Commit Graph - AMR

P281424/AMR

Fork 0

mirror of https://github.com/msberends/AMR.git synced 2025-09-15 11:49:41 +02:00

Commit Graph

Select branches

Hide Pull Requests

gh-pages

main

python-wrapper

sir-s3-update

#109

#117

#134

#181

#192

#205

#212

#221

#226

#226

#65

#67

#68

#71

#72

#77

#93

#97

v0.1.0

v0.1.1

v0.2.0

v0.3.0

v0.4.0

v0.5.0

v0.6.0

v0.6.1

v0.7.0

v0.7.1

v0.8.0

v0.9.0

v1.0.0

v1.0.1

v1.1.0

v1.2.0

v1.3.0

v1.4.0

v1.5.0

v1.6.0

v1.7.0

v1.7.1

v1.8.0

v1.8.1

v1.8.2

v2.0.0

v2.1.0

v2.1.1

v3.0.0

9cf054903b version bump dr. M.S. (Matthijs) Berends 2023-07-12 11:42:29 +01:00
7cd9ca274c add strep groups to ABCG dr. M.S. (Matthijs) Berends 2023-07-12 11:41:25 +01:00
be187041ab Built site for AMR: 2.0.0.9035@66eeeb4 github-actions 2023-07-11 12:37:00 +00:00
66eeeb4b88 cleanup dr. M.S. (Matthijs) Berends 2023-07-11 14:29:40 +02:00
c04e1e825d Built site for AMR: 2.0.0.9034@8df1cd8 github-actions 2023-07-11 07:57:23 +00:00
8df1cd8d97 interpretation fixes dr. M.S. (Matthijs) Berends 2023-07-11 09:50:45 +02:00
3d586f1328 Built site for AMR: 2.0.0.9033@5e1221b github-actions 2023-07-10 17:13:17 +00:00
5e1221bceb unit test dr. M.S. (Matthijs) Berends 2023-07-10 19:04:12 +02:00
a617bbf941 Built site for AMR: 2.0.0.9032@dab20c0 github-actions 2023-07-10 16:37:37 +00:00
dab20c09f6 unit test dr. M.S. (Matthijs) Berends 2023-07-10 18:30:26 +02:00
d8d9452d24 Built site for AMR: 2.0.0.9031@1b499bf github-actions 2023-07-10 15:09:18 +00:00
1b499bf012 fixes dr. M.S. (Matthijs) Berends 2023-07-10 17:02:28 +02:00
97037aa011 Built site for AMR: 2.0.0.9030@a4e2e25 github-actions 2023-07-10 14:52:49 +00:00
a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate dr. M.S. (Matthijs) Berends 2023-07-10 16:43:46 +02:00
70c601ca11 breakpoints UTI interpretation fix dr. M.S. (Matthijs) Berends 2023-07-10 13:41:52 +02:00
958f761af3 Built site for AMR: 2.0.0.9028@3829311 github-actions 2023-07-08 19:10:45 +00:00
3829311dd3 random() fix dr. M.S. (Matthijs) Berends 2023-07-08 21:00:49 +02:00
acb534102b new species groups, updated clinical breakpoints dr. M.S. (Matthijs) Berends 2023-07-08 17:30:05 +02:00
967c45ea9f Built site for AMR: 2.0.0.9026@2d97cca github-actions 2023-06-26 12:00:05 +00:00
2d97cca6d9 fix reference_df endless loop dr. M.S. (Matthijs) Berends 2023-06-26 13:52:02 +02:00
f566ec1603 Built site for AMR: 2.0.0.9025@1d9ee39 github-actions 2023-06-22 13:35:18 +00:00
1d9ee39cc7 fix for mo codes dr. M.S. (Matthijs) Berends 2023-06-22 15:24:18 +02:00
9fabe8ad02 Built site for AMR: 2.0.0.9024@f065945 github-actions 2023-06-22 13:20:36 +00:00
f065945d7b Update clinical breakpoints and fix some as.mo() bugs (#117) Dr. Matthijs Berends 2023-06-22 15:10:59 +02:00
a061a2a482 Built site for AMR: 2.0.0.9023@9591688 github-actions 2023-05-27 08:53:23 +00:00
9591688811 documentation update dr. M.S. (Matthijs) Berends 2023-05-27 10:39:22 +02:00
53b7f76c86 Built site for AMR: 2.0.0.9022@e196650 github-actions 2023-05-26 18:44:55 +00:00
e1966503ee unit testing R4.3 dr. M.S. (Matthijs) Berends 2023-05-26 20:37:00 +02:00
19c2925a0a Built site for AMR: 2.0.0.9021@766db4e github-actions 2023-05-26 17:31:22 +00:00
766db4e21f as.mo fix dr. M.S. (Matthijs) Berends 2023-05-26 19:20:21 +02:00
