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eef00069fd add all options to documentation dr. M.S. (Matthijs) Berends 2023-01-23 20:07:57 +0100
9950851ea8 Built site for AMR: 1.8.2.9098@19fd0ef github-actions 2023-01-23 14:07:54 +0000
19fd0ef121 sort sir history dr. M.S. (Matthijs) Berends 2023-01-23 15:01:21 +0100
a7dcf5719c Built site for AMR: 1.8.2.9096@af139a3 github-actions 2023-01-21 23:00:34 +0000
af139a3c82

unit test fix for old R versions Dr. Matthijs Berends 2023-01-21 23:53:31 +0100
e289d2568d Built site for AMR: 1.8.2.9096@98e62c9 github-actions 2023-01-21 22:53:21 +0000
98e62c9af2

Replace RSI with SIR Dr. Matthijs Berends 2023-01-21 23:47:20 +0100
8198d23792 merge dr. M.S. (Matthijs) Berends 2023-01-21 23:25:35 +0100
bee402b0af NEWS dr. M.S. (Matthijs) Berends 2023-01-21 22:51:38 +0100
f60bb6aa2d fix note dr. M.S. (Matthijs) Berends 2023-01-21 20:57:45 +0100
8a92c5a869 remove MO_lookup from sysdata.rda dr. M.S. (Matthijs) Berends 2023-01-21 19:55:19 +0100
79c8415d3e fixes dr. M.S. (Matthijs) Berends 2023-01-21 11:47:02 +0100
ee38689172 fixes dr. M.S. (Matthijs) Berends 2023-01-21 11:07:55 +0100
bee337dfe0 fixes dr. M.S. (Matthijs) Berends 2023-01-21 09:55:45 +0100
c7da8b6479 update dr. M.S. (Matthijs) Berends 2023-01-20 11:30:40 +0100
d18dc71c10 Built site for AMR: 1.8.2.9095@24b1202 github-actions 2023-01-20 08:51:13 +0000
24b12024ce unit test fix dr. M.S. (Matthijs) Berends 2023-01-20 09:45:03 +0100
3152f1a1ce first edits dr. M.S. (Matthijs) Berends 2023-01-19 20:42:46 +0100
2b13d43a3f Built site for AMR: 1.8.2.9094@593d740 github-actions 2023-01-19 12:03:56 +0000
593d740b84 documentation, file permissions dr. M.S. (Matthijs) Berends 2023-01-19 12:54:53 +0100
deed569722 Built site for AMR: 1.8.2.9093@b94bc6c github-actions 2023-01-14 19:00:10 +0000
b94bc6c67b adding mo fixes dr. M.S. (Matthijs) Berends 2023-01-14 19:50:25 +0100
805dcaf92e Built site for AMR: 1.8.2.9092@ca79068 github-actions 2023-01-14 16:20:52 +0000
ca79068604 Fix for adding MO's dr. M.S. (Matthijs) Berends 2023-01-14 17:10:10 +0100
d37dc49b96 Built site for AMR: 1.8.2.9091@33f269e github-actions 2023-01-12 22:23:33 +0000
33f269e2f4 contrib update dr. M.S. (Matthijs) Berends 2023-01-12 23:16:05 +0100
32eee46345 Built site for AMR: 1.8.2.9090@51906d6 github-actions 2023-01-12 10:42:13 +0000
51906d6f97 no overwriting taxonomy when adding microorganisms dr. M.S. (Matthijs) Berends 2023-01-12 11:33:28 +0100
84a6877c99 Built site for AMR: 1.8.2.9089@1029aa2 github-actions 2023-01-07 14:00:57 +0000
1029aa2fdc algorithm improvement dr. M.S. (Matthijs) Berends 2023-01-07 14:53:14 +0100
6151d3f729 Built site for AMR: 1.8.2.9088@08fe5a8 github-actions 2023-01-07 01:01:36 +0000
08fe5a88c0 documentation dr. M.S. (Matthijs) Berends 2023-01-07 01:54:46 +0100
2375bfdcb5 documentation dr. M.S. (Matthijs) Berends 2023-01-07 01:51:19 +0100
32bfbe9286 Built site for AMR: 1.8.2.9086@84ed8c3 github-actions 2023-01-06 18:28:42 +0000
