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Commit Graph

259 Commits

Author SHA1 Message Date
331c1f6508 (v1.5.0.9012) ampc_cephalosporin_resistance for I 2021-01-25 21:58:00 +01:00
286eaa9699 (v1.5.0.9010) MDRO vignette update, get_episode for < day 2021-01-24 14:48:56 +01:00
4eab095306 (v1.5.0.9006) major documentation update 2021-01-18 16:57:56 +01:00
d014955ce0 (v.1.5.0.9000) implementation of EUCAST rules v11 (2021) 2021-01-12 22:08:04 +01:00
3b84b8be75 v1.5.0 2021-01-06 11:16:17 +01:00
d3f007bf65 (v1.4.0.9053) unit test old R versions 2020-12-29 21:23:01 +01:00
afc325c314 (v1.4.0.9050) ab selectors base R 2020-12-27 20:32:40 +01:00
8b52f9b1be (v1.4.0.9047) unit tests 2020-12-27 00:30:28 +01:00
acbd0cf7ca (v1.4.0.9046) get_episode 2020-12-27 00:07:00 +01:00
df37584189 (v1.4.0.9044) mo tibble printing, mo_shortname() fix 2020-12-24 23:29:10 +01:00
128ebcfd62 (v1.4.0.9043) documentation update 2020-12-22 00:51:17 +01:00
81af41da3a (v1.4.0.9041) updates based on review 2020-12-17 16:22:25 +01:00
1faa816090 (v1.4.0.9040) LA-MRSA / CA-MRSA 2020-12-16 16:18:53 +01:00
2edd3339db (v1.4.0.9036) more unit tests 2020-12-11 12:17:23 +01:00
e03b3c96d3 (v1.4.0.9030) as.mo() fix for known lab codes 2020-12-03 16:59:04 +01:00
deefce9520 (v1.4.0.9021) more robust class setting 2020-11-16 16:57:55 +01:00
05fb213a7c (v1.4.0.9020) mo_is_intrinsic_resistant 2020-11-16 11:03:24 +01:00
01d9522434 (v1.4.0.9017) stringsAsFactors definitions 2020-11-11 16:49:27 +01:00
15c732703d (v1.4.0.9015) bugfix 2020-11-10 16:35:56 +01:00
dd5a0319ef (v1.4.0.9014) bugfix 2020-11-09 15:18:36 +01:00
d3b1d33210 (v1.4.0.9013) is_gram_negative/positive update 2020-11-09 13:07:02 +01:00
423879c034 (v1.4.0.9012) reference_df fix 2020-11-05 01:11:49 +01:00
5a607abb36 (v1.4.0.9011) message formatting 2020-10-27 15:56:51 +01:00
3d096d96c2 (v1.4.0.9009) bugfix for older R version 2020-10-26 15:53:31 +01:00
760d69a3e0 (v1.4.0.9008) like variations 2020-10-26 12:23:03 +01:00
2ef7dfc8a3 (v1.4.0.9003) CoNS update 2020-10-20 21:00:57 +02:00
ddae8085e1 (v1.4.0.9002) bugfix 2020-10-19 20:44:45 +02:00
4e9ccb4435 (v1.4.0.9001) is_gram_positive(), is_gram_negative(), parameter hardening 2020-10-19 17:09:19 +02:00
28e77680c5 (v1.4.0) matching score update 2020-10-08 11:16:03 +02:00
baf510183c (v1.3.0.9038) prefinal 1.4.0 2020-10-04 19:26:43 +02:00
4e0374af29 (v1.3.0.9035) mdro() for EUCAST 3.2, examples cleanup 2020-09-29 23:35:46 +02:00
36ec8b0d81 (v1.3.0.9033) skimr fix 2020-09-28 11:00:59 +02:00
519aada54f (v1.3.0.9032) support skimr 2020-09-28 01:08:55 +02:00
22f6ceb3e4 (v1.3.0.9031) matching score update 2020-09-26 16:51:17 +02:00
050a9a04fb (v1.3.0.9030) matching score update 2020-09-26 16:26:01 +02:00
9667c2994f (v1.3.0.9029) eucast rules fix, unique() 2020-09-25 14:44:50 +02:00
c19095a3d5 (v1.3.0.9026) eucast expert rules 3.2 2020-09-24 00:30:11 +02:00
d049cce69b (v1.3.0.9023) optimalisation 2020-09-19 11:54:01 +02:00
4e40e42011 (v1.3.0.9022) mo_matching_score(), poorman update, as.rsi() fix 2020-09-18 16:05:53 +02:00
89401ede9f (v1.3.0.9021) typo 2020-09-14 20:41:19 +02:00
ab60f613aa (v1.3.0.9020) fix for uncertainty in as.mo() 2020-09-14 19:41:48 +02:00
354c606d6a (v1.3.0.9019) small fix 2020-09-14 14:08:07 +02:00
7b6dd676f7 (v1.3.0.9018) language corrections 2020-09-14 12:21:23 +02:00
0f6760d427 (v1.3.0.9017) small fix 2020-09-12 13:54:21 +02:00
3ff871afeb (v1.3.0.9016) mo_uncertainties() overhaul 2020-09-12 08:49:01 +02:00
68e9cb78e9 (v1.3.0.9015) as.mo() speedup for valid taxonomic names 2020-09-03 20:59:21 +02:00
c4b87fe241 (v1.3.0.9014) as.mo() speed improvement 2020-09-03 12:31:48 +02:00
74a172ef55 (v1.3.0.9010) S3 extensions without dependencies 2020-08-28 21:55:47 +02:00
