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77ba4318ea
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(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
|
2021-12-11 13:41:31 +01:00 |
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e18c49ed93
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(v1.7.1.9063) not_intrinsic_resistant
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2021-12-09 10:48:25 +01:00 |
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1fa3fc6af2
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(v1.7.1.9061) bugfix set_ab_names
|
2021-12-05 23:21:59 +01:00 |
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75965124ef
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(v1.7.1.9060) bugfix set_ab_names
|
2021-12-05 23:11:10 +01:00 |
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b747036deb
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(v1.7.1.9059) bugfix set_ab_names
|
2021-12-05 22:59:06 +01:00 |
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7965468ccd
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(v1.7.1.9058) vars selection for set_ab_names()
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2021-12-05 22:06:45 +01:00 |
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3abe61fd61
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(v1.7.1.9057) NAs in get_episode()
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2021-12-02 13:32:14 +01:00 |
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5375f75829
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(v1.7.1.9056) unit tests
|
2021-11-29 11:55:18 +01:00 |
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c8698347cb
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(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
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2021-11-29 10:38:38 +01:00 |
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694cf5ba77
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(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
|
2021-11-28 23:01:26 +01:00 |
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9a2c431e16
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(v1.7.1.9053) fortify() methods
|
2021-11-01 13:51:13 +01:00 |
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91149d6d35
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(v1.7.1.9052) eucast-update
|
2021-10-06 16:22:36 +02:00 |
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37e6e35ec4
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(v1.7.1.9051) updated taxonomy, updated git branch name
|
2021-10-06 13:23:57 +02:00 |
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8f5e5a3fc2
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(v1.7.1.9050) fix for as.mo
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2021-10-05 14:00:35 +02:00 |
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2bcf28281d
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(v1.7.1.9049) unit tests
|
2021-10-05 09:58:08 +02:00 |
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93a4734b44
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(v1.7.1.9040) Support for Danish
|
2021-09-29 12:12:35 +02:00 |
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81a1a432bd
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(v1.7.1.9038) dplyr grouping fix on windows?
|
2021-09-01 16:52:55 +02:00 |
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bcab74fb6d
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(v1.7.1.9037) dplyr grouping fix on windows?
|
2021-08-31 17:06:44 +02:00 |
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986bd826ee
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(v1.7.1.9035) dplyr grouping fix on windows?
|
2021-08-30 15:43:12 +02:00 |
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1daa117e9f
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(v1.7.1.9033) dplyr grouping fix on windows?
|
2021-08-30 15:01:32 +02:00 |
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6ca6a3f6df
|
(v1.7.1.9032) dplyr grouping fix on windows?
|
2021-08-30 14:17:27 +02:00 |
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e6ce25162e
|
(v1.7.1.9031) dplyr grouping fix on windows?
