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sir-s3-update

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8d902410f9 unit tests dr. M.S. (Matthijs) Berends 2023-02-18 14:56:06 +01:00
cdada2f940 Built site for AMR: 1.8.2.9135@8dcf101 github-actions 2023-02-18 12:17:35 +00:00
8dcf101a9c website dr. M.S. (Matthijs) Berends 2023-02-18 13:08:08 +01:00
ba255ddb00 website dr. M.S. (Matthijs) Berends 2023-02-18 11:57:17 +01:00
2183549fea Built site for AMR: 1.8.2.9133@e890360 github-actions 2023-02-17 12:20:23 +00:00
e890360986 website syntax update dr. M.S. (Matthijs) Berends 2023-02-17 11:39:00 +01:00
550fd47250 Built site for AMR: 1.8.2.9132@714a048 github-actions 2023-02-17 08:54:21 +00:00
714a048fa9 italicise antibiogram dr. M.S. (Matthijs) Berends 2023-02-17 09:42:51 +01:00
dee759ef9c Built site for AMR: 1.8.2.9131@db28301 github-actions 2023-02-15 18:56:18 +00:00
db2830124f fix for using dplyr::select() dr. M.S. (Matthijs) Berends 2023-02-15 19:48:34 +01:00
a82552dd88 fix for group selections dr. M.S. (Matthijs) Berends 2023-02-15 17:37:49 +01:00
ef716f6ee3 doc fix dr. M.S. (Matthijs) Berends 2023-02-15 17:16:40 +01:00
d4ae174c28 docs dr. M.S. (Matthijs) Berends 2023-02-15 17:03:34 +01:00
6016547f1f support for dplyr 1.1.0 dr. M.S. (Matthijs) Berends 2023-02-15 17:02:10 +01:00
259fe07455 Built site for AMR: 1.8.2.9126@fe41fc2 github-actions 2023-02-14 16:15:56 +00:00
fe41fc2e35 font size dr. M.S. (Matthijs) Berends 2023-02-14 16:57:48 +01:00
d5f778add6 Built site for AMR: 1.8.2.9125@8d37c75 github-actions 2023-02-14 15:11:20 +00:00
8d37c75860 unit tests dr. M.S. (Matthijs) Berends 2023-02-14 15:59:40 +01:00
7d4de8eb35 Built site for AMR: 1.8.2.9124@a4cd38c github-actions 2023-02-14 09:49:26 +00:00
a4cd38c433 fix for R < 3.2, expect_warning() on hold dr. M.S. (Matthijs) Berends 2023-02-14 10:41:01 +01:00
e0b5911d41 Built site for AMR: 1.8.2.9123@3396236 github-actions 2023-02-13 16:04:12 +00:00
3396236eef unit test fixes dr. M.S. (Matthijs) Berends 2023-02-13 16:56:25 +01:00
39d838ee3d Built site for AMR: 1.8.2.9122@b6d2b13 github-actions 2023-02-13 09:34:26 +00:00
b6d2b1398d Fix for antibiogram() in R <=3.4 dr. M.S. (Matthijs) Berends 2023-02-13 10:21:43 +01:00
a15da467b3 Built site for AMR: 1.8.2.9121@45a9697 github-actions 2023-02-12 16:20:08 +00:00
45a9697c84 unit tests dr. M.S. (Matthijs) Berends 2023-02-12 17:10:48 +01:00
7c0ad08c8a Built site for AMR: 1.8.2.9120@68abb00 github-actions 2023-02-12 14:18:14 +00:00
68abb00c59 add include_screening to as.sir() dr. M.S. (Matthijs) Berends 2023-02-12 15:09:54 +01:00
48896ee426 Built site for AMR: 1.8.2.9119@c740967 github-actions 2023-02-12 10:30:57 +00:00
c740967cf2 fix for binding rows dr. M.S. (Matthijs) Berends 2023-02-12 11:20:14 +01:00
31fd5db33b Built site for AMR: 1.8.2.9118@c51fb24 github-actions 2023-02-11 21:38:01 +00:00
c51fb24363 pm_bind_rows dr. M.S. (Matthijs) Berends 2023-02-11 22:28:48 +01:00
