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v3.0.1

127892430d (v2.1.1.9078) 12 new formatting formats for antibiogram(), prepare for Bayesian WISCA dr. M.S. (Matthijs) Berends 2024-09-22 11:45:51 +02:00
f769324f08 Built site for AMR@2.1.1.9077: 28bf91c github-actions 2024-09-19 12:48:19 +00:00
28bf91cbf5 (v2.1.1.9077) fix logos dr. M.S. (Matthijs) Berends 2024-09-19 14:40:19 +02:00
82239503ee (v2.1.1.9076) dr. M.S. (Matthijs) Berends 2024-09-19 14:22:09 +02:00
a88472a263 test new git hook dr. M.S. (Matthijs) Berends 2024-09-19 14:20:03 +02:00
2f239e59c4 Built site for AMR@2.1.1.9073: 2975697 github-actions 2024-09-19 12:05:20 +00:00
29756977cf no-verify dr. M.S. (Matthijs) Berends 2024-09-19 13:58:41 +02:00
4e96a56b6a (v2.1.1.9073) unit tests dr. M.S. (Matthijs) Berends 2024-09-19 13:57:36 +02:00
ef8ef28650 (v2.1.1.9072) dr. M.S. (Matthijs) Berends 2024-09-19 11:46:17 +02:00
ddb23b6e73 (v2.1.1.9071) update veterinary SIR interpretation, add only_fungi dr. M.S. (Matthijs) Berends 2024-09-19 11:44:56 +02:00
573c0346ed (v2.1.1.9070) fix for mo_current mo (no-verify) dr. M.S. (Matthijs) Berends 2024-07-19 18:04:45 +02:00
83907c9c65 add files (no-verify) dr. M.S. (Matthijs) Berends 2024-07-17 14:31:09 +02:00
7258a491b9 (v2.1.1.9068) fix for mo_url() and as.mo() for synonyms dr. M.S. (Matthijs) Berends 2024-07-17 14:29:55 +02:00
fd917ad2bb Built site for AMR@2.1.1.9066: 63f6790 github-actions 2024-07-16 14:16:29 +00:00
63f6790c58 add (no-verify) dr. M.S. (Matthijs) Berends 2024-07-16 16:10:38 +02:00
b94dac770c (v2.1.1.9066) git hook fix? dr. M.S. (Matthijs) Berends 2024-07-16 16:09:33 +02:00
ff03bb6471 (v2.1.1.9065) unit tests 2 dr. M.S. (Matthijs) Berends 2024-07-16 15:58:18 +02:00
7f344836ea (v2.1.1.9064) unit tests dr. M.S. (Matthijs) Berends 2024-07-16 15:55:58 +02:00
230bbd3722 Built site for AMR@2.1.1.9063: 640888f github-actions 2024-07-16 13:00:55 +00:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update dr. M.S. (Matthijs) Berends 2024-07-16 14:51:57 +02:00
1ffdce6eeb cli-147-2111 github-actions 2024-06-23 14:24:50 +00:00
4f9db23684 check for windows unit test (no-check) dr. M.S. (Matthijs) Berends 2024-06-23 16:18:42 +02:00
dba1186b76 cli-147-2111 github-actions 2024-06-19 13:47:27 +00:00
82585901a7 (v2.1.1.9061) animal host fix dr. M.S. (Matthijs) Berends 2024-06-19 15:41:45 +02:00
3c6ea5dbb1 cli-147-2126 github-actions 2024-06-19 13:14:41 +00:00
c67d003e9e (v2.1.1.9060) SDD results now in as.sir() dr. M.S. (Matthijs) Berends 2024-06-19 15:08:23 +02:00
7b8d4eee83 cli-147-2126 github-actions 2024-06-17 20:32:17 +00:00
0c3d81f32e (v2.1.1.9059) documentation fix dr. M.S. (Matthijs) Berends 2024-06-17 22:26:05 +02:00
12a9c6f82c cli-147-2126 github-actions 2024-06-17 20:25:41 +00:00
1bc2e04e1c (v2.1.1.9058) fix hosts, add translations dr. M.S. (Matthijs) Berends 2024-06-17 22:19:38 +02:00
67acf7984e cli-147-2126 github-actions 2024-06-17 14:58:07 +00:00
