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python-wrapper

#109

#117

#134

#181

#192

#65

#67

#68

#71

#72

#77

#93

#97

v0.1.0

v0.1.1

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v2.0.0

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v2.1.1

0b8e89c845 Built site for AMR: 2.1.1.9013@f2d245b github-actions 2024-03-03 22:05:59 +00:00
f2d245b0cb update navbar colours dr. M.S. (Matthijs) Berends 2024-03-03 19:07:09 +01:00
ab367558fe Built site for AMR: 2.1.1.9012@46634bf github-actions 2024-02-25 16:02:51 +00:00
46634bfcaa navbar colour dr. M.S. (Matthijs) Berends 2024-02-25 16:48:04 +01:00
d707152fc2 Built site for AMR: 2.1.1.9010@8b43fed github-actions 2024-02-25 13:46:03 +00:00
8b43fed94d

Update _pkgdown.yml Matthijs Berends 2024-02-25 14:40:19 +01:00
8d077149fa new logo dr. M.S. (Matthijs) Berends 2024-02-25 14:20:43 +01:00
430d460276 Built site for AMR: 2.1.1.9009@b303662 github-actions 2024-02-24 18:32:41 +00:00
b303662ec6 fix veterinary for R<4 dr. M.S. (Matthijs) Berends 2024-02-24 19:26:35 +01:00
8611815e20 Built site for AMR: 2.1.1.9008@35963ca github-actions 2024-02-24 17:58:43 +00:00
35963ca3dc vctrs fix dr. M.S. (Matthijs) Berends 2024-02-24 18:51:37 +01:00
4aa5413641 fix unit test dr. M.S. (Matthijs) Berends 2024-02-24 18:14:50 +01:00
7be4dabbc0 support veterinary MIC/disk translation dr. M.S. (Matthijs) Berends 2024-02-24 15:16:52 +01:00
1460fadf40 Built site for AMR: 2.1.1.9004@74ea6c8 github-actions 2024-02-13 12:53:34 +00:00
74ea6c8c60

