Commit Graph - AMR

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python-wrapper

sir-s3-update

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#226/merge

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v0.5.0

v0.6.0

v0.6.1

v0.7.0

v0.7.1

v0.8.0

v0.9.0

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v1.0.1

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v1.7.1

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v1.8.1

v1.8.2

v2.0.0

v2.1.0

v2.1.1

v3.0.0

v3.0.1

d07e9b904e new function get_locale dr. M.S. (Matthijs) Berends 2018-11-05 13:20:32 +01:00
e548a7ad11 equal != identical dr. M.S. (Matthijs) Berends 2018-11-02 15:04:48 +01:00
d0bc05e5b1 speed improvement is.rsi.eligible dr. M.S. (Matthijs) Berends 2018-11-02 14:55:29 +01:00
40a159e78d more unit tests dr. M.S. (Matthijs) Berends 2018-11-02 10:27:57 +01:00
e601fd259a test syntax fix dr. M.S. (Matthijs) Berends 2018-11-01 20:50:10 +01:00
5476fecc73 eucast update dr. M.S. (Matthijs) Berends 2018-11-01 20:23:33 +01:00
f7687557c9 eucast updates dr. M.S. (Matthijs) Berends 2018-11-01 17:06:08 +01:00
d3f5236690 simplify gitlab ci dr. M.S. (Matthijs) Berends 2018-10-31 13:42:35 +01:00
84825b33b1 small fix in gitlab CI dr. M.S. (Matthijs) Berends 2018-10-31 12:57:24 +01:00
9cd4ab928a speed improvement as.mo, freq title dr. M.S. (Matthijs) Berends 2018-10-31 12:10:49 +01:00
3d4c4c678b Merge branch 'master' of https://gitlab.com/msberends/AMR dr. M.S. (Matthijs) Berends 2018-10-29 17:26:32 +01:00
1bf8dc2983 as.mo speedup: assigned to namespace dr. M.S. (Matthijs) Berends 2018-10-29 17:26:17 +01:00
26be33cc21 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-28 13:24:02 +00:00
7f1013cd77 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-28 10:20:26 +00:00
c9802696ea Multiple artifacts dr. M.S. (Matthijs) Berends 2018-10-28 10:15:31 +00:00
65dd2ac422 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-28 09:23:01 +00:00
b827e49b2f Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-27 19:02:50 +00:00
6f57203616 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-26 09:20:53 +00:00
d1f1b4b7c4 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-26 08:26:30 +00:00
067233b9c1 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-26 06:58:41 +00:00
a2e2a281a5 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-26 06:24:32 +00:00
5538db97d9 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-26 06:15:36 +00:00
ac5421dfee Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-25 18:32:00 +00:00
f79ab3186b Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-25 16:20:39 +00:00
7df4db85b6 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 20:01:44 +00:00
d1029e3439 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 19:56:29 +00:00
4f556f9dbf Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 19:25:56 +00:00
639e6505d8 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 19:14:48 +00:00
24327bc7de Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 19:14:11 +00:00
1c5b413146 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 18:38:51 +00:00
986f795cb2 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 18:26:21 +00:00
0fefd73ae4 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 18:19:14 +00:00