b146de6d7f fix for bind_rows2, added 4 langs dr. M.S. (Matthijs) Berends 2023-02-11 21:57:12 +01:00
2007c3eef3 bind_rows dr. M.S. (Matthijs) Berends 2023-02-10 17:09:48 +01:00
62f3d29455 Built site for AMR: 1.8.2.9115@03294c7 github-actions 2023-02-10 15:57:18 +00:00
03294c7901 fix for Salmonella group A, unit tests dr. M.S. (Matthijs) Berends 2023-02-10 16:47:25 +01:00
d6a21b332a Built site for AMR: 1.8.2.9114@bc434db github-actions 2023-02-10 15:26:36 +00:00
bc434db835 bring back antibiogram(), without deps dr. M.S. (Matthijs) Berends 2023-02-10 16:18:00 +01:00
70a7ba0206 fix first isolate dr. M.S. (Matthijs) Berends 2023-02-10 13:13:17 +01:00
1a0dc4bf46 revert back to pre-antibiogram dr. M.S. (Matthijs) Berends 2023-02-09 13:07:39 +01:00
769ace0b66 Built site for AMR: 1.8.2.9111@aa48c6b github-actions 2023-02-08 16:01:47 +00:00
aa48c6bf53 pm fixes dr. M.S. (Matthijs) Berends 2023-02-08 16:51:41 +01:00
822e9de82c pm update, unit test fix? dr. M.S. (Matthijs) Berends 2023-02-08 13:48:06 +01:00
4a54d59f70 tinytest dr. M.S. (Matthijs) Berends 2023-02-06 14:36:31 +01:00
75a4c1ef3e fixes2 dr. M.S. (Matthijs) Berends 2023-02-06 14:34:38 +01:00
f7dd890b79 fixes dr. M.S. (Matthijs) Berends 2023-02-06 12:38:52 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi dr. M.S. (Matthijs) Berends 2023-02-06 11:57:22 +01:00
4b133d4c96 unit tests dr. M.S. (Matthijs) Berends 2023-01-30 17:24:03 +01:00
89a577805f prelim fix for g.test dr. M.S. (Matthijs) Berends 2023-01-30 12:26:48 +01:00
c43e91eaee Built site for AMR: 1.8.2.9103@126afb0 github-actions 2023-01-24 15:39:56 +00:00
126afb01a4 unit tests 2 dr. M.S. (Matthijs) Berends 2023-01-24 16:31:00 +01:00
f31bb7259e Built site for AMR: 1.8.2.9102@c0d8888 github-actions 2023-01-24 15:18:28 +00:00
c0d8888ab7 unit tests dr. M.S. (Matthijs) Berends 2023-01-24 16:09:48 +01:00
21650ffec3 Built site for AMR: 1.8.2.9101@7b00b4f github-actions 2023-01-24 14:05:39 +00:00
7b00b4f34a unit tests dr. M.S. (Matthijs) Berends 2023-01-24 14:52:15 +01:00
93271b2c07 Built site for AMR: 1.8.2.9100@830c67f github-actions 2023-01-24 09:29:55 +00:00
830c67f1bf documentation, unit tests dr. M.S. (Matthijs) Berends 2023-01-24 10:20:27 +01:00
59c39dc5d1 Built site for AMR: 1.8.2.9099@eef0006 github-actions 2023-01-23 19:14:37 +00:00
eef00069fd add all options to documentation dr. M.S. (Matthijs) Berends 2023-01-23 20:07:57 +01:00
9950851ea8 Built site for AMR: 1.8.2.9098@19fd0ef github-actions 2023-01-23 14:07:54 +00:00
19fd0ef121 sort sir history dr. M.S. (Matthijs) Berends 2023-01-23 15:01:21 +01:00
a7dcf5719c Built site for AMR: 1.8.2.9096@af139a3 github-actions 2023-01-21 23:00:34 +00:00
af139a3c82 unit test fix for old R versions Dr. Matthijs Berends 2023-01-21 23:53:31 +01:00
e289d2568d Built site for AMR: 1.8.2.9096@98e62c9 github-actions 2023-01-21 22:53:21 +00:00
98e62c9af2 Replace RSI with SIR Dr. Matthijs Berends 2023-01-21 23:47:20 +01:00
d18dc71c10 Built site for AMR: 1.8.2.9095@24b1202 github-actions 2023-01-20 08:51:13 +00:00