Added support for 'html' in italicize_taxonomy() (#134) Emil Rossing 2024-02-13 13:47:07 +01:00
4720b842e6 Built site for AMR: 2.1.1.9004@83e92fd github-actions 2023-12-04 07:26:20 +00:00
83e92fd88c docu fix dr. M.S. (Matthijs) Berends 2023-12-04 08:19:02 +01:00
d65eb144db Built site for AMR: 2.1.1.9003@7059568 github-actions 2023-12-03 15:57:17 +00:00
7059568581 fix scale functions dr. M.S. (Matthijs) Berends 2023-12-03 16:51:54 +01:00
09881c5781 Built site for AMR: 2.1.1.9002@c746176 github-actions 2023-12-03 10:41:04 +00:00
c7461766ce Remove RSI from package, add extra MIC scale functions dr. M.S. (Matthijs) Berends 2023-12-03 11:34:48 +01:00
3440c43dc4 Built site for AMR: 2.1.1.9001@6f417d0 github-actions 2023-12-03 00:14:24 +00:00
6f417d0ef2 add scale_x_mic() dr. M.S. (Matthijs) Berends 2023-12-03 01:06:00 +01:00
3c05a8bfc8 Built site for AMR: 2.1.1@4c11a7b github-actions 2023-10-22 13:59:03 +00:00
4c11a7bd9c v2.1.1 v2.1.1 dr. M.S. (Matthijs) Berends 2023-10-22 15:51:27 +02:00
8fe9437f7c Built site for AMR: 2.1.0.9004@ca72a64 github-actions 2023-10-20 13:51:27 +00:00
ca72a646d0 scientific notation for MICs dr. M.S. (Matthijs) Berends 2023-10-20 15:45:00 +02:00
d7a1dbb2b9 Built site for AMR: 2.1.0.9003@bcab4bc github-actions 2023-10-20 13:13:46 +00:00
bcab4bc9ba Fixes #123 dr. M.S. (Matthijs) Berends 2023-10-20 15:07:11 +02:00
8c3ab46914 Built site for AMR: 2.1.0.9002@7cda9e5 github-actions 2023-10-20 13:01:19 +00:00
7cda9e575b prepare for CRAN dr. M.S. (Matthijs) Berends 2023-10-20 14:51:48 +02:00
9f32027abc Built site for AMR: 2.1.0.9001@7dc9679 github-actions 2023-07-20 06:32:45 +00:00
7dc96794be fix rounding MICs on R-devel dr. M.S. (Matthijs) Berends 2023-07-20 08:24:27 +02:00
bc0fb5bd03 Built site for AMR: 2.1.0@a2cbbf4 github-actions 2023-07-16 14:25:05 +00:00
a2cbbf470e AMR v2.1.0 pre-release v2.1.0 dr. M.S. (Matthijs) Berends 2023-07-16 16:18:53 +02:00
faed08a2c9 Built site for AMR: 2.0.0.9045@7a4628b github-actions 2023-07-14 08:58:39 +00:00
7a4628b73f Added C. freundii complex and Y. pseudotuberculosis complex dr. M.S. (Matthijs) Berends 2023-07-14 10:49:06 +02:00
7e5894fcd4 Built site for AMR: 2.0.0.9044@fd480d1 github-actions 2023-07-14 08:02:32 +00:00
fd480d1a9a console hyperlink fix dr. M.S. (Matthijs) Berends 2023-07-14 09:50:13 +02:00
9bc1b49ea6 Built site for AMR: 2.0.0.9041@08f7256 github-actions 2023-07-13 11:52:09 +00:00
08f7256852 include unit tests again dr. M.S. (Matthijs) Berends 2023-07-13 12:45:14 +01:00
be8832a827 Built site for AMR: 2.0.0.9041@ddd01f9 github-actions 2023-07-13 08:50:52 +00:00
ddd01f9410 test to remove unit tests from build dr. M.S. (Matthijs) Berends 2023-07-13 09:42:37 +01:00
822244837d Built site for AMR: 2.0.0.9041@eff164e github-actions 2023-07-12 19:34:31 +00:00
eff164ecb1 indicate unique identifiers dr. M.S. (Matthijs) Berends 2023-07-12 21:26:32 +02:00
645974fb29 Built site for AMR: 2.0.0.9040@ea2a465 github-actions 2023-07-12 14:33:48 +00:00
363db948a2 Built site for AMR: 2.0.0.9039@e1b4f99 github-actions 2023-07-12 14:28:22 +00:00
ea2a4652e9 mouse-hover fixes dr. M.S. (Matthijs) Berends 2023-07-12 15:27:43 +01:00
e1b4f99f4f breakpoints fixes dr. M.S. (Matthijs) Berends 2023-07-12 15:20:04 +01:00
619bcd7ee9 Built site for AMR: 2.0.0.9038@0c46f61 github-actions 2023-07-12 14:11:31 +00:00
0c46f61260 MO group fixes dr. M.S. (Matthijs) Berends 2023-07-12 15:04:48 +01:00
b5e161a822 Built site for AMR: 2.0.0.9035@7cd9ca2 github-actions 2023-07-12 10:50:41 +00:00
9cf054903b version bump dr. M.S. (Matthijs) Berends 2023-07-12 11:42:29 +01:00
7cd9ca274c add strep groups to ABCG dr. M.S. (Matthijs) Berends 2023-07-12 11:41:25 +01:00
be187041ab Built site for AMR: 2.0.0.9035@66eeeb4 github-actions 2023-07-11 12:37:00 +00:00
66eeeb4b88 cleanup dr. M.S. (Matthijs) Berends 2023-07-11 14:29:40 +02:00
c04e1e825d Built site for AMR: 2.0.0.9034@8df1cd8 github-actions 2023-07-11 07:57:23 +00:00
8df1cd8d97 interpretation fixes dr. M.S. (Matthijs) Berends 2023-07-11 09:50:45 +02:00
3d586f1328 Built site for AMR: 2.0.0.9033@5e1221b github-actions 2023-07-10 17:13:17 +00:00
5e1221bceb unit test dr. M.S. (Matthijs) Berends 2023-07-10 19:04:12 +02:00
a617bbf941 Built site for AMR: 2.0.0.9032@dab20c0 github-actions 2023-07-10 16:37:37 +00:00
dab20c09f6 unit test dr. M.S. (Matthijs) Berends 2023-07-10 18:30:26 +02:00
d8d9452d24 Built site for AMR: 2.0.0.9031@1b499bf github-actions 2023-07-10 15:09:18 +00:00
1b499bf012 fixes dr. M.S. (Matthijs) Berends 2023-07-10 17:02:28 +02:00
97037aa011 Built site for AMR: 2.0.0.9030@a4e2e25 github-actions 2023-07-10 14:52:49 +00:00
a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate dr. M.S. (Matthijs) Berends 2023-07-10 16:43:46 +02:00
70c601ca11 breakpoints UTI interpretation fix dr. M.S. (Matthijs) Berends 2023-07-10 13:41:52 +02:00
958f761af3 Built site for AMR: 2.0.0.9028@3829311 github-actions 2023-07-08 19:10:45 +00:00
3829311dd3 random() fix dr. M.S. (Matthijs) Berends 2023-07-08 21:00:49 +02:00
acb534102b new species groups, updated clinical breakpoints dr. M.S. (Matthijs) Berends 2023-07-08 17:30:05 +02:00
967c45ea9f Built site for AMR: 2.0.0.9026@2d97cca github-actions 2023-06-26 12:00:05 +00:00
2d97cca6d9 fix reference_df endless loop dr. M.S. (Matthijs) Berends 2023-06-26 13:52:02 +02:00
f566ec1603 Built site for AMR: 2.0.0.9025@1d9ee39 github-actions 2023-06-22 13:35:18 +00:00
1d9ee39cc7 fix for mo codes dr. M.S. (Matthijs) Berends 2023-06-22 15:24:18 +02:00
9fabe8ad02 Built site for AMR: 2.0.0.9024@f065945 github-actions 2023-06-22 13:20:36 +00:00
f065945d7b

