|
a2d249962f
|
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
|
2021-08-16 21:54:34 +02:00 |
|
|
4e1efd902c
|
(v1.7.1.9022) rely on vctrs for ab selectors
|
2021-07-23 21:42:11 +02:00 |
|
|
625a6fb304
|
(v1.7.1.9015) removed S3 taxonomic_name again
|
2021-07-07 20:34:05 +02:00 |
|
|
ad10693a1a
|
(v1.7.1.9014) rep() for S3 classes
|
2021-07-06 16:35:14 +02:00 |
|
|
5b5741f681
|
(v1.7.1.9011) subsetting taxonomy fix
|
2021-07-04 15:26:50 +02:00 |
|
|
3bd50710e8
|
(v1.7.1.9010) fix for count_* and proportion_*
|
2021-07-04 12:00:41 +02:00 |
|
|
d04e83f494
|
(v1.7.1.9005) ab class selectors for R-3.0 and R-3.1
|
2021-06-22 12:16:42 +02:00 |
|
|
99be4c7e7e
|
(v1.7.1.9002) ab class selectors update
|
2021-06-14 22:04:04 +02:00 |
|
|
a13fd98e8b
|
(v1.6.0.9063) prepare new release
|
2021-05-24 09:00:11 +02:00 |
|
|
83fec69a03
|
(v1.6.0.9042) translation update
|
2021-05-17 11:26:12 +02:00 |
|
|
29dbfa2f49
|
(v1.6.0.9021) join functions update
|
2021-05-12 18:15:03 +02:00 |
|
|
7a3139f7cc
|
(v1.6.0.9000) custom EUCAST rules
|
2021-04-07 08:37:42 +02:00 |
|
|
4e0a9533ad
|
(v1.5.0.9041) SNOMED update
|
2021-03-11 21:42:30 +01:00 |
|
|
ddf88345f1
|
(v1.5.0.9028) Updated taxonomy until March 2021
|
2021-03-04 23:28:32 +01:00 |
|
|
0fdabff1ba
|
(v1.5.0.9023) mo properties speed improvement
|
2021-02-21 23:19:40 +01:00 |
|
|
062c49fca1
|
(v1.5.0.9022) mo properties speed improvement
|
2021-02-21 22:56:35 +01:00 |
|
|
daa12ced2c
|
(v1.5.0.9020) translation fix
|
2021-02-18 23:23:14 +01:00 |
|
|
4a84894f79
|
(v1.5.0.9016) only_rsi_columns update, documentation
|
2021-02-08 14:18:42 +01:00 |
|
|
8fda473e49
|
(v1.5.0.9015) unit test fix, grouped first isolates
|
2021-02-04 16:48:16 +01:00 |
|
|
2eca8c3f01
|
(v1.5.0.9014) only_rsi_columns, is.rsi.eligible improvement
|
2021-02-02 23:57:35 +01:00 |
|
|
4eab095306
|
(v1.5.0.9006) major documentation update
|
2021-01-18 16:57:56 +01:00 |
|
|
d014955ce0
|
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
|
2021-01-12 22:08:04 +01:00 |
|
|
63a4dda467
|
(v1.4.0.9056) subsetting ab class selectors for base R
|
2021-01-03 23:40:05 +01:00 |
|
|
d3f007bf65
|
(v1.4.0.9053) unit test old R versions
|
2020-12-29 21:23:01 +01:00 |
|
|
afc325c314
|
(v1.4.0.9050) ab selectors base R
|
2020-12-27 20:32:40 +01:00 |
|
|
8b52f9b1be
|
(v1.4.0.9047) unit tests
|
2020-12-27 00:30:28 +01:00 |
|
|
acbd0cf7ca
|
(v1.4.0.9046) get_episode
|
2020-12-27 00:07:00 +01:00 |
|
|
df37584189
|
(v1.4.0.9044) mo tibble printing, mo_shortname() fix
|
2020-12-24 23:29:10 +01:00 |
|
|
128ebcfd62
|
(v1.4.0.9043) documentation update
|
2020-12-22 00:51:17 +01:00 |
|
|
81af41da3a
|
(v1.4.0.9041) updates based on review
|
2020-12-17 16:22:25 +01:00 |
|
|
2145f1d1ba
|
(v1.4.0.9033) documentation update
|
2020-12-08 12:37:25 +01:00 |
