 dr. M.S. (Matthijs) Berends
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286eaa9699
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(v1.5.0.9010) MDRO vignette update, get_episode for < day
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2021-01-24 14:48:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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4eab095306
|
(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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d014955ce0
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(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
|
2021-01-12 22:08:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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3b84b8be75
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v1.5.0
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2021-01-06 11:16:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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d3f007bf65
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(v1.4.0.9053) unit test old R versions
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2020-12-29 21:23:01 +01:00 |
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dr. M.S. (Matthijs) Berends
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afc325c314
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(v1.4.0.9050) ab selectors base R
|
2020-12-27 20:32:40 +01:00 |
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dr. M.S. (Matthijs) Berends
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8b52f9b1be
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(v1.4.0.9047) unit tests
|
2020-12-27 00:30:28 +01:00 |
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dr. M.S. (Matthijs) Berends
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acbd0cf7ca
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(v1.4.0.9046) get_episode
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2020-12-27 00:07:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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df37584189
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(v1.4.0.9044) mo tibble printing, mo_shortname() fix
|
2020-12-24 23:29:10 +01:00 |
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dr. M.S. (Matthijs) Berends
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128ebcfd62
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(v1.4.0.9043) documentation update
|
2020-12-22 00:51:17 +01:00 |
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dr. M.S. (Matthijs) Berends
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81af41da3a
|
(v1.4.0.9041) updates based on review
|
2020-12-17 16:22:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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1faa816090
|
(v1.4.0.9040) LA-MRSA / CA-MRSA
|
2020-12-16 16:18:53 +01:00 |
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dr. M.S. (Matthijs) Berends
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2edd3339db
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(v1.4.0.9036) more unit tests
|
2020-12-11 12:17:23 +01:00 |
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dr. M.S. (Matthijs) Berends
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e03b3c96d3
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(v1.4.0.9030) as.mo() fix for known lab codes
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2020-12-03 16:59:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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deefce9520
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(v1.4.0.9021) more robust class setting
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2020-11-16 16:57:55 +01:00 |
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dr. M.S. (Matthijs) Berends
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05fb213a7c
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(v1.4.0.9020) mo_is_intrinsic_resistant
|
2020-11-16 11:03:24 +01:00 |
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dr. M.S. (Matthijs) Berends
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01d9522434
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(v1.4.0.9017) stringsAsFactors definitions
|
2020-11-11 16:49:27 +01:00 |
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dr. M.S. (Matthijs) Berends
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15c732703d
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(v1.4.0.9015) bugfix
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2020-11-10 16:35:56 +01:00 |
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dr. M.S. (Matthijs) Berends
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dd5a0319ef
|
(v1.4.0.9014) bugfix
|
2020-11-09 15:18:36 +01:00 |
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dr. M.S. (Matthijs) Berends
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d3b1d33210
|
(v1.4.0.9013) is_gram_negative/positive update
|
2020-11-09 13:07:02 +01:00 |
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dr. M.S. (Matthijs) Berends
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423879c034
|
(v1.4.0.9012) reference_df fix