|
2021-08-30 14:07:46 +02:00 |
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d6a916d70b
|
(v1.7.1.9030) unit test
|
2021-08-29 23:50:45 +02:00 |
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2ab21b7af3
|
(v1.7.1.9026) updated DDDs
|
2021-08-19 23:43:02 +02:00 |
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1b62bab007
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(v1.7.1.9025) unit tests
|
2021-08-18 23:19:38 +02:00 |
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a44283f998
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(v1.7.1.9024) unit tests
|
2021-08-17 14:34:11 +02:00 |
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a2d249962f
|
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
|
2021-08-16 21:54:34 +02:00 |
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4e1efd902c
|
(v1.7.1.9022) rely on vctrs for ab selectors
|
2021-07-23 21:42:11 +02:00 |
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0ec81cc12e
|
(v1.7.1.9021) autoplot generics
|
2021-07-12 22:12:28 +02:00 |
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6838f03bde
|
(v1.7.1.9020) autoplot generics
|
2021-07-12 20:24:49 +02:00 |
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fc946564d1
|
(v1.7.1.9019) Morganella MIC in EUCAST 2021
|
2021-07-12 12:28:41 +02:00 |
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5ccb330b42
|
(v1.7.1.9018) translation fix
|
2021-07-11 13:20:45 +02:00 |
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39d97ab53b
|
(v1.7.1.9017) ab selector error
|
2021-07-08 23:05:45 +02:00 |
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b228eb1536
|
(v1.7.1.9016) only_treatable ab selectors
|
2021-07-08 22:23:28 +02:00 |
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625a6fb304
|
(v1.7.1.9015) removed S3 taxonomic_name again
|
2021-07-07 20:34:05 +02:00 |
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ad10693a1a
|
(v1.7.1.9014) rep() for S3 classes
|
2021-07-06 16:35:14 +02:00 |
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16b4c74d44
|
(v1.7.1.9013) temp fix for ggplot2 bug #4511
|
2021-07-04 22:10:46 +02:00 |
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5b5741f681
|
(v1.7.1.9011) subsetting taxonomy fix
|
2021-07-04 15:26:50 +02:00 |
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3bd50710e8
|
(v1.7.1.9010) fix for count_* and proportion_*
|
2021-07-04 12:00:41 +02:00 |
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3e26929838
|
(v1.7.1.9009) fix for ab class selectors
|
2021-07-03 21:56:53 +02:00 |
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95050ee3e0
|
(v1.7.1.9007) Updated antibiotics dataset, fixes #41
|
2021-06-23 10:03:17 +02:00 |
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d04e83f494
|
(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
|
2021-06-22 12:16:42 +02:00 |
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c44d9392ca
|
(v1.7.1.9004) more extensive unit tests
|
2021-06-15 10:51:04 +02:00 |
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556bf0014d
|
(v1.7.1.9003) unit test
|
2021-06-14 22:37:05 +02:00 |
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99be4c7e7e
|
(v1.7.1.9002) ab class selectors update
|
2021-06-14 22:04:04 +02:00 |
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683a0e748a
|
(v1.7.1.9001) unit tests
|
2021-06-05 15:12:01 +02:00 |
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1908e7cc7a
|
(v1.7.1.9000) ab_class update, unit tests
|
2021-06-04 21:07:55 +02:00 |
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7e70403efb
|
(v1.7.1) New CRAN release
|
2021-06-03 15:19:21 +02:00 |
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bef0f42f66
|
(v1.7.0.9001) CLSI 2020 guideline
|
2021-06-01 15:33:06 +02:00 |
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f406319503
|
(v1.7.0.9000) package size
|
2021-05-30 22:14:38 +02:00 |
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a33c8a51a2
|
v1.7.0
|
2021-05-26 10:59:54 +02:00 |
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ac73a8d849
|
v1.7.0
|
2021-05-24 15:29:17 +02:00 |
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e5599bc694
|
(v1.6.0.9065) unit tests
|
2021-05-24 11:01:32 +02:00 |
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4fbf9e1720
|
(v1.6.0.9064) prepare new release
|
2021-05-24 09:34:08 +02:00 |
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a13fd98e8b
|
(v1.6.0.9063) prepare new release
|
2021-05-24 09:00:11 +02:00 |
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06302d296a
|
(v1.6.0.9062) code consistency
|