e0222b5d61 Built site for AMR: 2.0.0.9020@c6135d2 github-actions 2023-05-26 14:18:12 +00:00
c6135d2082 updated microorganism codes dr. M.S. (Matthijs) Berends 2023-05-26 16:10:01 +02:00
0470e7935b Built site for AMR: 2.0.0.9019@0bcf55d github-actions 2023-05-24 14:03:18 +00:00
0bcf55d3b6 improve as.mo() dr. M.S. (Matthijs) Berends 2023-05-24 15:55:53 +02:00
37a66e6447 Built site for AMR: 2.0.0.9018@3018fb8 github-actions 2023-05-17 20:20:27 +00:00
3018fb87a9 icu_exclude in first_isolate(), fixes #110 dr. M.S. (Matthijs) Berends 2023-05-17 22:12:10 +02:00
3bfb473562 Built site for AMR: 2.0.0.9015@5f9769a github-actions 2023-05-12 08:43:14 +00:00
5f9769a4f7 Add oxygen tolerance Dr. Matthijs Berends 2023-05-12 10:37:07 +02:00
8179092c57 add XPT files for SAS software dr. M.S. (Matthijs) Berends 2023-05-12 10:07:55 +02:00
91fa73dedf add oxygen tolerance dr. M.S. (Matthijs) Berends 2023-05-11 21:56:27 +02:00
c08773dd0b Built site for AMR: 2.0.0.9014@bf08d13 github-actions 2023-05-08 11:11:46 +00:00
bf08d136a0 fix coercing NA to custom codes, fixes #107 dr. M.S. (Matthijs) Berends 2023-05-08 13:04:18 +02:00
456f60ceaa Built site for AMR: 2.0.0.9013@9de19fd github-actions 2023-04-21 08:16:10 +00:00
9de19fdc49 documentation dr. M.S. (Matthijs) Berends 2023-04-21 10:07:25 +02:00
9c8a5eae2c Built site for AMR: 2.0.0.9012@9148a2d github-actions 2023-04-20 13:28:04 +00:00
9148a2dcf4 fix mo_rank() for 'unknown' MOs dr. M.S. (Matthijs) Berends 2023-04-20 15:20:41 +02:00
b7bbc5c384 Built site for AMR: 2.0.0.9011@2758615 github-actions 2023-04-18 22:44:09 +00:00
2758615cd0 version fix dr. M.S. (Matthijs) Berends 2023-04-19 00:34:41 +02:00
02322ac2ee Fix PK/PD breakpoints dr. M.S. (Matthijs) Berends 2023-04-19 00:31:31 +02:00
dd75cf872c Built site for AMR: 2.0.0.9009@cabffb2 github-actions 2023-04-17 09:37:31 +00:00
cabffb22fd anaerobic codes dr. M.S. (Matthijs) Berends 2023-04-17 11:26:19 +02:00
9d1e78f897 Built site for AMR: 2.0.0.9008@ad3061c github-actions 2023-04-15 08:42:06 +00:00
ad3061c754 unit test dr. M.S. (Matthijs) Berends 2023-04-15 10:32:37 +02:00
e382efa66b Built site for AMR: 2.0.0.9007@1a02d30 github-actions 2023-04-15 07:41:57 +00:00
1a02d302d4 Fix translatable strings dr. M.S. (Matthijs) Berends 2023-04-15 09:32:13 +02:00
5491fb7088 Built site for AMR: 2.0.0.9006@ed70f95 github-actions 2023-04-15 05:24:07 +00:00
ed70f95380 Fix clinical breakpoints dr. M.S. (Matthijs) Berends 2023-04-14 23:14:34 +02:00
cc245a41a0 Built site for AMR: 2.0.0.9005@147f911 github-actions 2023-04-14 09:23:10 +00:00
147f9112e9 Fix some WHONET codes dr. M.S. (Matthijs) Berends 2023-04-14 11:12:26 +02:00
4f0b1843a3 Built site for AMR: 2.0.0.9004@549790c github-actions 2023-03-20 21:10:09 +00:00
549790c2a6 website dr. M.S. (Matthijs) Berends 2023-03-20 21:59:50 +01:00
bd4f12016d Built site for AMR: 2.0.0.9003@c28cfa3 github-actions 2023-03-16 08:03:33 +00:00
c28cfa3a77 fix documentation dr. M.S. (Matthijs) Berends 2023-03-16 08:55:37 +01:00
f56524ba9c Built site for AMR: 2.0.0.9002@dd7cc86 github-actions 2023-03-14 19:00:19 +00:00
dd7cc86485 help page %like% dr. M.S. (Matthijs) Berends 2023-03-14 19:49:50 +01:00