|
2020-11-05 01:11:49 +01:00 |
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dr. M.S. (Matthijs) Berends
|
5a607abb36
|
(v1.4.0.9011) message formatting
|
2020-10-27 15:56:51 +01:00 |
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dr. M.S. (Matthijs) Berends
|
3d096d96c2
|
(v1.4.0.9009) bugfix for older R version
|
2020-10-26 15:53:31 +01:00 |
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dr. M.S. (Matthijs) Berends
|
760d69a3e0
|
(v1.4.0.9008) like variations
|
2020-10-26 12:23:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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2ef7dfc8a3
|
(v1.4.0.9003) CoNS update
|
2020-10-20 21:00:57 +02:00 |
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dr. M.S. (Matthijs) Berends
|
ddae8085e1
|
(v1.4.0.9002) bugfix
|
2020-10-19 20:44:45 +02:00 |
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dr. M.S. (Matthijs) Berends
|
4e9ccb4435
|
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
|
2020-10-19 17:09:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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28e77680c5
|
(v1.4.0) matching score update
|
2020-10-08 11:16:03 +02:00 |
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dr. M.S. (Matthijs) Berends
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baf510183c
|
(v1.3.0.9038) prefinal 1.4.0
|
2020-10-04 19:26:43 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e0374af29
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(v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup
|
2020-09-29 23:35:46 +02:00 |
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dr. M.S. (Matthijs) Berends
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36ec8b0d81
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(v1.3.0.9033) skimr fix
|
2020-09-28 11:00:59 +02:00 |
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dr. M.S. (Matthijs) Berends
|
519aada54f
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(v1.3.0.9032) support skimr
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2020-09-28 01:08:55 +02:00 |
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dr. M.S. (Matthijs) Berends
|
22f6ceb3e4
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(v1.3.0.9031) matching score update
|
2020-09-26 16:51:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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050a9a04fb
|
(v1.3.0.9030) matching score update
|
2020-09-26 16:26:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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9667c2994f
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(v1.3.0.9029) eucast rules fix, unique()
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2020-09-25 14:44:50 +02:00 |
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dr. M.S. (Matthijs) Berends
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c19095a3d5
|
(v1.3.0.9026) eucast expert rules 3.2
|
2020-09-24 00:30:11 +02:00 |
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dr. M.S. (Matthijs) Berends
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d049cce69b
|
(v1.3.0.9023) optimalisation
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2020-09-19 11:54:01 +02:00 |
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dr. M.S. (Matthijs) Berends
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4e40e42011
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(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
|
2020-09-18 16:05:53 +02:00 |
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dr. M.S. (Matthijs) Berends
|
89401ede9f
|
(v1.3.0.9021) typo
|
2020-09-14 20:41:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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ab60f613aa
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(v1.3.0.9020) fix for uncertainty in as.mo()
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2020-09-14 19:41:48 +02:00 |
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dr. M.S. (Matthijs) Berends
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354c606d6a
|
(v1.3.0.9019) small fix
|
2020-09-14 14:08:07 +02:00 |
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dr. M.S. (Matthijs) Berends
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7b6dd676f7
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(v1.3.0.9018) language corrections
|
2020-09-14 12:21:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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0f6760d427
|
(v1.3.0.9017) small fix
|
2020-09-12 13:54:21 +02:00 |
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dr. M.S. (Matthijs) Berends
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3ff871afeb
|
(v1.3.0.9016) mo_uncertainties() overhaul
|
2020-09-12 08:49:01 +02:00 |
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dr. M.S. (Matthijs) Berends
|
68e9cb78e9
|
(v1.3.0.9015) as.mo() speedup for valid taxonomic names
|
2020-09-03 20:59:21 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c4b87fe241
|
(v1.3.0.9014) as.mo() speed improvement
|
2020-09-03 12:31:48 +02:00 |
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dr. M.S. (Matthijs) Berends
