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						9c566585b0
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							first inclusion of ITIS data
						
						
						
						
						
						
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						2018-09-24 23:33:29 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						5d80cef338
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							added taxonomic data from ITIS
						
						
						
						
						
						
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						2018-09-17 20:53:32 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						db14781593
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							add labels_rsi_count
						
						
						
						
						
						
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						2018-09-16 22:11:17 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						b792a2754e
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							added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
						
						
						
						
						
						
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						2018-09-16 16:43:29 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						d049ec9e69
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							ggplot2_rsi fix
						
						
						
						
						
						
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						2018-09-13 14:48:34 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						cb0d74a4f0
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							support for French and Italian, added quote to freq
						
						
						
						
						
						
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						2018-09-10 15:45:25 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						b83e6a9380
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							algoritm improvement, removed all Catabacter except for C. hongkongensis
						
						
						
						
						
						
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						2018-09-10 11:40:54 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						4816419f0c
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							AI improvements for microorganisms
						
						
						
						
						
						
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						2018-09-09 12:11:44 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						26f5be0033
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							support for portuguese, language determination based on system
						
						
						
						
						
						
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						2018-09-08 16:06:47 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						de36b0be23
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							fix for empty values in mo_property
						
						
						
						
						
						
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						2018-09-05 12:21:27 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						e39a9a8b05
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							added mo_shortname
						
						
						
						
						
						
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						2018-09-05 10:51:46 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						790bd1622d
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							added vanA to vanE positive Enterococci
						
						
						
						
						
						
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						2018-09-05 09:49:19 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						b388e3fee7
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							Support for German and Spanish microorganism properties, cleanup
						
						
						
						
						
						
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						2018-09-04 11:33:30 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						75fe4d401f
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							new MOs, cleanup
						
						
						
						
						
						
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						2018-09-01 21:19:46 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						5965d3c794
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							replaced bactid by mo
						
						
						
						
						
						
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						2018-08-31 13:36:19 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						98ff131680
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							support for older versions of ggplot2
						
						
						
						
						
						
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						2018-08-29 16:39:28 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						d654444c8e
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							re added nrow
						
						
						
						
						
						
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						2018-08-29 16:35:32 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						d9e68e0a50
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							ggplot_rsi example update, more unit tests
						
						
						
						
						
						
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						2018-08-29 16:25:57 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						029157b3be
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							163 new trade names, added ab_tradenames
						
						
						
						
						
						
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						2018-08-29 12:27:37 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						972fc4f6c7
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							ab_* functions, mo_* functions, 180 new microorganisms, speed improvement for bactid
						
						
						
						
						
						
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						2018-08-28 13:51:13 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						2acdb1981c
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							atc and bactid functions, readme update
						
						
						
						
						
						
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						2018-08-25 22:01:14 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						a100d07da6
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							removed ratio, better rsi_calc, update for freq
						
						
						
						
						
						
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						2018-08-24 11:08:20 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						febd0ca885
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							geom_rsi - any parameter
						
						
						
						
						
						
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						2018-08-23 21:27:15 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						da5379c881
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							quasiquotation, alpha for geom_rsi
						
						
						
						
						
						
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						2018-08-23 00:40:36 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						3e87c8f409
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							count_* functions
						
						
						
						
						
						
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						2018-08-22 00:02:26 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						1699d7b8b3
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							better example of grouping variable in ggplot_rsi
						
						
						
						
						
						
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						2018-08-14 12:07:03 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						59ce1eb1b1
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							ggplot_rsi improvements
						
						
						
						
						
						
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						2018-08-13 16:42:37 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						dba06c3295
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							abname improvement, small fixes
						
						
						
						
						
						
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						2018-08-13 11:00:53 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						ce2cdb9309
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							support groups for portion_df, update README
						
						
						
						
						
						
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						2018-08-12 22:34:03 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						e5d32cafe0
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							new unit tests for ggplot, small fixes
						
						
						
						
						
						
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						2018-08-12 17:44:06 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						1ba7d883fe
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							new ggplot enhancement
						
						
						
						
						
						
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						2018-08-11 21:30:00 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						53fa198e35
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							new portion functions
						
						
						
						
						
						
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						2018-08-10 15:01:05 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						ae2433a020
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							rsi family for resistance analysis
						
						
						
						
						
						
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						2018-08-03 14:49:29 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						6262315527
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							Becker classification
						
						
						
						
						
						
						
						Lancefield classification
Added Lancefield groups to `microorganisms` data set 
						
						
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						2018-08-02 13:15:45 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						edd2dd09dc
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							rsi for freq
						
						
						
						
						
						
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						2018-08-01 22:37:28 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						d8f70a74de
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							clipboard error
						
						
						
						
						
						
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						2018-08-01 10:32:24 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						7c667eb732
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							emph guess_bactid
						
						
						
						
						
						
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						2018-08-01 08:03:31 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						826694323b
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							new functions R, RI, SI, S
						
						
						
						
						
						
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						2018-07-29 22:14:51 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						feab1cad6b
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							small fixes
						
						
						
						
						
						
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						2018-07-28 09:34:03 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						498e88b5cf
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							improvement for forecasting resistance
						
						
						
						
						
						
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						2018-07-26 16:30:42 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						d9e204031d
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							update to septic_patients, speed improvements
						
						
						
						
						
						
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						2018-07-25 14:17:04 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						03a3cb397b
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							clipboard update
						
						
						
						
						
						
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						2018-07-23 15:09:19 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						8421638b60
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							new class bactid
						
						
						
						
						
						
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						2018-07-23 14:14:03 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						40de1b4ac2
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							man
						
						
						
						
						
						
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						2018-07-23 10:37:49 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						9920ac8a5c
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							fix for keyab, more examples
						
						
						
						
						
						
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						2018-07-23 10:35:39 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						ad662d7bab
					 | 
					
						
						
							
							new col names for key_antibiotics
						
						
						
						
						
						
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						2018-07-19 15:11:23 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						2a4d759fbc
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							check fails
						
						
						
						
						
						
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						2018-07-17 14:48:11 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						5cb9c541f8
					 | 
					
						
						
							
							new algorithm key abs
						
						
						
						
						
						
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						2018-07-17 13:02:05 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						a5a4354651
					 | 
					
						
						
							
							speed improvements
						
						
						
						
						
						
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						2018-07-17 10:32:26 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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						715a7630ca
					 | 
					
						
						
							
							support format.freq
						
						
						
						
						
						
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						2018-07-16 16:41:48 +02:00 | 
					
					
						
						
						
							
							
							
							
							
							
							
							
						
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