|
|
1bdb136b3a
|
(v1.4.0.9032) auto-data guessing for functions
|
2020-12-07 16:06:42 +01:00 |
|
|
fdf29e6c5b
|
(v1.4.0.9031) as.ab() fix
|
2020-12-03 22:30:14 +01:00 |
|
|
e03b3c96d3
|
(v1.4.0.9030) as.mo() fix for known lab codes
|
2020-12-03 16:59:04 +01:00 |
|
|
93428415d0
|
(v1.4.0.9022) small bugfix
|
2020-11-16 20:02:20 +01:00 |
|
|
05fb213a7c
|
(v1.4.0.9020) mo_is_intrinsic_resistant
|
2020-11-16 11:03:24 +01:00 |
|
|
15c732703d
|
(v1.4.0.9015) bugfix
|
2020-11-10 16:35:56 +01:00 |
|
|
dd5a0319ef
|
(v1.4.0.9014) bugfix
|
2020-11-09 15:18:36 +01:00 |
|
|
d3b1d33210
|
(v1.4.0.9013) is_gram_negative/positive update
|
2020-11-09 13:07:02 +01:00 |
|
|
760d69a3e0
|
(v1.4.0.9008) like variations
|
2020-10-26 12:23:03 +01:00 |
|
|
ddae8085e1
|
(v1.4.0.9002) bugfix
|
2020-10-19 20:44:45 +02:00 |
|
|
4e9ccb4435
|
(v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening
|
2020-10-19 17:09:19 +02:00 |
|
|
28e77680c5
|
(v1.4.0) matching score update
|
2020-10-08 11:16:03 +02:00 |
|
|
baf510183c
|
(v1.3.0.9038) prefinal 1.4.0
|
2020-10-04 19:26:43 +02:00 |
|
|
050a9a04fb
|
(v1.3.0.9030) matching score update
|
2020-09-26 16:26:01 +02:00 |
|
|
4e40e42011
|
(v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix
|
2020-09-18 16:05:53 +02:00 |
|
|
7b6dd676f7
|
(v1.3.0.9018) language corrections
|
2020-09-14 12:21:23 +02:00 |
|
|
c4b87fe241
|
(v1.3.0.9014) as.mo() speed improvement
|
2020-09-03 12:31:48 +02:00 |
|
|
5e45fdcf2a
|
(v1.3.0.9007) tibble printing
|
2020-08-26 11:33:54 +02:00 |
|
|
c8c8bb4e3a
|
(v1.3.0.9006) website update
|
2020-08-21 11:40:13 +02:00 |
|
|
09fba38ea6
|
(v1.2.0.9035) as.mo() speed improvement
|
2020-07-22 10:24:23 +02:00 |
|
|
6ab468362d
|
(v1.2.0.9034) code cleaning
|
2020-07-13 09:17:24 +02:00 |
|
|
76fc8e1b14
|
(v1.2.0.9026) move to github
|
2020-07-08 14:48:06 +02:00 |
|
|
93a158aebd
|
(v1.2.0.9011) mo_domain(), improved error handling
|
2020-06-22 11:18:40 +02:00 |
|
|
86d44054f0
|
(v1.1.0.9020) updated taxonomy
|
2020-05-27 16:37:49 +02:00 |
|
|
ae1969b941
|
(v1.1.0.9019) mo_source fix
|
2020-05-25 01:01:14 +02:00 |
|
|
7f3da74b17
|
(v1.1.0.9004) lose dependencies
|
2020-05-16 13:05:47 +02:00 |
|
|
b040185269
|
(v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI
|
2020-04-29 14:33:44 +02:00 |
|
|
9b8b02960e
|
(v0.9.0.9023) EUCAST 2020 guidelines
|
2020-02-14 19:54:13 +01:00 |
|
|
a13c62e6e8
|
(v0.9.0.9016) Support SNOMED codes
|
2020-01-27 19:14:23 +01:00 |
|
|
ced1a7b7fa
|
(v0.9.0.9008) Happy new year! Add lifecycles
|
2020-01-05 17:22:09 +01:00 |
|
|
56ce9bf665
|
(v0.9.0) website fixes
|
2019-11-30 12:01:50 +01:00 |
|
|
c5f00f4a9f
|
(v0.8.0.9036) complete documentation rewrite
|
2019-11-28 22:32:17 +01:00 |
|
|
7c28b392b1
|
(v0.8.0.9035) add more mo codes
|
2019-11-24 22:48:56 +01:00 |
