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mirror of https://github.com/msberends/AMR.git synced 2024-12-26 18:06:11 +01:00
Commit Graph

184 Commits

Author SHA1 Message Date
ddb23b6e73 (v2.1.1.9071) update veterinary SIR interpretation, add only_fungi 2024-09-19 11:44:56 +02:00
573c0346ed (v2.1.1.9070) fix for mo_current mo (no-verify) 2024-07-19 18:05:49 +02:00
7258a491b9 (v2.1.1.9068) fix for mo_url() and as.mo() for synonyms 2024-07-17 14:29:55 +02:00
640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
2899b3c840 new mo_group_members() 2024-04-19 10:18:21 +02:00
7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
a4e2e25e3f reftbl in plots, speedup for as.sir() and mo_validate 2023-07-10 16:43:46 +02:00
70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
9591688811 documentation update 2023-05-27 10:39:22 +02:00
91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
cabffb22fd anaerobic codes 2023-04-17 11:26:19 +02:00
262598b8d7 support for old rsi arguments 2023-03-11 14:24:34 +01:00
dad25302f2 make rsi work in more cases, documentation update 2023-02-22 14:38:57 +01:00
03294c7901 fix for Salmonella group A, unit tests 2023-02-10 16:47:25 +01:00
bc434db835 bring back antibiogram(), without deps 2023-02-10 16:18:00 +01:00
1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00
9e99e66f01 use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi 2023-02-06 11:57:22 +01:00
19fd0ef121 sort sir history 2023-01-23 15:01:21 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR 2023-01-21 23:47:20 +01:00
593d740b84 documentation, file permissions 2023-01-19 12:54:53 +01:00
ca79068604 Fix for adding MO's 2023-01-14 17:10:10 +01:00
1029aa2fdc algorithm improvement 2023-01-07 14:53:14 +01:00
2375bfdcb5 documentation 2023-01-07 01:51:19 +01:00
84ed8c32bb documentation 2023-01-06 19:21:04 +01:00
86e28bafce add mo_pathogenicity 2023-01-06 13:35:37 +01:00
f619fb683b support new mo codes 2022-12-27 15:16:15 +01:00
6f4bb603ec unit tests 2022-12-20 22:18:50 +01:00
f0a2cdbf5e update mo algorithm 2022-12-20 16:14:04 +01:00
56dad34e68 update prevalence with new phyla 2022-12-09 13:37:08 +01:00
510140fc55 Updated mo_gramstain() to reflect current taxonomy, fixes #83 2022-12-09 10:30:25 +01:00
7ca44fb756 cleanup and new intro logo 2022-11-13 13:44:25 +01:00
9444ed6d1d fix antibiotics error 2022-10-30 21:05:46 +01:00
d40e0ef20b completely updated antibiotics 2022-10-30 14:31:45 +01:00
6ad7857d39 fix missing R breakpoints 2022-10-29 14:15:23 +02:00
85e2fbe4a3 remove warnings from unit tests 2022-10-19 11:47:57 +02:00
43c638d122 add mo_current() 2022-10-10 10:12:08 +02:00
b753b84128 fix for mo type translation 2022-10-06 12:11:51 +02:00
b9342d103e fix documentation 2022-10-06 11:33:30 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0 2022-10-05 09:12:22 +02:00
4d050aef7c styled, unit test fix 2022-08-28 10:31:50 +02:00
303d61b473 new tibble export 2022-08-27 20:49:37 +02:00
952d16de33 new, automated website 2022-08-21 16:37:20 +02:00
3f2f60ab77 language updates 2022-08-19 12:33:14 +02:00
3b2b2be5f8 (v1.8.0.9002) as.rsi() cleanup, more informative warnings 2022-03-02 15:38:55 +01:00
25cef46c59 (v1.8.0) prerelease 1.8.0 2021-12-23 18:56:28 +01:00
56f1ce328a (v1.7.1.9067) Support for Swedish and Russian 2021-12-12 09:42:03 +01:00
77ba4318ea (v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling 2021-12-11 13:41:31 +01:00
e18c49ed93 (v1.7.1.9063) not_intrinsic_resistant 2021-12-09 10:48:25 +01:00
c8698347cb (v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers 2021-11-29 10:38:38 +01:00