db0e2a1413 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 18:15:56 +00:00
ed50867535 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 18:10:53 +00:00
7247dc6989 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 17:41:07 +00:00
e75e05cc61 Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 17:40:54 +00:00
2ea047838c Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 17:40:36 +00:00
ef5cc4cb5f Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 17:40:07 +00:00
5d1ddbbaaf Update .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-24 17:39:10 +00:00
b4e71cdc4f gitlab ci dr. M.S. (Matthijs) Berends 2018-10-23 23:17:53 +02:00
d681236791 gitlab ci dr. M.S. (Matthijs) Berends 2018-10-23 22:55:21 +02:00
19f056a6d7 xml2 dep for gitlab ci dr. M.S. (Matthijs) Berends 2018-10-23 22:25:53 +02:00
60747e56f0 gitlab fix dr. M.S. (Matthijs) Berends 2018-10-23 21:37:49 +02:00
9fd38afeb1 CI fix gitlab dr. M.S. (Matthijs) Berends 2018-10-23 21:26:57 +02:00
f4d6e1dafe CI fixes dr. M.S. (Matthijs) Berends 2018-10-23 21:17:05 +02:00
99323e704d linux deps dr. M.S. (Matthijs) Berends 2018-10-23 20:38:18 +02:00
0834bdfabc fix for gitlab pipeline, add covr to appveyor dr. M.S. (Matthijs) Berends 2018-10-23 20:04:11 +02:00
160e025609 try to fix gitlab pipelines dr. M.S. (Matthijs) Berends 2018-10-23 19:49:31 +02:00
87757748bd switch to gitlab dr. M.S. (Matthijs) Berends 2018-10-23 16:49:40 +02:00
707aa20a37 fixes dr. M.S. (Matthijs) Berends 2018-10-23 14:59:36 +02:00
0062a3facb Add .gitlab-ci.yml dr. M.S. (Matthijs) Berends 2018-10-23 12:53:42 +00:00
7997de6a6d mdro and 1st isolate improvements dr. M.S. (Matthijs) Berends 2018-10-23 11:15:05 +02:00
299c5bea43 na freq, removed factors dr. M.S. (Matthijs) Berends 2018-10-23 09:42:26 +02:00
9c56257da1 freq - print title bold in markdown dr. M.S. (Matthijs) Berends 2018-10-22 13:06:54 +02:00
c2a93b46db breaks param, tidyr dep change, freq markdown dr. M.S. (Matthijs) Berends 2018-10-22 12:32:59 +02:00
ec15b82fd6 param header for freq dr. M.S. (Matthijs) Berends 2018-10-19 21:52:08 +02:00
86b03577a7 fix for as.mo, added also_single_tested dr. M.S. (Matthijs) Berends 2018-10-19 13:53:31 +02:00
032c0d51ef better verbose in EUCAST dr. M.S. (Matthijs) Berends 2018-10-19 00:57:10 +02:00
b464dd524a new verbose dr. M.S. (Matthijs) Berends 2018-10-19 00:17:03 +02:00
5727800b9a readme fix dr. M.S. (Matthijs) Berends 2018-10-18 21:43:12 +02:00
0ef91be3ac param rules for EUCAST dr. M.S. (Matthijs) Berends 2018-10-18 12:10:10 +02:00
693f64bdbf new EUCAST rules: clinical breakpoints dr. M.S. (Matthijs) Berends 2018-10-17 17:32:34 +02:00
d5a41de711 parameter combine_IR dr. M.S. (Matthijs) Berends 2018-10-16 09:59:31 +02:00
5b5b95a47b count_all and some fixes dr. M.S. (Matthijs) Berends 2018-10-12 16:35:18 +02:00
e7d937d36e update NEWS dr. M.S. (Matthijs) Berends 2018-10-10 10:50:19 +02:00
67521394f6 more unit tests dr. M.S. (Matthijs) Berends 2018-10-09 15:41:44 +02:00
95c9fdc552 CRAN fixes for release 0.4.0 https://cran.r-project.org/web/checks/check_results_AMR.html dr. M.S. (Matthijs) Berends 2018-10-09 13:53:33 +02:00
c7c57f4042 0.4.0, just published on CRAN v0.4.0 dr. M.S. (Matthijs) Berends 2018-10-01 19:36:42 +02:00
6d761436f7 benchmarks on readme and speed improvement for direct mo codes dr. M.S. (Matthijs) Berends 2018-10-01 16:26:02 +02:00
