dr. M.S. (Matthijs) Berends
05d536ebb7
complexes
2022-11-17 15:23:29 +01:00
dr. M.S. (Matthijs) Berends
8d1679bab3
website update
2022-11-12 09:44:36 +01:00
dr. M.S. (Matthijs) Berends
af205e2705
update collabs
2022-11-10 22:07:35 +01:00
dr. M.S. (Matthijs) Berends
2d90218305
documentation fix
2022-11-05 12:06:40 +01:00
dr. M.S. (Matthijs) Berends
8dc94a9eda
documentation fix
2022-11-05 09:31:19 +01:00
dr. M.S. (Matthijs) Berends
3b652983b7
documentation fix
2022-11-05 08:18:06 +01:00
dr. M.S. (Matthijs) Berends
faca6d608a
mean AMR distance
2022-10-21 16:02:14 +02:00
dr. M.S. (Matthijs) Berends
178ab5e5ff
mean AMR distance
2022-10-21 15:59:31 +02:00
dr. M.S. (Matthijs) Berends
4bebba3610
fix for scoped dplyr verbs
2022-10-21 15:13:19 +02:00
dr. M.S. (Matthijs) Berends
85e2fbe4a3
remove warnings from unit tests
2022-10-19 11:47:57 +02:00
dr. M.S. (Matthijs) Berends
f203928f7e
coercion fixes
2022-10-19 06:59:36 +02:00
dr. M.S. (Matthijs) Berends
3fc39198d0
unit test fix
2022-10-18 23:03:16 +02:00
dr. M.S. (Matthijs) Berends
e5e6d2200d
fix add manual ab
2022-10-18 22:53:38 +02:00
dr. M.S. (Matthijs) Berends
ad68b50ecd
custom ab fix
2022-10-15 15:20:13 +02:00
dr. M.S. (Matthijs) Berends
57d66cd9d0
doc fix
2022-10-10 21:38:39 +02:00
dr. M.S. (Matthijs) Berends
4da32e3d40
set up Git LFS for large files
2022-08-26 14:02:08 +02:00
dr. M.S. (Matthijs) Berends
e05d0365a9
website update
2022-08-25 19:19:16 +02:00
dr. M.S. (Matthijs) Berends
5501cffbb0
website update
2022-08-25 19:18:48 +02:00
dr. M.S. (Matthijs) Berends
d3000a9492
website update
2022-08-25 19:16:16 +02:00
dr. M.S. (Matthijs) Berends
2cbce2cefa
website update
2022-08-25 19:14:07 +02:00
dr. M.S. (Matthijs) Berends
53c4b37252
website update
2022-08-25 19:11:02 +02:00
dr. M.S. (Matthijs) Berends
bdbc112f99
website update
2022-08-21 17:22:34 +02:00
dr. M.S. (Matthijs) Berends
d6676e9443
disk documentation fix
2022-08-21 16:52:09 +02:00
dr. M.S. (Matthijs) Berends
952d16de33
new, automated website
2022-08-21 16:37:20 +02:00
dr. M.S. (Matthijs) Berends
7226b70c3d
update languages
2022-08-20 20:17:14 +02:00
dr. M.S. (Matthijs) Berends
3f2f60ab77
language updates
2022-08-19 12:33:14 +02:00
dr. M.S. (Matthijs) Berends
ab97268f4c
(v1.8.1.9014) add Toxoplasma
2022-08-12 23:27:15 +02:00
dr. M.S. (Matthijs) Berends
7f981e7778
(v1.8.1.9013) add Toxoplasma
2022-06-10 13:15:23 +02:00
dr. M.S. (Matthijs) Berends
b84d647cac
(v1.8.1.9012) update prevalence of some genera
2022-06-03 13:28:55 +02:00
dr. M.S. (Matthijs) Berends
1b84564d36
(v1.8.1.9011) update prevalence of some genera
2022-06-03 12:43:25 +02:00
dr. M.S. (Matthijs) Berends
70a07bad39
(v1.8.1.9010) random when pkg not loaded
2022-05-16 12:52:50 +02:00
dr. M.S. (Matthijs) Berends
2c5bc73ed6
(v1.8.1.9009) random when pkg not loaded
2022-05-16 09:29:46 +02:00
dr. M.S. (Matthijs) Berends
58ed15e7ac
(v1.8.1.9008) website update
2022-05-11 10:26:58 +02:00
dr. M.S. (Matthijs) Berends
6de5375256
(v1.8.1.9007) website update
2022-05-11 10:10:31 +02:00
dr. M.S. (Matthijs) Berends
859224e9d0
(v1.8.1.9006) added EUCAST 2022 and CLSI 2022
2022-05-10 21:34:30 +02:00
dr. M.S. (Matthijs) Berends
680e8e7a41
(v1.8.1.9005) as.rsi() fix for EUCAST
2022-05-10 17:01:37 +02:00
dr. M.S. (Matthijs) Berends
d4e22069bc
(v1.8.1.9004) fix for table() on MICs
2022-05-09 21:33:27 +02:00
dr. M.S. (Matthijs) Berends
1c891cc90c
(v1.8.1.9003) set_mo_source() fix
2022-05-09 20:36:44 +02:00
dr. M.S. (Matthijs) Berends
152db9d1b5
(v1.8.1.9002) fix for table() on MICs
2022-05-09 17:08:40 +02:00
dr. M.S. (Matthijs) Berends
4754848e96
(v1.8.1.9001) update unit tests, fixes #53
2022-04-08 11:02:45 +02:00
dr. M.S. (Matthijs) Berends
7b0f1596bd
(v1.8.0.9010) as.mo improvement
2022-03-15 17:35:02 +01:00
dr. M.S. (Matthijs) Berends
0fb9a1b194
prerelease 1.8.1
2022-03-14 16:43:15 +01:00
dr. M.S. (Matthijs) Berends
45e9546538
prerelease 1.8.1
...