|
74a172ef55
|
(v1.3.0.9010) S3 extensions without dependencies
|
2020-08-28 21:55:47 +02:00 |
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dr. M.S. (Matthijs) Berends
|
5e45fdcf2a
|
(v1.3.0.9007) tibble printing
|
2020-08-26 11:33:54 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c8c8bb4e3a
|
(v1.3.0.9006) website update
|
2020-08-21 11:40:13 +02:00 |
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dr. M.S. (Matthijs) Berends
|
08d62bb5d5
|
(v1.3.0.9002) intrinsic_resistant data set
|
2020-08-14 13:36:10 +02:00 |
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dr. M.S. (Matthijs) Berends
|
ab2b359e6b
|
(v1.2.0.9036) unit test fix
|
2020-07-22 12:29:51 +02:00 |
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dr. M.S. (Matthijs) Berends
|
09fba38ea6
|
(v1.2.0.9035) as.mo() speed improvement
|
2020-07-22 10:24:23 +02:00 |
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dr. M.S. (Matthijs) Berends
|
6ab468362d
|
(v1.2.0.9034) code cleaning
|
2020-07-13 09:17:24 +02:00 |
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dr. M.S. (Matthijs) Berends
|
76fc8e1b14
|
(v1.2.0.9026) move to github
|
2020-07-08 14:48:06 +02:00 |
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dr. M.S. (Matthijs) Berends
|
93a158aebd
|
(v1.2.0.9011) mo_domain(), improved error handling
|
2020-06-22 11:18:40 +02:00 |
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dr. M.S. (Matthijs) Berends
|
ac12392da3
|
(v1.2.0.9008) ab_class improvement
|
2020-06-17 15:14:37 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b44e2c9202
|
v1.2.0
|
2020-05-28 16:48:55 +02:00 |
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dr. M.S. (Matthijs) Berends
|
86d44054f0
|
(v1.1.0.9020) updated taxonomy
|
2020-05-27 16:37:49 +02:00 |
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dr. M.S. (Matthijs) Berends
|
cb1814f5ff
|
(v1.1.0.9013) lose dependencies
|
2020-05-19 13:18:01 +02:00 |
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dr. M.S. (Matthijs) Berends
|
19703eb5d3
|
(v1.1.0.9012) lose dependencies
|
2020-05-19 12:08:49 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7f3da74b17
|
(v1.1.0.9004) lose dependencies
|
2020-05-16 13:05:47 +02:00 |
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dr. M.S. (Matthijs) Berends
|
b040185269
|
(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
|
2020-04-29 14:33:44 +02:00 |
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dr. M.S. (Matthijs) Berends
|
cde65141d9
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(v1.0.1.9007) small bugfix
|
2020-04-14 15:10:09 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7a6f819232
|
(v1.0.1.9006) added generic CLSI rules
|
2020-04-14 14:12:31 +02:00 |
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dr. M.S. (Matthijs) Berends
|
d1cb7d3b6f
|
(v1.0.1.9005) as.mo() improvements
|
2020-04-13 21:09:56 +02:00 |
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dr. M.S. (Matthijs) Berends
|
219cff403f
|
(v1.0.1.9004) Support dplyr 1.0.0
|
2020-03-14 14:05:43 +01:00 |
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dr. M.S. (Matthijs) Berends
|
9b8b02960e
|
(v0.9.0.9023) EUCAST 2020 guidelines
|
2020-02-14 19:54:13 +01:00 |
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dr. M.S. (Matthijs) Berends
|
c7a76ba713
|
(v0.9.0.9020) as.mo() improvement
|
2020-02-09 22:04:29 +01:00 |
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dr. M.S. (Matthijs) Berends
|
f152ab9a48
|
(v0.9.0.9018) Remove mo_history
|
2020-01-31 23:27:38 +01:00 |
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dr. M.S. (Matthijs) Berends
|
a13c62e6e8
|
(v0.9.0.9016) Support SNOMED codes
|
2020-01-27 19:14:23 +01:00 |
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dr. M.S. (Matthijs) Berends
|
449d9bde35
|
(v0.9.0.9012) Support for LOINC codes
|
2020-01-26 20:20:00 +01:00 |
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dr. M.S. (Matthijs) Berends
|
ced1a7b7fa
|
(v0.9.0.9008) Happy new year! Add lifecycles
|
2020-01-05 17:22:09 +01:00 |
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dr. M.S. (Matthijs) Berends
|
ba3ce77f02
|
(v0.9.0.9005) as.mo for G. species
|
2019-12-21 10:56:06 +01:00 |
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dr. M.S. (Matthijs) Berends
|
2db2a2458a
|
(v0.9.0.9003) as.mo() speedup for fullnames
|
2019-12-20 15:05:58 +01:00 |
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dr. M.S. (Matthijs) Berends
|
c5f00f4a9f
|
(v0.8.0.9036) complete documentation rewrite
|
2019-11-28 22:32:17 +01:00 |
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dr. M.S. (Matthijs) Berends
|
e53cc4990c
|
(v0.8.0.9034) add cid to antivirals
|
2019-11-23 12:39:57 +01:00 |
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dr. M.S. (Matthijs) Berends
|
267320f15f
|
(v0.8.0.9033) antivirals data set, cleanup
|
2019-11-18 12:10:47 +01:00 |
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dr. M.S. (Matthijs) Berends
|
67f3f4387b
|
(v0.8.0.9032) fix regex error
|
2019-11-15 16:50:46 +01:00 |
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dr. M.S. (Matthijs) Berends
|
09e2730b53
|
(v0.8.0.9031) as.mo() improvements
|
2019-11-15 15:25:03 +01:00 |