ed17db0263 renamed year columns to ref dr. M.S. (Matthijs) Berends 2018-10-01 14:44:40 +02:00
3119a221e5 authors from ITIS, diff for freq dr. M.S. (Matthijs) Berends 2018-10-01 11:39:43 +02:00
92c9cc2608 diff for freq, fix for mo_shortname dr. M.S. (Matthijs) Berends 2018-09-29 21:54:32 +02:00
a6aa9e95fb completed old taxonomic names dr. M.S. (Matthijs) Berends 2018-09-28 20:13:13 +02:00
768fe17324 removed clipboard functions as it violated CRAN policies dr. M.S. (Matthijs) Berends 2018-09-28 16:05:18 +02:00
2b0080995e speed improvement for as.mo, more old taxonomic names dr. M.S. (Matthijs) Berends 2018-09-27 23:23:48 +02:00
450992baea new: 1680 old taxonomic names dr. M.S. (Matthijs) Berends 2018-09-25 16:44:40 +02:00
da60f27877 travis cant find knitr vignette builder dr. M.S. (Matthijs) Berends 2018-09-25 00:36:35 +02:00
9c566585b0 first inclusion of ITIS data dr. M.S. (Matthijs) Berends 2018-09-24 23:33:29 +02:00
df5d82fff3 unit tests dr. M.S. (Matthijs) Berends 2018-09-17 21:51:21 +02:00
5d80cef338 added taxonomic data from ITIS dr. M.S. (Matthijs) Berends 2018-09-17 20:53:32 +02:00
7680e4edd8 add shortest and longest to freq for characters dr. M.S. (Matthijs) Berends 2018-09-17 09:42:09 +02:00
db14781593 add labels_rsi_count dr. M.S. (Matthijs) Berends 2018-09-16 22:11:17 +02:00
b792a2754e added prevalence column and alterted as.mo algorith to use it, added ab_name as alias dr. M.S. (Matthijs) Berends 2018-09-16 16:43:29 +02:00
b0ca49d68d small improvement for is.rsi.eligible, more unit tests dr. M.S. (Matthijs) Berends 2018-09-14 11:54:01 +02:00
cf5711fb0b algorithm improvement dr. M.S. (Matthijs) Berends 2018-09-14 10:31:21 +02:00
d049ec9e69 ggplot2_rsi fix dr. M.S. (Matthijs) Berends 2018-09-13 14:48:34 +02:00
cb0d74a4f0 support for French and Italian, added quote to freq dr. M.S. (Matthijs) Berends 2018-09-10 15:45:25 +02:00
b83e6a9380 algoritm improvement, removed all Catabacter except for C. hongkongensis dr. M.S. (Matthijs) Berends 2018-09-10 11:40:54 +02:00
4816419f0c AI improvements for microorganisms dr. M.S. (Matthijs) Berends 2018-09-09 12:11:44 +02:00
936198372e translate CoNS dr. M.S. (Matthijs) Berends 2018-09-08 16:24:12 +02:00
26f5be0033 support for portuguese, language determination based on system dr. M.S. (Matthijs) Berends 2018-09-08 16:06:47 +02:00
b8a6c9af19 allow failure on macOS dr. M.S. (Matthijs) Berends 2018-09-07 10:20:01 +02:00
0de65438b1 vignet fix dr. M.S. (Matthijs) Berends 2018-09-07 09:32:31 +02:00
c5073f2fd1 small fix for microorganisms data set dr. M.S. (Matthijs) Berends 2018-09-06 16:50:03 +02:00
de36b0be23 fix for empty values in mo_property dr. M.S. (Matthijs) Berends 2018-09-05 12:21:27 +02:00
e39a9a8b05 added mo_shortname dr. M.S. (Matthijs) Berends 2018-09-05 10:51:46 +02:00
790bd1622d added vanA to vanE positive Enterococci dr. M.S. (Matthijs) Berends 2018-09-05 09:49:19 +02:00
b388e3fee7 Support for German and Spanish microorganism properties, cleanup dr. M.S. (Matthijs) Berends 2018-09-04 11:33:30 +02:00
5405002119 news update dr. M.S. (Matthijs) Berends 2018-09-03 11:22:28 +02:00
e25dd0e282 fix for joins dr. M.S. (Matthijs) Berends 2018-09-03 10:04:49 +02:00

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