Merge branch 'development' of https://github.com/msberends/AMR into development
# Conflicts:
# docs/articles/AMR.html
# docs/articles/AMR_files/figure-html/disk_plots-1.png
# docs/articles/AMR_files/figure-html/disk_plots_mo_ab-1.png
# docs/articles/AMR_files/figure-html/mic_plots-1.png
# docs/articles/AMR_files/figure-html/mic_plots-2.png
# docs/articles/AMR_files/figure-html/mic_plots_mo_ab-1.png
# docs/articles/AMR_files/figure-html/mic_plots_mo_ab-2.png
# docs/articles/AMR_files/figure-html/plot 1-1.png
# docs/articles/AMR_files/figure-html/plot 3-1.png
# docs/articles/AMR_files/figure-html/plot 4-1.png
# docs/articles/AMR_files/figure-html/plot 5-1.png
# docs/articles/EUCAST.html
# docs/articles/MDR.html
# docs/articles/PCA.html
# docs/articles/PCA_files/figure-html/unnamed-chunk-6-1.png
# docs/articles/PCA_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/SPSS.html
# docs/articles/WHONET.html
# docs/articles/WHONET_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/benchmarks.html
# docs/articles/benchmarks_files/figure-html/unnamed-chunk-4-1.png
# docs/articles/datasets.html
# docs/articles/resistance_predict.html
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-4-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-5-2.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-6-1.png
# docs/articles/resistance_predict_files/figure-html/unnamed-chunk-7-1.png
# docs/articles/welcome_to_AMR.html
# docs/news/index.html
# docs/pkgdown.yml
# docs/reference/AMR-deprecated.html
# docs/reference/AMR.html
# docs/reference/WHOCC.html
# docs/reference/WHONET.html
# docs/reference/antibiotics.html
# docs/reference/catalogue_of_life.html
# docs/reference/catalogue_of_life_version.html
# docs/reference/dosage.html
# docs/reference/example_isolates.html
# docs/reference/example_isolates_unclean.html
# docs/reference/g.test.html
# docs/reference/intrinsic_resistant.html
# docs/reference/microorganisms.codes.html
# docs/reference/microorganisms.html
# docs/reference/microorganisms.old.html
# docs/reference/rsi_translation.html
2022-03-14 16:37:37 +01:00
dr. M.S. (Matthijs) Berends
1b0983e382
(v1.8.1) prerelease 1.8.1
2022-03-14 16:36:10 +01:00
dr. M.S. (Matthijs) Berends
08d387b5ce
(v1.8.0.9005) as.rsi() fix
2022-03-10 19:33:25 +01:00
dr. M.S. (Matthijs) Berends
ad82bb4ce0
(v1.8.0.9004) MIC printing in tibbles
2022-03-03 21:11:02 +01:00
dr. M.S. (Matthijs) Berends
3b2b2be5f8
(v1.8.0.9002) as.rsi() cleanup, more informative warnings
2022-03-02 15:38:55 +01:00
dr. M.S. (Matthijs) Berends
18e8525d10
(v1.8.0.9001) as.mo improvement, fixes #52
2022-02-26 21:58:23 +01:00
dr. M.S. (Matthijs) Berends
be792cc9eb
(v1.8.0.9000) unit tests for R 3.3
2022-02-01 17:08:10 +01:00
dr. M.S. (Matthijs) Berends
f5dcf0ad58
v1.8.0 as accepted by CRAN
2022-01-07 16:27:13 +01:00
dr. M.S. (Matthijs) Berends
25cef46c59
(v1.8.0) prerelease 1.8.0
2021-12-23 18:56:28 +01:00
dr. M.S. (Matthijs) Berends
3f4ff260d2
unit test
2021-12-23 15:36:54 +01:00
dr. M.S. (Matthijs) Berends
75dac113b6
(v1.7.1.9077) skimr support only for newer R versions
2021-12-23 13:38:25 +01:00
dr. M.S. (Matthijs) Berends
ed22b83c28
fix macOS r-lib/actions unit test
2021-12-22 09:44:10 +01:00
dr. M.S. (Matthijs) Berends
