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Commit Graph

522 Commits

Author SHA1 Message Date
29dbfa2f49 (v1.6.0.9021) join functions update 2021-05-12 18:15:03 +02:00
5679ccdaf9 (v1.6.0.9017) extra system codes 2021-05-04 12:47:33 +02:00
12a8d59869 (v1.6.0.9015) italicise_taxonomy 2021-05-03 10:47:32 +02:00
a9fd4aa49f (v1.6.0.9013) website update 2021-04-29 17:16:30 +02:00
5e06b20d43 (v1.6.0.9012) unit tests 2021-04-27 11:28:17 +02:00
c5fff1c95c (v1.6.0.9011) unit tests 2021-04-27 10:27:13 +02:00
93683a4ae2 (v1.6.0.9010) big first_isolate() update 2021-04-26 23:57:37 +02:00
5f9e7bd3ee (v1.6.0.9009) key_antibiotics update 2021-04-23 16:13:26 +02:00
70b803dbb6 (v1.6.0.9008) unlike, bugfix for col_mo naming 2021-04-23 09:59:36 +02:00
c6289c3fc3 (v1.6.0.9007) documentation custom eucast rules, progress bar as.mo 2021-04-20 10:46:17 +02:00
de66eccf43 (v1.6.0.9006) eucast rules fix for Ochrobactrum anthropi 2021-04-16 14:59:57 +02:00
00d3e437a8 (v1.6.0.9003) like() fix 2021-04-16 11:41:05 +02:00
6ff5448192 (v1.6.0.9001) support Inf for episodes 2021-04-12 12:35:13 +02:00
7a3139f7cc (v1.6.0.9000) custom EUCAST rules 2021-04-07 08:37:42 +02:00
551f99dc8f v1.6.0 2021-03-15 07:23:21 +01:00
4e0a9533ad (v1.5.0.9041) SNOMED update 2021-03-11 21:42:30 +01:00
8d6ceb6a15 (v1.5.0.9040) removal of isolate_identifier 2021-03-08 09:44:17 +01:00
a7c9b4c295 (v1.5.0.9039) handle first isolates for missing antibiograms 2021-03-08 02:38:32 +01:00
450bbe5fb7 (v1.5.0.9034) unit test fix 2021-03-07 21:16:45 +01:00
850c123de7 (v1.5.0.9032) All group generics for MICs 2021-03-07 13:52:39 +01:00
91dd755cac (v1.5.0.9031) math processing of MICs 2021-03-05 15:36:39 +01:00
0e0e3c4ffa (v1.5.0.9029) added missing families and orders 2021-03-05 01:31:46 +01:00
ddf88345f1 (v1.5.0.9028) Updated taxonomy until March 2021 2021-03-04 23:28:32 +01:00
41f94cde97 (v1.5.0.9027) website update 2021-02-26 12:11:29 +01:00
1737d56ae4 (v1.5.0.9026) vignette update, support for GISA 2021-02-25 12:31:12 +01:00
a673407904 (v1.5.0.9025) big plot and ggplot generics update 2021-02-25 10:33:08 +01:00
5ef8cb41a7 (v1.5.0.9021) improve speed of %like% 2021-02-21 20:15:09 +01:00
601ea7377c (v1.5.0.9019) use functions without loading AMR pkg 2021-02-17 10:58:13 +01:00
4a84894f79 (v1.5.0.9016) only_rsi_columns update, documentation 2021-02-08 14:18:42 +01:00
8fda473e49 (v1.5.0.9015) unit test fix, grouped first isolates 2021-02-04 16:48:16 +01:00
2eca8c3f01 (v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement 2021-02-02 23:57:35 +01:00
20d638c193 (v1.5.0.9013) updated tibble printing colours 2021-01-28 16:09:30 +01:00
331c1f6508 (v1.5.0.9012) ampc_cephalosporin_resistance for I 2021-01-25 21:58:00 +01:00
24eb4453db (v1.5.0.9011) small dosage update 2021-01-24 23:27:11 +01:00
286eaa9699 (v1.5.0.9010) MDRO vignette update, get_episode for < day 2021-01-24 14:48:56 +01:00
1a88caa119 (v1.5.0.9009) unit test fixes 2021-01-22 10:55:07 +01:00
1ba44776a1 (v1.5.0.9008) Internal data sets to pkg, speed for auto col determination 2021-01-22 10:20:41 +01:00
4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
e699de955c (v1.5.0.9004) custom MDRO guideline 2021-01-17 00:26:48 +01:00
6745f3fb17 (v1.5.0.9002) doc update 2021-01-14 15:51:41 +01:00
bc00470dca (v1.5.0.9001) more informative argument errors 2021-01-14 14:41:44 +01:00
d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
3b84b8be75 v1.5.0 2021-01-06 11:16:17 +01:00
c9de74c81a (v1.4.0.9059) ab class selector fix 2021-01-04 12:29:25 +01:00
d3f007bf65 (v1.4.0.9053) unit test old R versions 2020-12-29 21:23:01 +01:00
526f8afb08 (v1.4.0.9052) replaced all sapply's with type-safe vapply's 2020-12-28 22:24:33 +01:00
ccf13dd6c0 (v1.4.0.9051) ab class 2020-12-27 23:19:41 +01:00