24b12024ce unit test fix dr. M.S. (Matthijs) Berends 2023-01-20 09:45:03 +01:00
2b13d43a3f Built site for AMR: 1.8.2.9094@593d740 github-actions 2023-01-19 12:03:56 +00:00
593d740b84 documentation, file permissions dr. M.S. (Matthijs) Berends 2023-01-19 12:54:53 +01:00
deed569722 Built site for AMR: 1.8.2.9093@b94bc6c github-actions 2023-01-14 19:00:10 +00:00
b94bc6c67b adding mo fixes dr. M.S. (Matthijs) Berends 2023-01-14 19:50:25 +01:00
805dcaf92e Built site for AMR: 1.8.2.9092@ca79068 github-actions 2023-01-14 16:20:52 +00:00
ca79068604 Fix for adding MO's dr. M.S. (Matthijs) Berends 2023-01-14 17:10:10 +01:00
d37dc49b96 Built site for AMR: 1.8.2.9091@33f269e github-actions 2023-01-12 22:23:33 +00:00
33f269e2f4 contrib update dr. M.S. (Matthijs) Berends 2023-01-12 23:16:05 +01:00
32eee46345 Built site for AMR: 1.8.2.9090@51906d6 github-actions 2023-01-12 10:42:13 +00:00
51906d6f97 no overwriting taxonomy when adding microorganisms dr. M.S. (Matthijs) Berends 2023-01-12 11:33:28 +01:00
84a6877c99 Built site for AMR: 1.8.2.9089@1029aa2 github-actions 2023-01-07 14:00:57 +00:00
1029aa2fdc algorithm improvement dr. M.S. (Matthijs) Berends 2023-01-07 14:53:14 +01:00
6151d3f729 Built site for AMR: 1.8.2.9088@08fe5a8 github-actions 2023-01-07 01:01:36 +00:00
08fe5a88c0 documentation dr. M.S. (Matthijs) Berends 2023-01-07 01:54:46 +01:00
2375bfdcb5 documentation dr. M.S. (Matthijs) Berends 2023-01-07 01:51:19 +01:00
32bfbe9286 Built site for AMR: 1.8.2.9086@84ed8c3 github-actions 2023-01-06 18:28:42 +00:00
84ed8c32bb documentation dr. M.S. (Matthijs) Berends 2023-01-06 19:21:04 +01:00
3feb675608 Built site for AMR: 1.8.2.9085@cf16bc7 github-actions 2023-01-06 12:51:55 +00:00
cf16bc7de1 unit tests dr. M.S. (Matthijs) Berends 2023-01-06 13:45:20 +01:00
e96db55bc2 Built site for AMR: 1.8.2.9084@86e28ba github-actions 2023-01-06 12:44:18 +00:00
86e28bafce add mo_pathogenicity dr. M.S. (Matthijs) Berends 2023-01-06 13:35:37 +01:00
49cc52e916 Built site for AMR: 1.8.2.9083@4801a60 github-actions 2023-01-06 10:29:11 +00:00
4801a6067e unit tests dr. M.S. (Matthijs) Berends 2023-01-06 11:22:02 +01:00
e665f73c92 Built site for AMR: 1.8.2.9082@8a0a0d4 github-actions 2023-01-06 09:16:17 +00:00
8a0a0d4682 unit tests dr. M.S. (Matthijs) Berends 2023-01-06 10:08:25 +01:00
72f176330e Built site for AMR: 1.8.2.9081@268ec31 github-actions 2023-01-05 17:29:06 +00:00
268ec31d92 unit tests dr. M.S. (Matthijs) Berends 2023-01-05 18:21:48 +01:00
8ae4799471 Built site for AMR: 1.8.2.9080@5361c0b github-actions 2023-01-05 14:48:37 +00:00
5361c0b2a0 limit GitHub runners dr. M.S. (Matthijs) Berends 2023-01-05 15:41:07 +01:00
784ee0812f Built site for AMR: 1.8.2.9079@51c0f08 github-actions 2023-01-05 14:09:34 +00:00
51c0f0814e new setup unit tests dr. M.S. (Matthijs) Berends 2023-01-05 15:03:18 +01:00
d3e437e13a Built site for AMR: 1.8.2.9078@a98d0d7 github-actions 2023-01-05 13:53:59 +00:00
a98d0d75ea styler dep dr. M.S. (Matthijs) Berends 2023-01-05 14:46:44 +01:00