2021-05-24 00:06:28 +02:00 |
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07939b1a14
|
(v1.6.0.9061) age() update
|
2021-05-23 23:11:16 +02:00 |
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b210f1327c
|
(v1.6.0.9055) support codecov again
|
2021-05-21 20:20:51 +02:00 |
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4a2a48b7c1
|
(v1.6.0.9052) unit tests
|
2021-05-20 11:42:39 +02:00 |
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04ef5b28e7
|
(v1.6.0.9050) printing NA in custom_eucast_rules()
|
2021-05-20 10:10:40 +02:00 |
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9a2879cba9
|
(v1.6.0.9049) unit tests
|
2021-05-20 00:07:27 +02:00 |
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2413efd5c1
|
(v1.6.0.9048) ab selectors overhaul
|
2021-05-19 22:55:42 +02:00 |
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6920c0be41
|
(v1.6.0.9047) filter_ab_class() fixes
|
2021-05-18 11:29:31 +02:00 |
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cfb7df823e
|
(v1.6.0.9044) betalactams() selector
|
2021-05-18 00:53:04 +02:00 |
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be49131ed7
|
(v1.6.0.9043) translation update
|
2021-05-17 19:43:01 +02:00 |
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83fec69a03
|
(v1.6.0.9042) translation update
|
2021-05-17 11:26:12 +02:00 |
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916df6e90c
|
(v1.6.0.9041) filter_ab_class() fix
|
2021-05-16 10:50:00 +02:00 |
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aeea00881e
|
(v1.6.0.9023) new unit test flow
|
2021-05-13 19:31:47 +02:00 |
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655b813e99
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(v1.6.0.9022) unit test fix
|
2021-05-13 15:56:12 +02:00 |
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29dbfa2f49
|
(v1.6.0.9021) join functions update
|
2021-05-12 18:15:03 +02:00 |
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3319fbae58
|
(v1.6.0.9020) fix for skimr in dplyr 1.0.6
|
2021-05-06 15:17:11 +02:00 |
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0aca719929
|
(v1.6.0.9018) unit tests
|
2021-05-04 15:20:43 +02:00 |
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5679ccdaf9
|
(v1.6.0.9017) extra system codes
|
2021-05-04 12:47:33 +02:00 |
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f33e61bac7
|
(v1.6.0.9016) website update and c() fixes
|
2021-05-03 13:06:43 +02:00 |
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12a8d59869
|
(v1.6.0.9015) italicise_taxonomy
|
2021-05-03 10:47:32 +02:00 |
|
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|
e405de079c
|
(v1.6.0.9014) as.rsi() for numeric values
|
2021-04-30 13:18:48 +02:00 |
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a9fd4aa49f
|
(v1.6.0.9013) website update
|
2021-04-29 17:16:30 +02:00 |
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5e06b20d43
|
(v1.6.0.9012) unit tests
|
2021-04-27 11:28:17 +02:00 |
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c5fff1c95c
|
(v1.6.0.9011) unit tests
|
2021-04-27 10:27:13 +02:00 |
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93683a4ae2
|
(v1.6.0.9010) big first_isolate() update
|
2021-04-26 23:57:37 +02:00 |
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5f9e7bd3ee
|
(v1.6.0.9009) key_antibiotics update
|
2021-04-23 16:13:26 +02:00 |
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70b803dbb6
|
(v1.6.0.9008) unlike, bugfix for col_mo naming
|
2021-04-23 09:59:36 +02:00 |
|
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|
c6289c3fc3
|
(v1.6.0.9007) documentation custom eucast rules, progress bar as.mo
|
2021-04-20 10:46:17 +02:00 |
|
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|
de66eccf43
|
(v1.6.0.9006) eucast rules fix for Ochrobactrum anthropi
|
2021-04-16 14:59:57 +02:00 |
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|
24ac18a99d
|
(v1.6.0.9005) unit test fix
|
2021-04-16 13:24:59 +02:00 |
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9842ef9660
|
(v1.6.0.9004) unit test fix
|
2021-04-16 12:02:57 +02:00 |
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|
00d3e437a8
|
(v1.6.0.9003) like() fix
|
2021-04-16 11:41:05 +02:00 |
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d277d58475
|
(v1.6.0.9002) R-3.0 installation fix
|
2021-04-12 14:24:40 +02:00 |
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|
6ff5448192
|
(v1.6.0.9001) support Inf for episodes
|
2021-04-12 12:35:13 +02:00 |
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|
7a3139f7cc
|
(v1.6.0.9000) custom EUCAST rules
|
