08 +02:00
dr. M.S. (Matthijs) Berends 86b03577a7 fix for as.mo, added also_single_tested 2018-10-19 13:53:31 +02:00
dr. M.S. (Matthijs) Berends b464dd524a new verbose 2018-10-19 00:17:03 +02:00
dr. M.S. (Matthijs) Berends 0ef91be3ac param rules for EUCAST 2018-10-18 12:10:10 +02:00
dr. M.S. (Matthijs) Berends 693f64bdbf new EUCAST rules: clinical breakpoints 2018-10-17 17:32:34 +02:00
dr. M.S. (Matthijs) Berends d5a41de711 parameter combine_IR 2018-10-16 09:59:31 +02:00
dr. M.S. (Matthijs) Berends 5b5b95a47b count_all and some fixes 2018-10-12 16:35:18 +02:00
dr. M.S. (Matthijs) Berends 95c9fdc552 CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
dr. M.S. (Matthijs) Berends ed17db0263 renamed year columns to ref 2018-10-01 14:44:40 +02:00