84ed8c32bb documentation dr. M.S. (Matthijs) Berends 2023-01-06 19:21:04 +0100
3feb675608 Built site for AMR: 1.8.2.9085@cf16bc7 github-actions 2023-01-06 12:51:55 +0000
cf16bc7de1 unit tests dr. M.S. (Matthijs) Berends 2023-01-06 13:45:20 +0100
e96db55bc2 Built site for AMR: 1.8.2.9084@86e28ba github-actions 2023-01-06 12:44:18 +0000
86e28bafce add mo_pathogenicity dr. M.S. (Matthijs) Berends 2023-01-06 13:35:37 +0100
49cc52e916 Built site for AMR: 1.8.2.9083@4801a60 github-actions 2023-01-06 10:29:11 +0000
4801a6067e unit tests dr. M.S. (Matthijs) Berends 2023-01-06 11:22:02 +0100
e665f73c92 Built site for AMR: 1.8.2.9082@8a0a0d4 github-actions 2023-01-06 09:16:17 +0000
8a0a0d4682 unit tests dr. M.S. (Matthijs) Berends 2023-01-06 10:08:25 +0100
72f176330e Built site for AMR: 1.8.2.9081@268ec31 github-actions 2023-01-05 17:29:06 +0000
268ec31d92 unit tests dr. M.S. (Matthijs) Berends 2023-01-05 18:21:48 +0100
8ae4799471 Built site for AMR: 1.8.2.9080@5361c0b github-actions 2023-01-05 14:48:37 +0000
5361c0b2a0 limit GitHub runners dr. M.S. (Matthijs) Berends 2023-01-05 15:41:07 +0100
784ee0812f Built site for AMR: 1.8.2.9079@51c0f08 github-actions 2023-01-05 14:09:34 +0000
51c0f0814e new setup unit tests dr. M.S. (Matthijs) Berends 2023-01-05 15:03:18 +0100
d3e437e13a Built site for AMR: 1.8.2.9078@a98d0d7 github-actions 2023-01-05 13:53:59 +0000
a98d0d75ea styler dep dr. M.S. (Matthijs) Berends 2023-01-05 14:46:44 +0100
a0ee86536a unit tests dr. M.S. (Matthijs) Berends 2023-01-05 14:43:18 +0100
ec8f871100 Built site for AMR: 1.8.2.9076@77d9cf1 github-actions 2022-12-30 12:10:58 +0000
77d9cf1936 documentation dr. M.S. (Matthijs) Berends 2022-12-30 13:02:37 +0100
e4ea96cbf9 fix for R < 3.4 dr. M.S. (Matthijs) Berends 2022-12-30 12:57:27 +0100
6a000be49b Built site for AMR: 1.8.2.9074@1db74e8 github-actions 2022-12-29 15:31:17 +0000
1db74e86cd good start-up practice dr. M.S. (Matthijs) Berends 2022-12-29 16:23:57 +0100
d81e09bddd Built site for AMR: 1.8.2.9073@61c0bdb github-actions 2022-12-28 14:12:34 +0000
61c0bdb7af documentation dr. M.S. (Matthijs) Berends 2022-12-28 15:04:59 +0100
2c1a204ab6 Built site for AMR: 1.8.2.9072@ba3b237 github-actions 2022-12-28 13:27:31 +0000
ba3b237bdf custom mo update dr. M.S. (Matthijs) Berends 2022-12-28 14:20:10 +0100
e731388cb5 Built site for AMR: 1.8.2.9071@fe09e92 github-actions 2022-12-27 15:14:41 +0000
fe09e9252b custom mo update dr. M.S. (Matthijs) Berends 2022-12-27 16:03:03 +0100
f619fb683b support new mo codes dr. M.S. (Matthijs) Berends 2022-12-27 15:16:15 +0100
b3effa8a4e Built site for AMR: 1.8.2.9069@e493248 github-actions 2022-12-21 08:22:11 +0000
e493248ea5 unit test and news file dr. M.S. (Matthijs) Berends 2022-12-21 09:12:53 +0100
e81f9bcf5e Built site for AMR: 1.8.2.9068@4c42a43 github-actions 2022-12-20 21:48:55 +0000
4c42a43f7d fixes dr. M.S. (Matthijs) Berends 2022-12-20 22:41:39 +0100