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dr. M.S. (Matthijs) Berends
|
29e448883d
|
(v0.8.0.9008) new verbose mode for MDROs
|
2019-11-03 22:24:42 +01:00 |
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dr. M.S. (Matthijs) Berends
|
412077a6f2
|
(v0.8.0.9005) fix unit tests
|
2019-10-26 22:21:26 +02:00 |
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dr. M.S. (Matthijs) Berends
|
3e5ab53209
|
(v0.8.0.9002) eucast_rules() fix for S. maltophilia
|
2019-10-23 14:48:25 +02:00 |
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dr. M.S. (Matthijs) Berends
|
00cdb498a0
|
(v0.7.1.9102) lintr
|
2019-10-11 17:21:02 +02:00 |
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dr. M.S. (Matthijs) Berends
|
c8f6b97847
|
(v0.7.1.9100) bug_drug speed, MIC levels
|
2019-10-08 22:21:33 +02:00 |
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dr. M.S. (Matthijs) Berends
|
8bc4081b03
|
(v0.7.1.9092) as.ab() improvements
|
2019-10-04 15:36:12 +02:00 |
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dr. M.S. (Matthijs) Berends
|
edb599ae0b
|
(v0.7.1.9091) percentage from clean pkg
|
2019-09-30 16:45:36 +02:00 |
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dr. M.S. (Matthijs) Berends
|
38336d7408
|
(v0.7.1.9086) small fix
|
2019-09-23 23:00:18 +02:00 |
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dr. M.S. (Matthijs) Berends
|
ad5f211a8f
|
(v0.7.1.9085) Salmonella fix
|
2019-09-23 21:24:37 +02:00 |
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dr. M.S. (Matthijs) Berends
|
76dc948067
|
(v0.7.1.9084) CI fix
|
2019-09-23 20:55:54 +02:00 |
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dr. M.S. (Matthijs) Berends
|
8ce252fbc5
|
(v0.7.1.9083) LIS code improvement
|
2019-09-23 17:32:05 +02:00 |
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dr. M.S. (Matthijs) Berends
|
64d9829030
|
(v0.7.1.9081) bug_drug fixes
|
2019-09-23 13:53:50 +02:00 |
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dr. M.S. (Matthijs) Berends
|
57b0bd92a0
|
(v0.7.1.9079) small fixes
|
2019-09-22 12:41:45 +02:00 |
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dr. M.S. (Matthijs) Berends
|
46b61e9a70
|
(v0.7.1.9078) unit tests
|
2019-09-20 14:50:02 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
40e6b3e8f6
|
(v0.7.1.9077) mo codes fix
|
2019-09-20 14:18:29 +02:00 |
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dr. M.S. (Matthijs) Berends
|
3596adb295
|
(v0.7.1.9076) mo codes
|
2019-09-20 12:33:05 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
e2aa4f996b
|
(v0.7.1.9075) new microorganism codes
|
2019-09-18 15:46:09 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
f553a08a7b
|
(v0.7.1.9074) CI updates
|
2019-09-16 12:00:56 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
398c5bdc4f
|
(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
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dr. M.S. (Matthijs) Berends
|
cd178ee569
|
(v0.7.1.9072) key_antibiotics() for foreign systems
|
2019-09-12 15:08:53 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
c7be72f0ce
|
(v0.7.1.9069) documentation update
|
2019-09-01 13:16:57 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7a6fce4eb8
|
(v0.7.1.9062) mo/ab assignment improvements
|
2019-08-26 16:02:03 +02:00 |
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dr. M.S. (Matthijs) Berends
|
7c069145ac
|
(v0.7.1.9058) as.mo() improvement
|
2019-08-20 11:40:54 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
920212e815
|
(v0.7.1.9056) mo and ab subsetting
|
2019-08-14 14:57:06 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
7108454ba5
|
(v0.7.1.9055) algorithm improvements
|
2019-08-13 16:15:08 +02:00 |
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dr. M.S. (Matthijs) Berends
|
5f2733349e
|
(v0.7.1.9038) mo algorithm inprovements
|
2019-08-12 19:07:15 +02:00 |
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dr. M.S. (Matthijs) Berends
|
bd252a2984
|
(v0.7.1.9036) preserve ab/mo classes in subsetting
|
2019-08-12 14:48:09 +02:00 |
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dr. M.S. (Matthijs) Berends
|
1d423cca89
|
(v0.7.1.9035) cephalosporins and unit tests
|
2019-08-11 19:07:26 +02:00 |
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dr. M.S. (Matthijs) Berends
|
6a349bf757
|
(v0.7.1.9032) eucast_rules() improvements
|
2019-08-09 14:28:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
1ce4b72dd2
|
(v0.7.1.9031) include_unknown for first_isolate()
|
2019-08-08 22:39:42 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
90c874025a
|
(v0.7.1.9027) tibble printing
|
2019-08-07 15:37:39 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
3a1f960f89
|
(v0.7.1.9024) eucast_rules() fix, new MOs
|
2019-08-06 14:39:22 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
85b62aaf8f
|
(v0.7.1.9023) wrong percentage in as.mo()
|
2019-08-04 17:41:12 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b7e2d7b9b8
|
(v0.7.1.9016) deps
|
2019-07-29 17:34:57 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
b15d59cf03
|
(v0.7.1.9009) note for WHOCC
|
2019-07-09 11:22:46 +02:00 |
|
dr. M.S. (Matthijs) Berends
|
4ff20af123
|
