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mirror of https://github.com/msberends/AMR.git synced 2024-12-27 10:06:12 +01:00
Commit Graph

146 Commits

Author SHA1 Message Date
4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
3b84b8be75 v1.5.0 2021-01-06 11:16:17 +01:00
128ebcfd62 (v1.4.0.9043) documentation update 2020-12-22 00:51:17 +01:00
81af41da3a (v1.4.0.9041) updates based on review 2020-12-17 16:22:25 +01:00
2145f1d1ba (v1.4.0.9033) documentation update 2020-12-08 12:37:25 +01:00
05fb213a7c (v1.4.0.9020) mo_is_intrinsic_resistant 2020-11-16 11:03:24 +01:00
d3b1d33210 (v1.4.0.9013) is_gram_negative/positive update 2020-11-09 13:07:02 +01:00
2ef7dfc8a3 (v1.4.0.9003) CoNS update 2020-10-20 21:00:57 +02:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
36ec8b0d81 (v1.3.0.9033) skimr fix 2020-09-28 11:00:59 +02:00
22f6ceb3e4 (v1.3.0.9031) matching score update 2020-09-26 16:51:17 +02:00
050a9a04fb (v1.3.0.9030) matching score update 2020-09-26 16:26:01 +02:00
c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
d049cce69b (v1.3.0.9023) optimalisation 2020-09-19 11:54:01 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
7b6dd676f7 (v1.3.0.9018) language corrections 2020-09-14 12:21:23 +02:00
3ff871afeb (v1.3.0.9016) mo_uncertainties() overhaul 2020-09-12 08:49:01 +02:00
c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00
c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
1b65d76cfb (v1.2.0.9037) survey on website 2020-07-28 18:39:57 +02:00
09fba38ea6 (v1.2.0.9035) as.mo() speed improvement 2020-07-22 10:24:23 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
ac12392da3 (v1.2.0.9008) ab_class improvement 2020-06-17 15:14:37 +02:00
86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
e467cc103e (v1.1.0.9017) as.ab() update, added ab_url() 2020-05-22 20:15:19 +02:00
7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
5e2b294351 (v0.9.0.9026) update documentation 2020-02-17 14:38:01 +01:00
c7a76ba713 (v0.9.0.9020) as.mo() improvement 2020-02-09 22:04:29 +01:00
f152ab9a48 (v0.9.0.9018) Remove mo_history 2020-01-31 23:27:38 +01:00
a13c62e6e8 (v0.9.0.9016) Support SNOMED codes 2020-01-27 19:14:23 +01:00
ced1a7b7fa (v0.9.0.9008) Happy new year! Add lifecycles 2020-01-05 17:22:09 +01:00
c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
09e2730b53 (v0.8.0.9031) as.mo() improvements 2019-11-15 15:25:03 +01:00
64d9829030 (v0.7.1.9081) bug_drug fixes 2019-09-23 13:53:50 +02:00
40e6b3e8f6 (v0.7.1.9077) mo codes fix 2019-09-20 14:18:29 +02:00
e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
398c5bdc4f (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
7108454ba5 (v0.7.1.9055) algorithm improvements 2019-08-13 16:15:08 +02:00
4ff20af123 (v0.7.1.9006) new rsi calculations, atc class removal 2019-07-02 16:48:52 +02:00
156d550895 (v0.7.1.9005) new rsi calculations, atc class removal 2019-07-01 14:03:15 +02:00
c9156c004a (v0.7.0.9013) mo_synonym fix 2019-06-22 14:49:12 +02:00
270aa0dd33 v0.7.0 2019-06-03 17:45:22 +02:00
493ae2ba0c (v0.6.1.9044) first_isolate fix for species 2019-05-31 14:25:11 +02:00
