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67521394f6
|
more unit tests
|
2018-10-09 15:41:44 +02:00 |
|
|
|
95c9fdc552
|
CRAN fixes for release 0.4.0
https://cran.r-project.org/web/checks/check_results_AMR.html
|
2018-10-09 13:53:33 +02:00 |
|
|
|
6d761436f7
|
benchmarks on readme and speed improvement for direct mo codes
|
2018-10-01 16:26:02 +02:00 |
|
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|
ed17db0263
|
renamed year columns to ref
|
2018-10-01 14:44:40 +02:00 |
|
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3119a221e5
|
authors from ITIS, diff for freq
|
2018-10-01 11:39:43 +02:00 |
|
|
|
92c9cc2608
|
diff for freq, fix for mo_shortname
|
2018-09-29 21:54:32 +02:00 |
|
|
|
a6aa9e95fb
|
completed old taxonomic names
|
2018-09-28 20:13:13 +02:00 |
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|
768fe17324
|
removed clipboard functions as it violated CRAN policies
|
2018-09-28 16:05:18 +02:00 |
|
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|
2b0080995e
|
speed improvement for as.mo, more old taxonomic names
|
2018-09-27 23:23:48 +02:00 |
|
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|
450992baea
|
new: 1680 old taxonomic names
|
2018-09-25 16:44:40 +02:00 |
|
|
|
9c566585b0
|
first inclusion of ITIS data
|
2018-09-24 23:33:29 +02:00 |
|
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|
5d80cef338
|
added taxonomic data from ITIS
|
2018-09-17 20:53:32 +02:00 |
|
|
|
7680e4edd8
|
add shortest and longest to freq for characters
|
2018-09-17 09:42:09 +02:00 |
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|
db14781593
|
add labels_rsi_count
|
2018-09-16 22:11:17 +02:00 |
|
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b792a2754e
|
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
|
2018-09-16 16:43:29 +02:00 |
|
|
|
b0ca49d68d
|
small improvement for is.rsi.eligible, more unit tests
|
2018-09-14 11:54:01 +02:00 |
|
|
|
cf5711fb0b
|
algorithm improvement
|
2018-09-14 10:31:21 +02:00 |
|
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|
d049ec9e69
|
ggplot2_rsi fix
|
2018-09-13 14:48:34 +02:00 |
|
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|
cb0d74a4f0
|
support for French and Italian, added quote to freq
|
2018-09-10 15:45:25 +02:00 |
|
|
|
b83e6a9380
|
algoritm improvement, removed all Catabacter except for C. hongkongensis
|
2018-09-10 11:40:54 +02:00 |
|
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|
4816419f0c
|
AI improvements for microorganisms
|
2018-09-09 12:11:44 +02:00 |
|
|
|
936198372e
|
translate CoNS
|
2018-09-08 16:24:12 +02:00 |
|
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|
26f5be0033
|
support for portuguese, language determination based on system
|
2018-09-08 16:06:47 +02:00 |
|
|
|
c5073f2fd1
|
small fix for microorganisms data set
|
2018-09-06 16:50:03 +02:00 |
|
|
|
de36b0be23
|
fix for empty values in mo_property
|
2018-09-05 12:21:27 +02:00 |
|
|
|
e39a9a8b05
|
added mo_shortname
|
2018-09-05 10:51:46 +02:00 |
|
|
|
790bd1622d
|
added vanA to vanE positive Enterococci
|
2018-09-05 09:49:19 +02:00 |
|
|
|
b388e3fee7
|
Support for German and Spanish microorganism properties, cleanup
|
2018-09-04 11:33:30 +02:00 |
|
|
|
e25dd0e282
|
fix for joins
|
2018-09-03 10:04:49 +02:00 |
|
|
|
75fe4d401f
|
new MOs, cleanup
|
2018-09-01 21:19:46 +02:00 |
|
|
|
5965d3c794
|
replaced bactid by mo
|
2018-08-31 13:36:19 +02:00 |
|
|
|
98ff131680
|