(v0.7.1.9006) new rsi calculations, atc class removal
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2019-07-02 16:48:52 +02:00 |
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dr. M.S. (Matthijs) Berends
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156d550895
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(v0.7.1.9005) new rsi calculations, atc class removal
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2019-07-01 14:03:15 +02:00 |
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dr. M.S. (Matthijs) Berends
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65c6702b21
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(v0.7.1.9004) atc class removal
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2019-06-27 11:57:45 +02:00 |
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dr. M.S. (Matthijs) Berends
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453c159eac
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0.7.1
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2019-06-23 14:49:17 +02:00 |
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dr. M.S. (Matthijs) Berends
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c9156c004a
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(v0.7.0.9013) mo_synonym fix
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2019-06-22 14:49:12 +02:00 |
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dr. M.S. (Matthijs) Berends
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699e87ab4a
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(v0.7.0.9007) renamed notes fix
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2019-06-12 16:08:20 +02:00 |
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dr. M.S. (Matthijs) Berends
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ec48f1d83b
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(v0.7.0.9003) scale fix
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2019-06-08 23:50:06 +02:00 |
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dr. M.S. (Matthijs) Berends
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f50d3a5ba1
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(v0.7.0.9002) scale fix
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2019-06-08 15:00:28 +02:00 |
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dr. M.S. (Matthijs) Berends
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f02679fb63
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(v0.7.0.9001) new pathovars, small fixes
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2019-06-07 22:47:37 +02:00 |
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dr. M.S. (Matthijs) Berends
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270aa0dd33
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v0.7.0
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2019-06-03 17:45:22 +02:00 |
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dr. M.S. (Matthijs) Berends
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bd73988f15
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(v0.6.1.9053) prerelease fixes
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2019-06-02 19:23:19 +02:00 |
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dr. M.S. (Matthijs) Berends
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2667fff8a7
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(v0.6.1.9050) support staged install
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2019-06-01 20:40:49 +02:00 |
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dr. M.S. (Matthijs) Berends
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27380fa021
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fixes for microorganisms.codes
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2019-05-28 16:50:40 +02:00 |
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dr. M.S. (Matthijs) Berends
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4ca00e1868
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speed improvement eucast_rules(), support more old MO codes
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2019-05-20 12:00:18 +02:00 |
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dr. M.S. (Matthijs) Berends
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4c3cf85a65
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ab_info, other bug fixes
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2019-05-16 21:20:00 +02:00 |
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dr. M.S. (Matthijs) Berends
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0dc0715dc6
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CI tests
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2019-05-13 12:21:57 +02:00 |
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dr. M.S. (Matthijs) Berends
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68cc7ef0d0
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new antibiotics
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2019-05-10 16:44:59 +02:00 |
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dr. M.S. (Matthijs) Berends
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51fdc5d6cc