4ca00e1868 speed improvement eucast_rules(), support more old MO codes 2019-05-20 12:00:18 +02:00
68cc7ef0d0 new antibiotics 2019-05-10 16:44:59 +02:00
cffb7787d8 cfta streptococci 2019-04-09 10:34:40 +02:00
30b559827c documentation update 2019-04-07 22:40:02 +02:00
51fdc5d6cc self-learning off 2019-04-06 09:38:23 +02:00
b25f2d6213 v0.6.1 2019-03-28 21:33:28 +01:00
29f444543d added Becker 2019 2019-03-26 14:24:03 +01:00
c6a12266e7 DSMZ data 2019-03-18 14:29:41 +01:00
e18a1f1f17 as.mo improvement 2019-03-15 17:36:42 +01:00
fdffc2791b memory for as.mo() 2019-03-15 13:57:25 +01:00
504a042fba uncertainty levels, new WHONET codes 2019-03-12 12:19:27 +01:00
b319b89750 WHONET fix 2019-03-09 08:21:00 +01:00
0c0c6e289b small as.mo fix 2019-03-06 14:39:02 +01:00
e835525cf6 unknown codes, rsi fix 2019-03-02 22:47:04 +01:00
2565b60024 rlang dependency, new fungi 2019-02-28 13:56:28 +01:00
54162522bd age_groups fix 2019-02-27 11:36:12 +01:00
c506d2893b as.mo improvements 2019-02-25 15:52:32 +01:00
0ec76cfa98 as.mo improvement 2019-02-25 10:42:57 +01:00
1a6314769b as.mo improvement 2019-02-23 16:02:31 +01:00
41ad7a22c8 mo_rank mo_url, added Tremellales 2019-02-22 22:12:10 +01:00
68a9a35ed6 algorithm update 2019-02-21 18:55:52 +01:00
13120f465f website update 2019-02-20 13:57:23 +01:00
8dc027309e website update 2019-02-20 10:38:24 +01:00
fb1fc3686c Catalogue of life 2019-02-20 00:04:48 +01:00
54f8258f8c Catalogue of Life, replaces ITIS 2019-02-18 02:33:37 +01:00
ed30312048 mo codes for WHONET 2019-02-08 16:06:54 +01:00
3efb54d016 freq update 2019-01-29 20:20:09 +01:00
a2d3ea280a text updates 2019-01-27 13:55:23 +01:00
f4ff98b470 WHO update, antibiotics update 2019-01-25 13:18:41 +01:00
46dcc7e2e8 set_mo_source 2019-01-21 15:53:01 +01:00
5aad26035c edited g.test 2019-01-12 11:06:58 +01:00
bc15f660d6 guess_ab() 2019-01-06 20:23:49 +01:00
6b2d464f8c big website update, licence txt update 2019-01-02 23:24:07 +01:00
01a6d56334 add kingdom to mo_taxonomy 2018-12-10 21:47:25 +01:00
8e8a9cd190 AI improvements 2018-12-07 12:04:55 +01:00
9ddf6dc530 support A. species for as.mo, cleanup 2018-11-24 20:25:09 +01:00
6b0f4ffbd4 new kingdom 2018-11-09 13:11:54 +01:00
5476fecc73 eucast update 2018-11-01 20:23:33 +01:00
9cd4ab928a speed improvement as.mo, freq title 2018-10-31 12:10:49 +01:00
1bf8dc2983 as.mo speedup: assigned to namespace 2018-10-29 17:26:17 +01:00
95c9fdc552 CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
3119a221e5 authors from ITIS, diff for freq 2018-10-01 11:39:43 +02:00
2b0080995e speed improvement for as.mo, more old taxonomic names 2018-09-27 23:23:48 +02:00
450992baea new: 1680 old taxonomic names 2018-09-25 16:44:40 +02:00
9c566585b0 first inclusion of ITIS data 2018-09-24 23:33:29 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias 2018-09-16 16:43:29 +02:00
26f5be0033 support for portuguese, language determination based on system 2018-09-08 16:06:47 +02:00
e39a9a8b05 added mo_shortname 2018-09-05 10:51:46 +02:00
b388e3fee7 Support for German and Spanish microorganism properties, cleanup 2018-09-04 11:33:30 +02:00
5965d3c794 replaced bactid by mo 2018-08-31 13:36:19 +02:00