8cd53d7ba4 Built site for AMR: 1.8.2.9067@6f4bb60 github-actions 2022-12-20 21:28:07 +0000
6f4bb603ec unit tests dr. M.S. (Matthijs) Berends 2022-12-20 22:18:50 +0100
fe6945bfad Built site for AMR: 1.8.2.9066@f0a2cdb github-actions 2022-12-20 15:22:22 +0000
f0a2cdbf5e update mo algorithm dr. M.S. (Matthijs) Berends 2022-12-20 16:14:04 +0100
c5a5383b7b Built site for AMR: 1.8.2.9065@b1b7534 github-actions 2022-12-19 14:40:05 +0000
b1b7534c78 incorporate Bartlett et al (2022) dr. M.S. (Matthijs) Berends 2022-12-19 15:32:41 +0100
29c310e535 Built site for AMR: 1.8.2.9064@23fe427 github-actions 2022-12-17 13:39:03 +0000
23fe427cbc Fixes for Salmonella dr. M.S. (Matthijs) Berends 2022-12-17 14:31:33 +0100
d247365476 Built site for AMR: 1.8.2.9063@5f3a769 github-actions 2022-12-16 15:17:49 +0000
5f3a7694aa microorganisms update, added Salmonella groups dr. M.S. (Matthijs) Berends 2022-12-16 16:10:43 +0100
64384886d7 Built site for AMR: 1.8.2.9062@8da2467 github-actions 2022-12-11 23:23:03 +0000
8da2467209 updated taxonomy dr. M.S. (Matthijs) Berends 2022-12-12 00:14:56 +0100
7b50c6e9f7 Built site for AMR: 1.8.2.9061@eed1c14 github-actions 2022-12-11 10:50:34 +0000
eed1c14b96 website update dr. M.S. (Matthijs) Berends 2022-12-11 11:44:29 +0100
100f3d6fe0 Built site for AMR: 1.8.2.9060@b1ead9c github-actions 2022-12-10 09:16:44 +0000
b1ead9c0fe doc update dr. M.S. (Matthijs) Berends 2022-12-10 10:09:57 +0100
4dff2dbe6b Built site for AMR: 1.8.2.9059@e7d7b94 github-actions 2022-12-09 14:17:23 +0000
e7d7b94b3e no obligatory note on startup dr. M.S. (Matthijs) Berends 2022-12-09 15:10:49 +0100
09ffdc91e6 Built site for AMR: 1.8.2.9058@56dad34 github-actions 2022-12-09 12:44:45 +0000
56dad34e68 update prevalence with new phyla dr. M.S. (Matthijs) Berends 2022-12-09 13:37:08 +0100
d6a732817a Built site for AMR: 1.8.2.9057@ac55aa8 github-actions 2022-12-09 10:27:21 +0000
ac55aa84de add news dr. M.S. (Matthijs) Berends 2022-12-09 11:15:11 +0100
510140fc55 Updated mo_gramstain() to reflect current taxonomy, fixes #83 dr. M.S. (Matthijs) Berends 2022-12-09 10:30:25 +0100
a153eb2626 Built site for AMR: 1.8.2.9054@6017f81 github-actions 2022-11-29 18:45:20 +0000
6017f81e74

Update README.md Dr. Matthijs Berends 2022-11-29 19:38:17 +0100
0bc2afafe9 Built site for AMR: 1.8.2.9054@ba51c2d github-actions 2022-11-28 18:48:45 +0000
ba51c2d92f add column to as.mic() and as.disk() warnings dr. M.S. (Matthijs) Berends 2022-11-28 19:39:52 +0100
8c6795ca53 Built site for AMR: 1.8.2.9053@31fb81c github-actions 2022-11-24 19:37:19 +0000
31fb81c382 revised as.rsi(), fix for mdro() dr. M.S. (Matthijs) Berends 2022-11-24 20:29:00 +0100
a994768452 Built site for AMR: 1.8.2.9052@05d536e github-actions 2022-11-17 14:32:57 +0000
05d536ebb7 complexes dr. M.S. (Matthijs) Berends 2022-11-17 15:23:29 +0100
4b476d056c Built site for AMR: 1.8.2.9051@f6862a1 github-actions 2022-11-14 14:27:45 +0000