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self-learning off
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2019-04-06 09:38:23 +02:00 |
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dr. M.S. (Matthijs) Berends
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fbc9191b13
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new EUCAST rules algorithm
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2019-04-05 18:47:39 +02:00 |
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dr. M.S. (Matthijs) Berends
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b25f2d6213
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v0.6.1
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2019-03-28 21:33:28 +01:00 |
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dr. M.S. (Matthijs) Berends
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29f444543d
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added Becker 2019
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2019-03-26 14:24:03 +01:00 |
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dr. M.S. (Matthijs) Berends
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c6a12266e7
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DSMZ data
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2019-03-18 14:29:41 +01:00 |
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dr. M.S. (Matthijs) Berends
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e18a1f1f17
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as.mo improvement
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2019-03-15 17:36:42 +01:00 |
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dr. M.S. (Matthijs) Berends
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fdffc2791b
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memory for as.mo()
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2019-03-15 13:57:25 +01:00 |
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dr. M.S. (Matthijs) Berends
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504a042fba
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uncertainty levels, new WHONET codes
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2019-03-12 12:19:27 +01:00 |
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dr. M.S. (Matthijs) Berends
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b319b89750
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WHONET fix
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2019-03-09 08:21:00 +01:00 |
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dr. M.S. (Matthijs) Berends
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0c0c6e289b
|
small as.mo fix
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2019-03-06 14:39:02 +01:00 |
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dr. M.S. (Matthijs) Berends
|
74e0ae21fd
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con WHONET, filter ab class
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2019-03-05 22:47:42 +01:00 |
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dr. M.S. (Matthijs) Berends
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e835525cf6
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unknown codes, rsi fix
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2019-03-02 22:47:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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c5efb272fd
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mo_source improvement
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2019-03-01 09:34:04 +01:00 |
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dr. M.S. (Matthijs) Berends
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2565b60024
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rlang dependency, new fungi
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2019-02-28 13:56:28 +01:00 |
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dr. M.S. (Matthijs) Berends
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cf3bdb54c7
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global var fix
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2019-02-27 19:02:47 +01:00 |
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dr. M.S. (Matthijs) Berends
|
642f6571fe
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as.mo fix
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2019-02-27 14:22:07 +01:00 |
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dr. M.S. (Matthijs) Berends
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54162522bd
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age_groups fix
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2019-02-27 11:36:12 +01:00 |
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dr. M.S. (Matthijs) Berends
|
f9ded23023
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as.mo improvement
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2019-02-26 12:33:26 +01:00 |
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dr. M.S. (Matthijs) Berends
|
f25a4b3679
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as.mo improvements
|
2019-02-25 16:07:21 +01:00 |