support for older versions of ggplot2
|
2018-08-29 16:39:28 +02:00 |
|
|
|
d654444c8e
|
re added nrow
|
2018-08-29 16:35:32 +02:00 |
|
|
|
d9e68e0a50
|
ggplot_rsi example update, more unit tests
|
2018-08-29 16:25:57 +02:00 |
|
|
|
029157b3be
|
163 new trade names, added ab_tradenames
|
2018-08-29 12:27:37 +02:00 |
|
|
|
972fc4f6c7
|
ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
|
2018-08-28 13:51:13 +02:00 |
|
|
|
2acdb1981c
|
atc and bactid functions, readme update
|
2018-08-25 22:01:14 +02:00 |
|
|
|
baaf4cc3e1
|
few extra tests
|
2018-08-24 14:18:38 +02:00 |
|
|
|
a100d07da6
|
removed ratio, better rsi_calc, update for freq
|
2018-08-24 11:08:20 +02:00 |
|
|
|
febd0ca885
|
geom_rsi - any parameter
|
2018-08-23 21:27:15 +02:00 |
|
|
|
da5379c881
|
quasiquotation, alpha for geom_rsi
|
2018-08-23 00:40:36 +02:00 |
|
|
|
3e87c8f409
|
count_* functions
|
2018-08-22 00:02:26 +02:00 |
|
|
|
59ce1eb1b1
|
ggplot_rsi improvements
|
2018-08-13 16:42:37 +02:00 |
|
|
|
dba06c3295
|
abname improvement, small fixes
|
2018-08-13 11:00:53 +02:00 |
|
|
|
ce2cdb9309
|
support groups for portion_df, update README
|
2018-08-12 22:34:03 +02:00 |
|
|
|
e5d32cafe0
|
new unit tests for ggplot, small fixes
|
2018-08-12 17:44:06 +02:00 |
|
|
|
1ba7d883fe
|
new ggplot enhancement
|
2018-08-11 21:30:00 +02:00 |
|
|
|
53fa198e35
|
new portion functions
|
2018-08-10 15:01:05 +02:00 |
|
|
|
ae2433a020
|
rsi family for resistance analysis
|
2018-08-03 14:49:29 +02:00 |
|
|
|
227121af3d
|
add Dialister to microorganisms
|
2018-08-03 11:46:06 +02:00 |
|
|
|
db5a0d32a5
|
typos of Becker algorithm
|
2018-08-03 10:58:48 +02:00 |
|
|
|
bd9bcfef78
|
thesis advisors
|
2018-08-03 09:59:39 +02:00 |
|
|
|
6262315527
|
Becker classification
Lancefield classification
Added Lancefield groups to `microorganisms` data set
|
2018-08-02 13:15:45 +02:00 |
|
|
|
edd2dd09dc
|
rsi for freq
|
2018-08-01 22:37:28 +02:00 |
|
|
|
d8f70a74de
|
clipboard error
|
2018-08-01 10:32:24 +02:00 |
|
|
|
a59d0661f7
|
check CMD error
|
2018-08-01 09:45:11 +02:00 |
|
|
|
7c667eb732
|
emph guess_bactid
|
2018-08-01 08:03:31 +02:00 |
|
|
|
211e3bae14
|
remove reshape2 dependency
|
2018-07-30 01:18:40 +02:00 |
|
|
|
510e8f22aa
|
more unit tests
|
2018-07-30 00:57:49 +02:00 |
|
|
|
d0a115d995
|
bactid speed improvement
|
2018-07-30 00:14:06 +02:00 |
|
|
|
826694323b
|
new functions R, RI, SI, S
|
2018-07-29 22:14:51 +02:00 |
|
|
|
8421e3f005
|
more mic classes
|
2018-07-28 10:48:27 +02:00 |
|
|
|
feab1cad6b
|
small fixes
|
2018-07-28 09:34:03 +02:00 |
|
|
|
498e88b5cf
|
improvement for forecasting resistance
|
2018-07-26 16:30:42 +02:00 |
|
|
|
d9e204031d
|
update to septic_patients, speed improvements
|
2018-07-25 14:17:04 +02:00 |
|
|
|
03a3cb397b
|
clipboard update
|
2018-07-23 15:09:19 +02:00 |
|
|
|
8421638b60
|
new class bactid
|
2018-07-23 14:14:03 +02:00 |
|
|
|
9920ac8a5c
|
fix for keyab, more examples
|
2018-07-23 10:35:39 +02:00 |
|
|
|
ad662d7bab
|
new col names for key_antibiotics
|
2018-07-19 15:11:23 +02:00 |
|
|
|
0d64c166f0
|
keyab fixes
|
2018-07-17 19:51:09 +02:00 |
|
|
|
2a4d759fbc
|
check fails
|
2018-07-17 14:48:11 +02:00 |
|
|
|
5cb9c541f8
|
new algorithm key abs
|
2018-07-17 13:02:05 +02:00 |
|
|
|
a5a4354651
|
speed improvements
|
2018-07-17 10:32:26 +02:00 |
|
|
|
715a7630ca
|
support format.freq
|
2018-07-16 16:41:48 +02:00 |
|
|
|
6eaf33baf3
|
speed improvements
|
2018-07-15 22:56:41 +02:00 |
|
|
|
b6655f6454
|
Welcome C++!