a4dc37a4e4 (v2.1.1.9057) fix for missing breakpoints dr. M.S. (Matthijs) Berends 2024-06-17 16:52:12 +02:00
06dde43311 cli-147-2091 github-actions 2024-06-17 12:58:17 +00:00
d9e66fb118 (v2.1.1.9056) example fix dr. M.S. (Matthijs) Berends 2024-06-17 14:52:18 +02:00
74e5d17657 cli-147-2091 github-actions 2024-06-17 12:44:59 +00:00
1e65b5a289 (v2.1.1.9055) example fix dr. M.S. (Matthijs) Berends 2024-06-17 14:36:40 +02:00
72f312843f cli-6201-2091 github-actions 2024-06-17 12:16:15 +00:00
13baf8d7be (v2.1.1.9054) fix examples dr. M.S. (Matthijs) Berends 2024-06-17 13:52:02 +02:00
de6c43b84a cli-147-2091 github-actions 2024-06-17 08:46:35 +00:00
2dee1d71dc (v2.1.1.9053) add verbose to as.sir(), unit test fix dr. M.S. (Matthijs) Berends 2024-06-17 10:38:45 +02:00
fa715b9e44 cli-147-2091 github-actions 2024-06-16 19:00:31 +00:00
68f7795481 (v2.1.1.9052) unit test fix dr. M.S. (Matthijs) Berends 2024-06-16 20:53:50 +02:00
236ec09721 cli-147-2043 github-actions 2024-06-16 09:34:56 +00:00
4ffac7e22d (v2.1.1.9051) fix VGS mo code dr. M.S. (Matthijs) Berends 2024-06-16 11:28:56 +02:00
51f4d0e546 cli-147-2043 github-actions 2024-06-15 13:40:21 +00:00
bdbf5198a2 (v2.1.1.9050) vctrs fix for sir, small documentation fixes dr. M.S. (Matthijs) Berends 2024-06-15 15:33:49 +02:00
8e108a2243 cli-147-2111 github-actions 2024-06-14 20:48:53 +00:00
9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add AMO, set NI instead of N dr. M.S. (Matthijs) Berends 2024-06-14 22:39:01 +02:00
122d0c536c cli-147-2111 github-actions 2024-06-13 19:01:17 +00:00
de17de1be9 (v2.1.1.9048) vctrs update for sir dr. M.S. (Matthijs) Berends 2024-06-13 20:55:17 +02:00
a96b1c7684 cli-147-2111 github-actions 2024-06-13 05:43:57 +00:00
3179216c81 (v2.1.1.9047) unit test and index dr. M.S. (Matthijs) Berends 2024-06-13 07:37:53 +02:00
79ff526e9c cli-147-2111 github-actions 2024-06-12 12:43:32 +00:00
cd1b37ff69 (v2.1.1.9046) unit test fix dr. M.S. (Matthijs) Berends 2024-06-12 14:37:44 +02:00
98c6dedd1c cli-147-2111 github-actions 2024-06-12 08:41:03 +00:00
c753afcd76 (v2.1.1.9045) fix host in animal guidelines dr. M.S. (Matthijs) Berends 2024-06-12 10:32:43 +02:00
271ab5b1ae cli-147-2111 github-actions 2024-06-10 13:16:37 +00:00
3a54711dfe (v2.1.1.9044) update website dr. M.S. (Matthijs) Berends 2024-06-10 15:10:54 +02:00
374627273f cli-147-2111 github-actions 2024-06-10 08:40:19 +00:00
31207952d3 (v2.1.1.9043) fix sir translation with as.double dr. M.S. (Matthijs) Berends 2024-06-10 10:34:45 +02:00
a3071cf58b (v2.1.1.9042) update translations and example isolates dr. M.S. (Matthijs) Berends 2024-06-09 11:31:04 +02:00
af74e1d4f2 (v2.1.1.9041) antibiotics update dr. M.S. (Matthijs) Berends 2024-06-08 17:35:25 +02:00
e2acc513a5 (v2.1.1.9040) try to put version number in commit msg dr. M.S. (Matthijs) Berends 2024-06-07 12:07:07 +02:00
0bda9e9997 try to add version to commit msg dr. M.S. (Matthijs) Berends 2024-06-04 20:21:12 +02:00
c5981cdeb3 fix unit test dr. M.S. (Matthijs) Berends 2024-06-04 20:17:54 +02:00
