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d22b7f00da
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unit tests
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2018-11-16 22:22:42 +01:00 |
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4fcc2b409a
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MDRO update
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2018-11-16 20:50:50 +01:00 |
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fab64e6728
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read.4D improvements
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2018-11-15 12:42:35 +01:00 |
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6b0f4ffbd4
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new kingdom
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2018-11-09 13:11:54 +01:00 |
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84e08f516a
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grouping var for freq
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2018-11-06 16:41:59 +01:00 |
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d15bb2ab3f
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read_4D
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2018-11-05 15:30:49 +01:00 |
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d07e9b904e
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new function get_locale
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2018-11-05 13:20:32 +01:00 |
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e601fd259a
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test syntax fix
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2018-11-01 20:50:10 +01:00 |
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5476fecc73
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eucast update
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2018-11-01 20:23:33 +01:00 |
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f7687557c9
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eucast updates
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2018-11-01 17:06:08 +01:00 |
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9cd4ab928a
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speed improvement as.mo, freq title
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2018-10-31 12:10:49 +01:00 |
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1bf8dc2983
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as.mo speedup: assigned to namespace
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2018-10-29 17:26:17 +01:00 |
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707aa20a37
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fixes
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2018-10-23 14:59:36 +02:00 |
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7997de6a6d
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mdro and 1st isolate improvements
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2018-10-23 11:15:05 +02:00 |
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c2a93b46db
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breaks param, tidyr dep change, freq markdown
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2018-10-22 12:32:59 +02:00 |
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ec15b82fd6
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param header for freq
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2018-10-19 21:52:08 +02:00 |
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86b03577a7
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fix for as.mo, added also_single_tested
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2018-10-19 13:53:31 +02:00 |
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b464dd524a
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new verbose
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2018-10-19 00:17:03 +02:00 |
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0ef91be3ac
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param rules for EUCAST
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2018-10-18 12:10:10 +02:00 |
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693f64bdbf
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new EUCAST rules: clinical breakpoints
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2018-10-17 17:32:34 +02:00 |
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d5a41de711
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parameter combine_IR
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2018-10-16 09:59:31 +02:00 |
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5b5b95a47b
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count_all and some fixes
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2018-10-12 16:35:18 +02:00 |
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95c9fdc552
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CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
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2018-10-09 13:53:33 +02:00 |
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ed17db0263
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renamed year columns to ref
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2018-10-01 14:44:40 +02:00 |
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3119a221e5
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authors from ITIS, diff for freq
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2018-10-01 11:39:43 +02:00 |
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92c9cc2608
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diff for freq, fix for mo_shortname
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2018-09-29 21:54:32 +02:00 |
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a6aa9e95fb
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completed old taxonomic names
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2018-09-28 20:13:13 +02:00 |
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768fe17324
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removed clipboard functions as it violated CRAN policies
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2018-09-28 16:05:18 +02:00 |
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2b0080995e
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speed improvement for as.mo, more old taxonomic names
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2018-09-27 23:23:48 +02:00 |
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450992baea
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new: 1680 old taxonomic names
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2018-09-25 16:44:40 +02:00 |
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9c566585b0
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first inclusion of ITIS data
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2018-09-24 23:33:29 +02:00 |
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5d80cef338
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added taxonomic data from ITIS
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2018-09-17 20:53:32 +02:00 |
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db14781593
|
add labels_rsi_count
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2018-09-16 22:11:17 +02:00 |
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b792a2754e
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added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
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2018-09-16 16:43:29 +02:00 |
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d049ec9e69
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ggplot2_rsi fix
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2018-09-13 14:48:34 +02:00 |
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cb0d74a4f0
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support for French and Italian, added quote to freq
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2018-09-10 15:45:25 +02:00 |
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b83e6a9380
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algoritm improvement, removed all Catabacter except for C. hongkongensis
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2018-09-10 11:40:54 +02:00 |
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4816419f0c
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AI improvements for microorganisms
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2018-09-09 12:11:44 +02:00 |
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26f5be0033
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support for portuguese, language determination based on system
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2018-09-08 16:06:47 +02:00 |
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de36b0be23
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fix for empty values in mo_property
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2018-09-05 12:21:27 +02:00 |
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e39a9a8b05
|
added mo_shortname
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2018-09-05 10:51:46 +02:00 |
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790bd1622d
|
added vanA to vanE positive Enterococci
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2018-09-05 09:49:19 +02:00 |
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b388e3fee7
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Support for German and Spanish microorganism properties, cleanup
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2018-09-04 11:33:30 +02:00 |
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75fe4d401f
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new MOs, cleanup
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2018-09-01 21:19:46 +02:00 |
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5965d3c794
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replaced bactid by mo
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2018-08-31 13:36:19 +02:00 |
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98ff131680
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support for older versions of ggplot2
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2018-08-29 16:39:28 +02:00 |
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d654444c8e
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re added nrow
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2018-08-29 16:35:32 +02:00 |
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d9e68e0a50
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ggplot_rsi example update, more unit tests
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2018-08-29 16:25:57 +02:00 |
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029157b3be
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163 new trade names, added ab_tradenames
|
2018-08-29 12:27:37 +02:00 |
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972fc4f6c7
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ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
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2018-08-28 13:51:13 +02:00 |
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