|
|
e53cc4990c
|
(v0.8.0.9034) add cid to antivirals
|
2019-11-23 12:39:57 +01:00 |
|
|
09c4b04cd0
|
(v0.8.0.9007) Enterobacterales order
|
2019-10-30 23:02:50 +01:00 |
|
|
00cdb498a0
|
(v0.7.1.9102) lintr
|
2019-10-11 17:21:02 +02:00 |
|
|
3596adb295
|
(v0.7.1.9076) mo codes
|
2019-09-20 12:33:05 +02:00 |
|
|
398c5bdc4f
|
(v0.7.1.9073) as.mo() self-learning algorithm
|
2019-09-15 22:57:30 +02:00 |
|
|
13d4fef801
|
(v0.7.1.9061) mo_property improvement
|
2019-08-26 10:03:37 +02:00 |
|
|
1d423cca89
|
(v0.7.1.9035) cephalosporins and unit tests
|
2019-08-11 19:07:26 +02:00 |
|
|
6a349bf757
|
(v0.7.1.9032) eucast_rules() improvements
|
2019-08-09 14:28:46 +02:00 |
|
|
90c874025a
|
(v0.7.1.9027) tibble printing
|
2019-08-07 15:37:39 +02:00 |
|
|
68230d0712
|
(v0.7.1.90012) mo_shortname fix
|
2019-07-10 21:36:51 +02:00 |
|
|
b15d59cf03
|
(v0.7.1.9009) note for WHOCC
|
2019-07-09 11:22:46 +02:00 |
|
|
156d550895
|
(v0.7.1.9005) new rsi calculations, atc class removal
|
2019-07-01 14:03:15 +02:00 |
|
|
65c6702b21
|
(v0.7.1.9004) atc class removal
|
2019-06-27 11:57:45 +02:00 |
|
|
c9156c004a
|
(v0.7.0.9013) mo_synonym fix
|
2019-06-22 14:49:12 +02:00 |
|
|
9c39c35f86
|
(v0.7.0.9010) mo_synonyms, plot/barplot fixes
|
2019-06-16 21:42:40 +02:00 |
|
|
8f674e19bb
|
(v0.7.0.9005) ab algorithm update
|
2019-06-11 14:18:25 +02:00 |
|
|
f02679fb63
|
(v0.7.0.9001) new pathovars, small fixes
|
2019-06-07 22:47:37 +02:00 |
|
|
2667fff8a7
|
(v0.6.1.9050) support staged install
|
2019-06-01 20:40:49 +02:00 |
|
|
4ed27c7e7a
|
(v0.6.1.9046) ggplot fix
|
2019-05-31 20:25:57 +02:00 |
|
|
27380fa021
|
fixes for microorganisms.codes
|
2019-05-28 16:50:40 +02:00 |
|
|
4ca00e1868
|
speed improvement eucast_rules(), support more old MO codes
|
2019-05-20 12:00:18 +02:00 |
|
|
0dc0715dc6
|
CI tests
|
2019-05-13 12:21:57 +02:00 |
|
|
68cc7ef0d0
|
new antibiotics
|
2019-05-10 16:44:59 +02:00 |
|
|
cffb7787d8
|
cfta streptococci
|
2019-04-09 10:34:40 +02:00 |
|
|
fbc9191b13
|
new EUCAST rules algorithm
|
2019-04-05 18:47:39 +02:00 |
|
|
29f444543d
|
added Becker 2019
|
2019-03-26 14:24:03 +01:00 |
|
|
c6a12266e7
|
DSMZ data
|
2019-03-18 14:29:41 +01:00 |
|
|
b319b89750
|
WHONET fix
|
2019-03-09 08:21:00 +01:00 |
|
|
e835525cf6
|
unknown codes, rsi fix
|
2019-03-02 22:47:04 +01:00 |
|
|
2565b60024
|
rlang dependency, new fungi
|
2019-02-28 13:56:28 +01:00 |
|
|
4ba2ff68e0
|
language fix
|
2019-02-26 13:02:04 +01:00 |
|
|
f9ded23023
|
as.mo improvement
|
2019-02-26 12:33:26 +01:00 |
|
|
c506d2893b
|
as.mo improvements
|
2019-02-25 15:52:32 +01:00 |
|
|
0ec76cfa98
|
as.mo improvement
|
2019-02-25 10:42:57 +01:00 |
|
|
41ad7a22c8
|
mo_rank mo_url, added Tremellales
|
2019-02-22 22:12:10 +01:00 |
|
|
68a9a35ed6
|
algorithm update
|
2019-02-21 18:55:52 +01:00 |
|