e72c161f5f Built site for AMR: 2.0.0@68aa98f github-actions 2023-03-12 15:05:25 +00:00
68aa98f294 website dr. M.S. (Matthijs) Berends 2023-03-12 15:59:25 +01:00
cb279602b6 Built site for AMR: 2.0.0@dee675e github-actions 2023-03-12 13:14:27 +00:00
dee675e717 Version 2.0 on CRAN v2.0.0 dr. M.S. (Matthijs) Berends 2023-03-12 14:07:45 +01:00
2f947f2a87 Built site for AMR: 1.8.2.9152@80cfc50 github-actions 2023-03-12 12:10:15 +00:00
80cfc503c2 check for 2.0 dr. M.S. (Matthijs) Berends 2023-03-12 13:02:37 +01:00
cf002cfefa Built site for AMR: 1.8.2.9151@9179e98 github-actions 2023-03-11 16:23:32 +00:00
9179e98e12 patient ID in first isolate dr. M.S. (Matthijs) Berends 2023-03-11 17:13:19 +01:00
7cc570249b Built site for AMR: 1.8.2.9150@7ad8635 github-actions 2023-03-11 16:02:25 +00:00
7ad8635994 documentation for 'data.table' AB selectors dr. M.S. (Matthijs) Berends 2023-03-11 16:54:02 +01:00
45e840c02f update NEWS dr. M.S. (Matthijs) Berends 2023-03-11 14:43:31 +01:00
7f1c20a0e8 Built site for AMR: 1.8.2.9148@262598b github-actions 2023-03-11 13:32:27 +00:00
262598b8d7 support for old rsi arguments dr. M.S. (Matthijs) Berends 2023-03-11 14:24:34 +01:00
0484d7ab4d Built site for AMR: 1.8.2.9147@4416394 github-actions 2023-02-26 20:34:01 +00:00
4416394e10 website update dr. M.S. (Matthijs) Berends 2023-02-26 21:26:58 +01:00
0be2d50036 Built site for AMR: 1.8.2.9146@1d3d7d4 github-actions 2023-02-24 19:02:09 +00:00
1d3d7d40bc get episode unit tests dr. M.S. (Matthijs) Berends 2023-02-24 19:54:56 +01:00
074df34e9a Built site for AMR: 1.8.2.9145@2c5a9bb github-actions 2023-02-24 16:15:07 +00:00
2c5a9bb622 new relative episode determination in get_episode(), fix for plotting disk/MIC values dr. M.S. (Matthijs) Berends 2023-02-24 17:06:30 +01:00
9857914f74 Built site for AMR: 1.8.2.9144@92029c9 github-actions 2023-02-24 09:40:06 +00:00
92029c9e95 remove note dr. M.S. (Matthijs) Berends 2023-02-24 10:31:36 +01:00
82ad5d095f Built site for AMR: 1.8.2.9143@049baf0 github-actions 2023-02-24 08:51:48 +00:00
049baf0a71 fix for antibiograms on R < 3.5 dr. M.S. (Matthijs) Berends 2023-02-24 09:43:10 +01:00
09b3187184 Built site for AMR: 1.8.2.9142@e70f2cd github-actions 2023-02-23 15:36:44 +00:00
e70f2cd32c knitr format dr. M.S. (Matthijs) Berends 2023-02-23 16:27:40 +01:00
fefbb46ec6 Built site for AMR: 1.8.2.9141@a84101d github-actions 2023-02-22 15:34:03 +00:00
a84101db08 N for only 1 AB in dr. M.S. (Matthijs) Berends 2023-02-22 16:26:13 +01:00
705ab0e847 Built site for AMR: 1.8.2.9140@551aaf6 github-actions 2023-02-22 15:09:09 +00:00
551aaf6517 auto-remove missing ABs in antibiogram() dr. M.S. (Matthijs) Berends 2023-02-22 16:00:52 +01:00
1fe0350d15 Built site for AMR: 1.8.2.9139@c2cfc5e github-actions 2023-02-22 14:50:02 +00:00
c2cfc5ef84 fix for antibiogram(), transform WHONET data set to sir dr. M.S. (Matthijs) Berends 2023-02-22 15:40:05 +01:00
69dc8795ae Built site for AMR: 1.8.2.9138@dad2530 github-actions 2023-02-22 13:47:35 +00:00
dad25302f2 make rsi work in more cases, documentation update dr. M.S. (Matthijs) Berends 2023-02-22 14:38:57 +01:00
8685119254 Built site for AMR: 1.8.2.9137@380cbec github-actions 2023-02-18 14:06:39 +00:00
380cbec0e8 prehook dr. M.S. (Matthijs) Berends 2023-02-18 14:58:02 +01:00