Matthijs Berends
03be4b87fc
(v3.0.1.9079) docs: rename remaining 'antibiotic selectors'/'AB selectors' to 'antimicrobial selectors'/'AMR selectors'
...
* docs: rename remaining 'antibiotic selectors'/'AB selectors' to 'antimicrobial selectors'/'AMR selectors'
Five leftover occurrences of the old terminology updated in the AMR
vignette (section heading + code comment), the amr_selectors test file,
and two roxygen example comments in amr_selectors.R. The auto-generated
man/antimicrobial_selectors.Rd will update on the next devtools::document() run.
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com >
Claude-Session: https://claude.ai/code/session_0169LucQ7SHDLHdTnDs1ENhd
* fix
---------
Co-authored-by: Claude <noreply@anthropic.com >
2026-06-27 14:31:58 +02:00
Matthijs Berends
f7d353361c
improve top_n_microorganisms(): add property_for_each, fix property=NULL, enforce rank order ( #297 )
2026-06-26 21:40:11 +02:00
9898b5df4b
(v3.0.1.9059) Fix WISCA in vignette
2026-06-23 14:38:59 +02:00
0af3f84655
(v3.0.1.9057) website fix
2026-05-02 14:56:26 +02:00
6c24718893
(v3.0.1.9044) fix old R version
2026-04-04 11:51:50 +02:00
2a8a1eda97
(v3.0.1.9039) cli fixes
2026-03-23 10:38:28 +01:00
975a690c10
(v3.0.1.9038) fix format inline
2026-03-22 22:16:59 +01:00
353eaa3f38
(v3.0.1.9033) add ionophores(), clorobiocin, aminocoumarins group
2026-03-09 11:57:36 +01:00
daab605ca4
(v3.0.1.9028) fix unique CIDs
2026-03-06 18:53:42 +01:00
b6211931f8
(v3.0.1.9022) add ceftibuten/avibactam (CTA), kasugamycin (KAS), ostreogrycin (OST), thiostrepton (THS), xeruborbactam (XER), zorbamycin (ZOR)
2026-03-03 15:41:08 +01:00
2df2911cf4
(v3.0.1.9018) fixes #249
...
updates AB groups
2026-01-16 10:57:03 +01:00
cfbbfb4fa5
(v3.0.1.9007) fix #246
2026-01-06 23:08:50 +01:00
ba30b08f76
(v3.0.1.9003) Add taniborbactam and cefepime/taniborbactam
2025-11-24 11:24:02 +01:00
60bd631e1a
(v3.0.0.9019) Fixes #229 , #230 , #227 , #225
2025-09-01 16:56:55 +02:00
8dab0a3730
(v3.0.0.9007) allow any tidyselect language in as.sir()
2025-07-17 14:29:35 +02:00
5667ce3eae
(v2.1.1.9287) fix antibiotics
2025-06-01 12:17:47 +02:00
f7938289eb
(v2.1.1.9186) replace antibiotics with antimicrobials!
2025-03-07 20:43:26 +01:00
8ba2e4ed94
(v2.1.1.9141) new AMR selectors, eucast overwrite arg
2025-02-07 18:01:22 +01:00
08ddbaa930
(v2.1.1.9123) add EFF code to antibiotics data set
2025-01-15 16:14:09 +01:00
94501371cd
(v2.1.1.9094) fix antibiotics
2024-10-10 16:38:20 +02:00
ef79d22daf
(v2.1.1.9093) New brand names
2024-10-06 22:30:52 +02:00
ac1c40d8bb
(v2.1.1.9081) HUGE microorganisms update for fungi!
2024-09-29 22:17:56 +02:00
ddb23b6e73
(v2.1.1.9071) update veterinary SIR interpretation, add only_fungi
2024-09-19 11:44:56 +02:00
9bf7584d58
(v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N
2024-06-14 22:39:01 +02:00
de17de1be9
(v2.1.1.9048) vctrs update for sir
2024-06-13 20:55:17 +02:00
af74e1d4f2
(v2.1.1.9041) antibiotics update
2024-06-08 17:35:25 +02:00
7be4dabbc0
support veterinary MIC/disk translation
2024-02-24 15:16:52 +01:00
7cda9e575b
prepare for CRAN
2023-10-20 14:51:48 +02:00
dad25302f2
make rsi work in more cases, documentation update
2023-02-22 14:38:57 +01:00
9444ed6d1d
fix antibiotics error
2022-10-30 21:05:46 +01:00
d40e0ef20b
completely updated antibiotics
2022-10-30 14:31:45 +01:00
3d9faf89cf
ATC and DDD update
2022-10-29 19:01:23 +02:00
303d61b473
new tibble export
2022-08-27 20:49:37 +02:00
578e7dfee9
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
694cf5ba77
(v1.7.1.9054) mdro() update - fixes #49 , first_isolate() speedup
2021-11-28 23:01:26 +01:00
2ab21b7af3
(v1.7.1.9026) updated DDDs
2021-08-19 23:43:02 +02:00
a2d249962f
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
2021-08-16 21:54:34 +02:00
95050ee3e0
(v1.7.1.9007) Updated antibiotics dataset, fixes #41
2021-06-23 10:03:17 +02:00
5679ccdaf9
(v1.6.0.9017) extra system codes
2021-05-04 12:47:33 +02:00
4e0a9533ad
(v1.5.0.9041) SNOMED update
2021-03-11 21:42:30 +01:00
d014955ce0
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
2021-01-12 22:08:04 +01:00
c19095a3d5
(v1.3.0.9026) eucast expert rules 3.2
2020-09-24 00:30:11 +02:00
4e40e42011
(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
2020-09-18 16:05:53 +02:00
c8edcb7439
(v1.3.0) small fixes
2020-07-30 15:15:52 +02:00
344bbd57f4
(v1.2.0.9014) ab_from_text()
2020-06-25 17:34:50 +02:00
352508889c
(v1.2.0.9005) data set fix
2020-06-09 16:31:44 +02:00
8b692ecfcf
(v1.2.0.9004) rsi_df() fix for groups
2020-06-09 16:18:03 +02:00
86d44054f0
(v1.1.0.9020) updated taxonomy
2020-05-27 16:37:49 +02:00
19703eb5d3
(v1.1.0.9012) lose dependencies
2020-05-19 12:08:49 +02:00
4be54d608c
(v1.0.1.9008) RIVM abbreviations for drugs
2020-04-14 20:38:09 +02:00