afc325c314 (v1.4.0.9050) ab selectors base R 2020-12-27 20:32:40 +01:00
ed198916bf (v1.4.0.9048) AmpC de-repressed cephalo-resistant mutants 2020-12-27 14:23:11 +01:00
acbd0cf7ca (v1.4.0.9046) get_episode 2020-12-27 00:07:00 +01:00
df37584189 (v1.4.0.9044) mo tibble printing, mo_shortname() fix 2020-12-24 23:29:10 +01:00
128ebcfd62 (v1.4.0.9043) documentation update 2020-12-22 00:51:17 +01:00
ee70883246 (v1.4.0.9042) auto dark theme website 2020-12-21 22:46:29 +01:00
81af41da3a (v1.4.0.9041) updates based on review 2020-12-17 16:22:25 +01:00
1faa816090 (v1.4.0.9040) LA-MRSA / CA-MRSA 2020-12-16 16:18:53 +01:00
c8bcecf232 (v1.4.0.9037) random_* functions 2020-12-12 23:17:29 +01:00
c9fc7e8a45 (v1.4.0.9034) MIC printing update 2020-12-09 09:40:50 +01:00
2145f1d1ba (v1.4.0.9033) documentation update 2020-12-08 12:37:25 +01:00
1bdb136b3a (v1.4.0.9032) auto-data guessing for functions 2020-12-07 16:06:42 +01:00
e03b3c96d3 (v1.4.0.9030) as.mo() fix for known lab codes 2020-12-03 16:59:04 +01:00
4c114ff4b4 (v1.4.0.9029) grey background for backticks, like readr pkg 2020-12-01 16:59:57 +01:00
7b42b15c90 (v1.4.0.9026) docu update 2020-11-24 11:47:54 +01:00
b045b571a6 (v1.4.0.9025) is_new_episode() 2020-11-23 21:50:27 +01:00
363218da7e (v1.4.0.9024) is_new_episode() 2020-11-17 16:57:41 +01:00
deefce9520 (v1.4.0.9021) more robust class setting 2020-11-16 16:57:55 +01:00
05fb213a7c (v1.4.0.9020) mo_is_intrinsic_resistant 2020-11-16 11:03:24 +01:00
9666b78ea7 (v1.4.0.9019) documentation update 2020-11-12 11:07:23 +01:00
f2edac3b67 (v1.4.0.9018) reference_data in as.rsi() 2020-11-11 18:54:03 +01:00
01d9522434 (v1.4.0.9017) stringsAsFactors definitions 2020-11-11 16:49:27 +01:00
dd5a0319ef (v1.4.0.9014) bugfix 2020-11-09 15:18:36 +01:00
d3b1d33210 (v1.4.0.9013) is_gram_negative/positive update 2020-11-09 13:07:02 +01:00
423879c034 (v1.4.0.9012) reference_df fix 2020-11-05 01:11:49 +01:00
760d69a3e0 (v1.4.0.9008) like variations 2020-10-26 12:23:03 +01:00
9109b9dd62 (v1.4.0.9005) bugfix 2020-10-21 13:07:23 +02:00
ade9f8bafd (v1.4.0.9004) bugfix 2020-10-21 11:50:43 +02:00
2ef7dfc8a3 (v1.4.0.9003) CoNS update 2020-10-20 21:00:57 +02:00
4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
c04dc852cf (v1.3.0.9039) lifecycle updates, added excess kurtosis 2020-10-04 21:02:16 +02:00
baf510183c (v1.3.0.9038) prefinal 1.4.0 2020-10-04 19:26:43 +02:00
ac1c78c793 (v1.3.0.9036) documentation fix 2020-09-30 10:24:53 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
36ec8b0d81 (v1.3.0.9033) skimr fix 2020-09-28 11:00:59 +02:00
22f6ceb3e4 (v1.3.0.9031) matching score update 2020-09-26 16:51:17 +02:00
050a9a04fb (v1.3.0.9030) matching score update 2020-09-26 16:26:01 +02:00
9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
1d982a82b4 (v1.3.0.9028) eucast fix 2020-09-24 12:38:13 +02:00
c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
d049cce69b (v1.3.0.9023) optimalisation 2020-09-19 11:54:01 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
ab60f613aa (v1.3.0.9020) fix for uncertainty in as.mo() 2020-09-14 19:41:48 +02:00
354c606d6a (v1.3.0.9019) small fix 2020-09-14 14:08:07 +02:00
7b6dd676f7 (v1.3.0.9018) language corrections 2020-09-14 12:21:23 +02:00
3ff871afeb (v1.3.0.9016) mo_uncertainties() overhaul 2020-09-12 08:49:01 +02:00
c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
81af0b001c (v1.3.0.9009) documentation update 2020-08-26 16:13:40 +02:00
9b8db57c65 (v1.3.0.9008) also tibble printing for ab 2020-08-26 15:34:12 +02:00
5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00
c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
dab017a50f (v1.3.0.9004) data sets, as.disk() improvement 2020-08-16 21:38:42 +02:00