2021-04-07 08:37:42 +02:00 |
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|
551f99dc8f
|
v1.6.0
|
2021-03-15 07:23:21 +01:00 |
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4e0a9533ad
|
(v1.5.0.9041) SNOMED update
|
2021-03-11 21:42:30 +01:00 |
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8d6ceb6a15
|
(v1.5.0.9040) removal of isolate_identifier
|
2021-03-08 09:44:17 +01:00 |
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a7c9b4c295
|
(v1.5.0.9039) handle first isolates for missing antibiograms
|
2021-03-08 02:38:32 +01:00 |
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461793dc34
|
(v1.5.0.9038) quick test
|
2021-03-08 01:24:37 +01:00 |
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a12975bc6e
|
(v1.5.0.9037) quick test
|
2021-03-08 00:13:13 +01:00 |
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68163e3089
|
(v1.5.0.9036) quick test
|
2021-03-07 22:45:05 +01:00 |
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2f0fc3cab7
|
(v1.5.0.9035) quick test
|
2021-03-07 22:15:25 +01:00 |
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450bbe5fb7
|
(v1.5.0.9034) unit test fix
|
2021-03-07 21:16:45 +01:00 |
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1bbf409fe5
|
(v1.5.0.9033) as.rsi fix
|
2021-03-07 16:15:43 +01:00 |
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|
850c123de7
|
(v1.5.0.9032) All group generics for MICs
|
2021-03-07 13:52:39 +01:00 |
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91dd755cac
|
(v1.5.0.9031) math processing of MICs
|
2021-03-05 15:36:39 +01:00 |
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0d29bde693
|
(v1.5.0.9030) as.ab() speed improvement
|
2021-03-05 10:32:09 +01:00 |
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0e0e3c4ffa
|
(v1.5.0.9029) added missing families and orders
|
2021-03-05 01:31:46 +01:00 |
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ddf88345f1
|
(v1.5.0.9028) Updated taxonomy until March 2021
|
2021-03-04 23:28:32 +01:00 |
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41f94cde97
|
(v1.5.0.9027) website update
|
2021-02-26 12:11:29 +01:00 |
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1737d56ae4
|
(v1.5.0.9026) vignette update, support for GISA
|
2021-02-25 12:31:12 +01:00 |
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a673407904
|
(v1.5.0.9025) big plot and ggplot generics update
|
2021-02-25 10:33:08 +01:00 |
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31ceba5441
|
(v1.5.0.9024) more speed improvements
|
2021-02-22 20:21:33 +01:00 |
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0fdabff1ba
|
(v1.5.0.9023) mo properties speed improvement
|
2021-02-21 23:19:40 +01:00 |
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062c49fca1
|
(v1.5.0.9022) mo properties speed improvement
|
2021-02-21 22:56:35 +01:00 |
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5ef8cb41a7
|
(v1.5.0.9021) improve speed of %like%
|
2021-02-21 20:15:09 +01:00 |
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daa12ced2c
|
(v1.5.0.9020) translation fix
|
2021-02-18 23:23:14 +01:00 |
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|
601ea7377c
|
(v1.5.0.9019) use functions without loading AMR pkg
|
2021-02-17 10:58:13 +01:00 |
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2dd0656355
|
(v1.5.0.9018) fix unit tests
|
2021-02-09 12:28:15 +01:00 |
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cb404492b2
|
(v1.5.0.9017) unit testing
|
2021-02-08 21:09:36 +01:00 |
|
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4a84894f79
|
(v1.5.0.9016) only_rsi_columns update, documentation
|
2021-02-08 14:18:42 +01:00 |
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8fda473e49
|
(v1.5.0.9015) unit test fix, grouped first isolates
|
2021-02-04 16:48:16 +01:00 |
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2eca8c3f01
|
(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
|
2021-02-02 23:57:35 +01:00 |
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20d638c193
|
(v1.5.0.9013) updated tibble printing colours
|
2021-01-28 16:09:30 +01:00 |
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331c1f6508
|
(v1.5.0.9012) ampc_cephalosporin_resistance for I
|
2021-01-25 21:58:00 +01:00 |
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24eb4453db
|
(v1.5.0.9011) small dosage update
|
2021-01-24 23:27:11 +01:00 |
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286eaa9699
|
(v1.5.0.9010) MDRO vignette update, get_episode for < day
|
2021-01-24 14:48:56 +01:00 |
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|