|
2018-07-13 17:23:46 +02:00 |
|
|
|
a28289562a
|
remove print function, out of scope
|
2018-07-11 20:12:19 +02:00 |
|
|
|
e3e10c2e88
|
fix for macOS and older tidyr versions
|
2018-07-11 12:34:02 +02:00 |
|
|
|
f63414d519
|
new g.test, extra unit tests
|
2018-07-10 12:27:07 +02:00 |
|
|
|
fc30d3fb13
|
freq: support for table
|
2018-07-09 14:02:58 +02:00 |
|
|
|
14b990d769
|
kurtosis, skewness, start with ML
|
2018-07-08 22:14:55 +02:00 |
|
|
|
34ee0247ac
|
addins and small improvements to microorganisms dataset
|
2018-07-04 17:20:03 +02:00 |
|
|
|
10fce8382c
|
include IQR and MAD in freq
|
2018-07-03 11:30:40 +02:00 |
|
|
|
3d0d21f322
|
rename vector2ratio to ratio
|
2018-07-02 11:14:20 +02:00 |
|
|
|
2ca01e2d8d
|
remove rlang dependency
|
2018-07-01 22:23:34 +02:00 |
|
|
|
3527894b49
|
new g.test() and edited freq()
|
2018-07-01 21:40:37 +02:00 |
|
|
|
f7af8a81da
|
update man page
|
2018-06-29 09:06:47 +02:00 |
|
|
|
6ee713cec1
|
move tbl_parse_guess
|
2018-06-29 08:56:03 +02:00 |
|
|
|
649a8025aa
|
add clipboard functions again
|
2018-06-27 15:54:56 +02:00 |
|
|
|
a9bd5472d0
|
top_freq
|
2018-06-20 14:47:37 +02:00 |
|
|
|
4a027f3c34
|
extra unit tests, add row.names to freq
|
2018-06-19 15:20:14 +02:00 |
|
|
|
bdc860e29c
|
atc_groups
|
2018-06-19 10:05:38 +02:00 |
|
|
|
0a5898b17d
|
fix for printing tibbles, improve guess_bactid
|
2018-06-08 12:06:54 +02:00 |
|
|
|
efdf5a3dc5
|
prevent dplyr:row_number warning
|
2018-05-31 14:19:25 +02:00 |
|
MS Berends
|
7a6d5fb6b7
|
rsi/mic fix
|
2018-05-31 09:02:49 +02:00 |
|
|
|
5593aee19e
|
edit as.rsi algor.
|
2018-05-30 23:02:16 +02:00 |
|
uscloud
|
dcc26dd942
|
Update freq function
|
2018-05-22 16:34:22 +02:00 |
|
MS Berends
|
0d80647d41
|
fix SI and IR
|
2018-05-16 11:19:45 +02:00 |
|
|
|
f05e7178cb
|
added vignette of freq
|
2018-05-09 11:44:46 +02:00 |
|
|
|
25b3346d9a
|
edit methodology of rsi
|
2018-05-03 10:19:02 +02:00 |
|