5e45fdcf2a (v1.3.0.9007) tibble printing 2020-08-26 11:33:54 +02:00
c8c8bb4e3a (v1.3.0.9006) website update 2020-08-21 11:40:13 +02:00
08d62bb5d5 (v1.3.0.9002) intrinsic_resistant data set 2020-08-14 13:36:10 +02:00
ab2b359e6b (v1.2.0.9036) unit test fix 2020-07-22 12:29:51 +02:00
09fba38ea6 (v1.2.0.9035) as.mo() speed improvement 2020-07-22 10:24:23 +02:00
6ab468362d (v1.2.0.9034) code cleaning 2020-07-13 09:17:24 +02:00
76fc8e1b14 (v1.2.0.9026) move to github 2020-07-08 14:48:06 +02:00
93a158aebd (v1.2.0.9011) mo_domain(), improved error handling 2020-06-22 11:18:40 +02:00
ac12392da3 (v1.2.0.9008) ab_class improvement 2020-06-17 15:14:37 +02:00
b44e2c9202 v1.2.0 2020-05-28 16:48:55 +02:00
86d44054f0 (v1.1.0.9020) updated taxonomy 2020-05-27 16:37:49 +02:00
cb1814f5ff (v1.1.0.9013) lose dependencies 2020-05-19 13:18:01 +02:00
19703eb5d3 (v1.1.0.9012) lose dependencies 2020-05-19 12:08:49 +02:00
7f3da74b17 (v1.1.0.9004) lose dependencies 2020-05-16 13:05:47 +02:00
b040185269 (v1.1.0.9000) CLSI as.rsi() fix, better vctrs support, new CI 2020-04-29 14:33:44 +02:00
cde65141d9 (v1.0.1.9007) small bugfix 2020-04-14 15:10:09 +02:00
7a6f819232 (v1.0.1.9006) added generic CLSI rules 2020-04-14 14:12:31 +02:00
d1cb7d3b6f (v1.0.1.9005) as.mo() improvements 2020-04-13 21:09:56 +02:00
219cff403f (v1.0.1.9004) Support dplyr 1.0.0 2020-03-14 14:05:43 +01:00
9b8b02960e (v0.9.0.9023) EUCAST 2020 guidelines 2020-02-14 19:54:13 +01:00
c7a76ba713 (v0.9.0.9020) as.mo() improvement 2020-02-09 22:04:29 +01:00
f152ab9a48 (v0.9.0.9018) Remove mo_history 2020-01-31 23:27:38 +01:00
a13c62e6e8 (v0.9.0.9016) Support SNOMED codes 2020-01-27 19:14:23 +01:00
449d9bde35 (v0.9.0.9012) Support for LOINC codes 2020-01-26 20:20:00 +01:00
ced1a7b7fa (v0.9.0.9008) Happy new year! Add lifecycles 2020-01-05 17:22:09 +01:00
ba3ce77f02 (v0.9.0.9005) as.mo for G. species 2019-12-21 10:56:06 +01:00
2db2a2458a (v0.9.0.9003) as.mo() speedup for fullnames 2019-12-20 15:05:58 +01:00
c5f00f4a9f (v0.8.0.9036) complete documentation rewrite 2019-11-28 22:32:17 +01:00
e53cc4990c (v0.8.0.9034) add cid to antivirals 2019-11-23 12:39:57 +01:00
267320f15f (v0.8.0.9033) antivirals data set, cleanup 2019-11-18 12:10:47 +01:00
67f3f4387b (v0.8.0.9032) fix regex error 2019-11-15 16:50:46 +01:00
09e2730b53 (v0.8.0.9031) as.mo() improvements 2019-11-15 15:25:03 +01:00
29e448883d (v0.8.0.9008) new verbose mode for MDROs 2019-11-03 22:24:42 +01:00
412077a6f2 (v0.8.0.9005) fix unit tests 2019-10-26 22:21:26 +02:00
3e5ab53209 (v0.8.0.9002) eucast_rules() fix for S. maltophilia 2019-10-23 14:48:25 +02:00
00cdb498a0 (v0.7.1.9102) lintr 2019-10-11 17:21:02 +02:00
c8f6b97847 (v0.7.1.9100) bug_drug speed, MIC levels 2019-10-08 22:21:33 +02:00
8bc4081b03 (v0.7.1.9092) as.ab() improvements 2019-10-04 15:36:12 +02:00
edb599ae0b (v0.7.1.9091) percentage from clean pkg 2019-09-30 16:45:36 +02:00
38336d7408 (v0.7.1.9086) small fix 2019-09-23 23:00:18 +02:00
ad5f211a8f (v0.7.1.9085) Salmonella fix 2019-09-23 21:24:37 +02:00
76dc948067 (v0.7.1.9084) CI fix 2019-09-23 20:55:54 +02:00
8ce252fbc5 (v0.7.1.9083) LIS code improvement 2019-09-23 17:32:05 +02:00
64d9829030 (v0.7.1.9081) bug_drug fixes 2019-09-23 13:53:50 +02:00
57b0bd92a0 (v0.7.1.9079) small fixes 2019-09-22 12:41:45 +02:00
46b61e9a70 (v0.7.1.9078) unit tests 2019-09-20 14:50:02 +02:00
40e6b3e8f6 (v0.7.1.9077) mo codes fix 2019-09-20 14:18:29 +02:00
3596adb295 (v0.7.1.9076) mo codes 2019-09-20 12:33:05 +02:00
e2aa4f996b (v0.7.1.9075) new microorganism codes 2019-09-18 15:46:09 +02:00
f553a08a7b (v0.7.1.9074) CI updates 2019-09-16 12:00:56 +02:00
398c5bdc4f (v0.7.1.9073) as.mo() self-learning algorithm 2019-09-15 22:57:30 +02:00
cd178ee569 (v0.7.1.9072) key_antibiotics() for foreign systems 2019-09-12 15:08:53 +02:00