Update clinical breakpoints and fix some as.mo() bugs (#117) Dr. Matthijs Berends 2023-06-22 15:10:59 +02:00
a061a2a482 Built site for AMR: 2.0.0.9023@9591688 github-actions 2023-05-27 08:53:23 +00:00
9591688811 documentation update dr. M.S. (Matthijs) Berends 2023-05-27 10:39:22 +02:00
53b7f76c86 Built site for AMR: 2.0.0.9022@e196650 github-actions 2023-05-26 18:44:55 +00:00
e1966503ee unit testing R4.3 dr. M.S. (Matthijs) Berends 2023-05-26 20:37:00 +02:00
19c2925a0a Built site for AMR: 2.0.0.9021@766db4e github-actions 2023-05-26 17:31:22 +00:00
766db4e21f as.mo fix dr. M.S. (Matthijs) Berends 2023-05-26 19:20:21 +02:00
e0222b5d61 Built site for AMR: 2.0.0.9020@c6135d2 github-actions 2023-05-26 14:18:12 +00:00
c6135d2082 updated microorganism codes dr. M.S. (Matthijs) Berends 2023-05-26 16:10:01 +02:00
0470e7935b Built site for AMR: 2.0.0.9019@0bcf55d github-actions 2023-05-24 14:03:18 +00:00
0bcf55d3b6 improve as.mo() dr. M.S. (Matthijs) Berends 2023-05-24 15:55:53 +02:00
37a66e6447 Built site for AMR: 2.0.0.9018@3018fb8 github-actions 2023-05-17 20:20:27 +00:00
3018fb87a9 icu_exclude in first_isolate(), fixes #110 dr. M.S. (Matthijs) Berends 2023-05-17 22:12:10 +02:00
3bfb473562 Built site for AMR: 2.0.0.9015@5f9769a github-actions 2023-05-12 08:43:14 +00:00
5f9769a4f7

Add oxygen tolerance Dr. Matthijs Berends 2023-05-12 10:37:07 +02:00
8179092c57 add XPT files for SAS software dr. M.S. (Matthijs) Berends 2023-05-12 10:07:55 +02:00
91fa73dedf add oxygen tolerance dr. M.S. (Matthijs) Berends 2023-05-11 21:56:27 +02:00
c08773dd0b Built site for AMR: 2.0.0.9014@bf08d13 github-actions 2023-05-08 11:11:46 +00:00
bf08d136a0 fix coercing NA to custom codes, fixes #107 dr. M.S. (Matthijs) Berends 2023-05-08 13:04:18 +02:00
456f60ceaa Built site for AMR: 2.0.0.9013@9de19fd github-actions 2023-04-21 08:16:10 +00:00
9de19fdc49 documentation dr. M.S. (Matthijs) Berends 2023-04-21 10:07:25 +02:00
9c8a5eae2c Built site for AMR: 2.0.0.9012@9148a2d github-actions 2023-04-20 13:28:04 +00:00
9148a2dcf4 fix mo_rank() for 'unknown' MOs dr. M.S. (Matthijs) Berends 2023-04-20 15:20:41 +02:00
b7bbc5c384 Built site for AMR: 2.0.0.9011@2758615 github-actions 2023-04-18 22:44:09 +00:00
2758615cd0 version fix dr. M.S. (Matthijs) Berends 2023-04-19 00:34:41 +02:00