062a7eba40 cli-147-2242 github-actions 2024-05-31 19:30:09 +00:00
7c1b564648 fix SIR interpretation for uti dr. M.S. (Matthijs) Berends 2024-05-31 21:24:35 +02:00
83fdd7b9a0 cli-147-2226 github-actions 2024-05-31 08:03:30 +00:00
60c6c21e45 fix SIR interpretation dr. M.S. (Matthijs) Berends 2024-05-31 09:50:54 +02:00
0f7643dd96 cli-147-2226 github-actions 2024-05-30 14:45:24 +00:00
ba4dc20cf3 autoplot fix dr. M.S. (Matthijs) Berends 2024-05-30 16:39:59 +02:00
0182344680 cli-147-2226 github-actions 2024-05-30 14:07:29 +00:00
d4490c7f25 fix sorting of MICs, MIC autoplot titles dr. M.S. (Matthijs) Berends 2024-05-30 15:50:17 +02:00
82ec49a31f cli-147-2196 github-actions 2024-05-24 13:13:13 +00:00
c3ce1b551d rename limit_mic_range() to rescale_mic() dr. M.S. (Matthijs) Berends 2024-05-24 15:07:41 +02:00
0b0a4b6a51 cli-147-2196 github-actions 2024-05-20 19:35:19 +00:00
d214f74e25 allow column name for ab in as.sir() dr. M.S. (Matthijs) Berends 2024-05-20 21:29:13 +02:00
704eb041fa cli-147-2226 github-actions 2024-05-20 17:04:05 +00:00
fc269e667d unit test fix dr. M.S. (Matthijs) Berends 2024-05-20 18:58:35 +02:00
08a27922a8 new SDD and N for as.sir() dr. M.S. (Matthijs) Berends 2024-05-20 15:27:04 +02:00
bb51c7b8b3 cli-147-2226 github-actions 2024-05-12 14:32:36 +00:00
b68f47d985 improved algorithm of as.ab() dr. M.S. (Matthijs) Berends 2024-05-12 16:24:44 +02:00
1bce7ed3d3 fix git hooks dr. M.S. (Matthijs) Berends 2024-04-24 11:58:16 +02:00
7f18e66c4e unit test fix dr. M.S. (Matthijs) Berends 2024-04-24 11:42:43 +02:00
fad0489eed cli-154-2226 github-actions 2024-04-24 08:06:58 +00:00
3e5c7d45c6 update intro logo dr. M.S. (Matthijs) Berends 2024-04-24 09:58:24 +02:00
25089e811e correct for high-level abx dr. M.S. (Matthijs) Berends 2024-04-24 09:50:32 +02:00
eb326fa2fa cli-154-2226 github-actions 2024-04-23 09:02:01 +00:00
0d8a91db49 rename pre-commit hook to pre-commit checks (no-check) dr. M.S. (Matthijs) Berends 2024-04-23 10:55:48 +02:00
25024fa1d8 cli-154-2226 github-actions 2024-04-23 08:39:01 +00:00
04df6dfcf5 fix website nav header (no-check) dr. M.S. (Matthijs) Berends 2024-04-23 10:33:26 +02:00
35f095cceb fixes #148 dr. M.S. (Matthijs) Berends 2024-04-23 09:34:05 +02:00
6eb417125c cli-154-2226 github-actions 2024-04-19 08:24:46 +00:00
2899b3c840 new mo_group_members() dr. M.S. (Matthijs) Berends 2024-04-19 10:18:21 +02:00
158b328929 Built site for AMR: 2.1.1.9018@7e7bc9d github-actions 2024-04-08 08:04:57 +00:00
7e7bc9d56e Merge branch 'main' of https://github.com/msberends/AMR dr. M.S. (Matthijs) Berends 2024-04-08 09:58:54 +02:00
d2c5e4b749 update website colours dr. M.S. (Matthijs) Berends 2024-04-08 09:55:21 +02:00
62d8ae3b8a Built site for AMR: 2.1.1.9017@42a23e8 github-actions 2024-04-07 22:58:24 +00:00
42a23e89a8 Update DESCRIPTION Matthijs Berends 2024-04-08 00:52:25 +02:00
94e9a4d99b update MIC implementation dr. M.S. (Matthijs) Berends 2024-04-07 20:22:59 +02:00