Commit Graph

647 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 0bcf55d3b6 improve `as.mo()` 2023-05-24 15:55:53 +02:00
dr. M.S. (Matthijs) Berends 91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends bf08d136a0 fix coercing `NA` to custom codes, fixes #107 2023-05-08 13:04:18 +02:00
dr. M.S. (Matthijs) Berends 9148a2dcf4 fix `mo_rank()` for 'unknown' MOs 2023-04-20 15:20:41 +02:00
dr. M.S. (Matthijs) Berends 02322ac2ee Fix PK/PD breakpoints 2023-04-19 00:31:31 +02:00
dr. M.S. (Matthijs) Berends ed70f95380 Fix clinical breakpoints 2023-04-14 23:14:34 +02:00
dr. M.S. (Matthijs) Berends 147f9112e9 Fix some WHONET codes 2023-04-14 11:12:26 +02:00
dr. M.S. (Matthijs) Berends 549790c2a6 website 2023-03-20 21:59:50 +01:00
dr. M.S. (Matthijs) Berends c28cfa3a77 fix documentation 2023-03-16 08:55:37 +01:00
dr. M.S. (Matthijs) Berends dd7cc86485 help page %like% 2023-03-14 19:49:50 +01:00
dr. M.S. (Matthijs) Berends 80cfc503c2 check for 2.0 2023-03-12 13:02:37 +01:00
dr. M.S. (Matthijs) Berends 7ad8635994 documentation for 'data.table' AB selectors 2023-03-11 16:54:02 +01:00
dr. M.S. (Matthijs) Berends 45e840c02f update NEWS 2023-03-11 14:43:31 +01:00
dr. M.S. (Matthijs) Berends 262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
dr. M.S. (Matthijs) Berends 1d3d7d40bc get episode unit tests 2023-02-24 19:54:56 +01:00
dr. M.S. (Matthijs) Berends 2c5a9bb622 new relative episode determination in `get_episode()`, fix for plotting disk/MIC values 2023-02-24 17:06:30 +01:00
dr. M.S. (Matthijs) Berends 92029c9e95 remove note 2023-02-24 10:31:36 +01:00
dr. M.S. (Matthijs) Berends 049baf0a71 fix for antibiograms on R < 3.5 2023-02-24 09:43:10 +01:00
dr. M.S. (Matthijs) Berends e70f2cd32c knitr format 2023-02-23 16:27:40 +01:00
dr. M.S. (Matthijs) Berends a84101db08 N for only 1 AB in 2023-02-22 16:26:13 +01:00
dr. M.S. (Matthijs) Berends c2cfc5ef84 fix for `antibiogram()`, transform `WHONET` data set to `sir` 2023-02-22 15:40:05 +01:00
dr. M.S. (Matthijs) Berends dad25302f2 make `rsi` work in more cases, documentation update 2023-02-22 14:38:57 +01:00
dr. M.S. (Matthijs) Berends e890360986 website syntax update 2023-02-17 11:39:00 +01:00
dr. M.S. (Matthijs) Berends 714a048fa9 italicise antibiogram 2023-02-17 09:42:51 +01:00
dr. M.S. (Matthijs) Berends ef716f6ee3 doc fix 2023-02-15 17:16:40 +01:00
dr. M.S. (Matthijs) Berends 3396236eef unit test fixes 2023-02-13 16:56:25 +01:00
dr. M.S. (Matthijs) Berends b6d2b1398d Fix for `antibiogram()` in R <=3.4 2023-02-13 10:21:43 +01:00
dr. M.S. (Matthijs) Berends 45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
dr. M.S. (Matthijs) Berends 68abb00c59 add include_screening to `as.sir()` 2023-02-12 15:09:54 +01:00
dr. M.S. (Matthijs) Berends b146de6d7f fix for bind_rows2, added 4 langs 2023-02-11 21:57:12 +01:00
dr. M.S. (Matthijs) Berends 03294c7901 fix for Salmonella group A, unit tests 2023-02-10 16:47:25 +01:00
dr. M.S. (Matthijs) Berends bc434db835 bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
dr. M.S. (Matthijs) Berends 70a7ba0206 fix first isolate 2023-02-10 13:13:17 +01:00
dr. M.S. (Matthijs) Berends 1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
dr. M.S. (Matthijs) Berends aa48c6bf53 pm fixes 2023-02-08 16:51:41 +01:00
dr. M.S. (Matthijs) Berends f7dd890b79 fixes 2023-02-06 12:38:52 +01:00
dr. M.S. (Matthijs) Berends 9e99e66f01 use dplyr where available, new `antibiogram()` for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
dr. M.S. (Matthijs) Berends 4b133d4c96 unit tests 2023-01-30 17:24:03 +01:00
dr. M.S. (Matthijs) Berends 830c67f1bf documentation, unit tests 2023-01-24 10:20:27 +01:00
dr. M.S. (Matthijs) Berends eef00069fd add all options to documentation 2023-01-23 20:07:57 +01:00
dr. M.S. (Matthijs) Berends 19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends 98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends 593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
dr. M.S. (Matthijs) Berends b94bc6c67b adding mo fixes 2023-01-14 19:50:25 +01:00
dr. M.S. (Matthijs) Berends ca79068604 Fix for adding MO's 2023-01-14 17:10:10 +01:00
dr. M.S. (Matthijs) Berends 33f269e2f4 contrib update 2023-01-12 23:16:05 +01:00
dr. M.S. (Matthijs) Berends 1029aa2fdc algorithm improvement 2023-01-07 14:53:14 +01:00
dr. M.S. (Matthijs) Berends 08fe5a88c0 documentation 2023-01-07 01:54:46 +01:00
dr. M.S. (Matthijs) Berends 2375bfdcb5 documentation 2023-01-07 01:51:19 +01:00
dr. M.S. (Matthijs) Berends 84ed8c32bb documentation 2023-01-06 19:21:04 +01:00