1a88caa119
|
(v1.5.0.9009) unit test fixes
|
2021-01-22 10:55:07 +01:00 |
|
|
|
1ba44776a1
|
(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
|
2021-01-22 10:20:41 +01:00 |
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|
27f084d819
|
(v1.5.0.9007) updated unit tests
|
2021-01-18 18:45:43 +01:00 |
|
|
|
4eab095306
|
(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
|
|
|
e95218c0d1
|
(v1.5.0.9005) custom MDRO guideline
|
2021-01-17 10:35:21 +01:00 |
|
|
|
e699de955c
|
(v1.5.0.9004) custom MDRO guideline
|
2021-01-17 00:26:48 +01:00 |
|
|
|
7ebc534ccd
|
(v1.5.0.9003) verbose output of mdro()
|
2021-01-15 22:44:52 +01:00 |
|
|
|
6745f3fb17
|
(v1.5.0.9002) doc update
|
2021-01-14 15:51:41 +01:00 |
|
|
|
bc00470dca
|
(v1.5.0.9001) more informative argument errors
|
2021-01-14 14:41:44 +01:00 |
|
|
|
d014955ce0
|
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
|
2021-01-12 22:08:04 +01:00 |
|
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|
3b84b8be75
|
v1.5.0
|
2021-01-06 11:16:17 +01:00 |
|
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|
8d117820b8
|
(v1.4.0.9060) ab class selector fix
|
2021-01-04 13:39:06 +01:00 |
|
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c9de74c81a
|
(v1.4.0.9059) ab class selector fix
|
2021-01-04 12:29:25 +01:00 |
|
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|
63a4dda467
|
(v1.4.0.9056) subsetting ab class selectors for base R
|
2021-01-03 23:40:05 +01:00 |
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d3f007bf65
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(v1.4.0.9053) unit test old R versions
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2020-12-29 21:23:01 +01:00 |
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526f8afb08
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(v1.4.0.9052) replaced all sapply's with type-safe vapply's
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2020-12-28 22:24:33 +01:00 |
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ccf13dd6c0
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(v1.4.0.9051) ab class
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2020-12-27 23:19:41 +01:00 |
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afc325c314
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(v1.4.0.9050) ab selectors base R
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2020-12-27 20:32:40 +01:00 |
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175e33abba
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(v1.4.0.9049) unit tests
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2020-12-27 15:07:01 +01:00 |
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ed198916bf
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(v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants
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2020-12-27 14:23:11 +01:00 |
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8b52f9b1be
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(v1.4.0.9047) unit tests
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2020-12-27 00:30:28 +01:00 |
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acbd0cf7ca
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(v1.4.0.9046) get_episode
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2020-12-27 00:07:00 +01:00 |
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291f802be3
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(v1.4.0.9045) unit tests
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2020-12-25 00:06:11 +01:00 |
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df37584189
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(v1.4.0.9044) mo tibble printing, mo_shortname() fix
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2020-12-24 23:29:10 +01:00 |
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128ebcfd62
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(v1.4.0.9043) documentation update
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2020-12-22 00:51:17 +01:00 |
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ee70883246
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(v1.4.0.9042) auto dark theme website
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2020-12-21 22:46:29 +01:00 |
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81af41da3a
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(v1.4.0.9041) updates based on review
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2020-12-17 16:22:25 +01:00 |
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