d9274bcd0a
(v1.7.1.9075) assignment operator
2021-12-14 22:59:27 +01:00
dr. M.S. (Matthijs) Berends
76dee66852
(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests
2021-12-14 22:39:23 +01:00
dr. M.S. (Matthijs) Berends
bd4bb1d72f
(v1.7.1.9073) as.rsi() fix for UTIs
2021-12-14 21:47:14 +01:00
dr. M.S. (Matthijs) Berends
5eef01165e
(v1.7.1.9072) as.rsi() fix for UTIs
2021-12-14 12:33:29 +01:00
dr. M.S. (Matthijs) Berends
0cbf8f48b6
(v1.7.1.9071) rsi disk fix
2021-12-13 11:57:34 +01:00
dr. M.S. (Matthijs) Berends
578e7dfee9
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends
f90e27c1b0
(v1.7.1.9069) CLSI 2021 support
2021-12-12 11:36:58 +01:00
dr. M.S. (Matthijs) Berends
1e66a3daf3
(v1.7.1.9068) new logo, unit tests
2021-12-12 11:07:02 +01:00
dr. M.S. (Matthijs) Berends
56f1ce328a
(v1.7.1.9067) Support for Swedish and Russian
2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends
5b5f70a103
(v1.7.1.9066) mdro EUCAST v3.3
2021-12-11 15:29:30 +01:00
dr. M.S. (Matthijs) Berends
e0a2634f14
(v1.7.1.9065) unit tests
2021-12-11 15:13:44 +01:00
dr. M.S. (Matthijs) Berends
77ba4318ea
(v1.7.1.9064) eucast 3.3 for mdro(), major change to repeated calling
2021-12-11 13:41:31 +01:00
dr. M.S. (Matthijs) Berends
e18c49ed93
(v1.7.1.9063) not_intrinsic_resistant
2021-12-09 10:48:25 +01:00
dr. M.S. (Matthijs) Berends
e63defe324
(v1.7.1.9062) website update
2021-12-06 11:12:30 +01:00
dr. M.S. (Matthijs) Berends
1fa3fc6af2
(v1.7.1.9061) bugfix set_ab_names
2021-12-05 23:21:59 +01:00
dr. M.S. (Matthijs) Berends
75965124ef
(v1.7.1.9060) bugfix set_ab_names
2021-12-05 23:11:10 +01:00
dr. M.S. (Matthijs) Berends
b747036deb
(v1.7.1.9059) bugfix set_ab_names
2021-12-05 22:59:06 +01:00
dr. M.S. (Matthijs) Berends
7965468ccd
(v1.7.1.9058) vars selection for set_ab_names()
2021-12-05 22:06:45 +01:00
dr. M.S. (Matthijs) Berends
3abe61fd61
(v1.7.1.9057) NAs in get_episode()
2021-12-02 13:32:14 +01:00
dr. M.S. (Matthijs) Berends
5375f75829
(v1.7.1.9056) unit tests
2021-11-29 11:55:18 +01:00
dr. M.S. (Matthijs) Berends
c8698347cb
(v1.7.1.9055) added EUCAST 3.3 and all LPSN records numbers
2021-11-29 10:38:38 +01:00
dr. M.S. (Matthijs) Berends
694cf5ba77
(v1.7.1.9054) mdro() update - fixes #49 , first_isolate() speedup
2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends
9a2c431e16
(v1.7.1.9053) fortify() methods
2021-11-01 13:51:13 +01:00
dr. M.S. (Matthijs) Berends
91149d6d35
(v1.7.1.9052) eucast-update
2021-10-06 16:22:36 +02:00
dr. M.S. (Matthijs) Berends
37e6e35ec4
(v1.7.1.9051) updated taxonomy, updated git branch name
2021-10-06 13:23:57 +02:00
dr. M.S. (Matthijs) Berends
8f5e5a3fc2
(v1.7.1.9050) fix for as.mo
2021-10-05 14:00:35 +02:00
dr. M.S. (Matthijs) Berends
2bcf28281d
(v1.7.1.9049) unit tests
2021-10-05 09:58:08 +02:00
dr. M.S. (Matthijs) Berends
d1b16ce641
(v1.7.1.9048) unit tests
2021-10-04 10:22:10 +02:00
dr. M.S. (Matthijs) Berends
9b97233be2
(v1.7.1.9046) unit tests
2021-10-03 13:50:52 +02:00
dr. M.S. (Matthijs) Berends
b0c84cce9c
(v1.7.1.9045) unit tests
2021-09-29 20:24:02 +02:00
dr. M.S. (Matthijs) Berends
557ce74fd7
(v1.7.1.9044) unit tests
2021-09-29 20:13:52 +02:00
dr. M.S. (Matthijs) Berends
45f597cac5
(v1.7.1.9043) unit tests
2021-09-29 20:10:44 +02:00
dr. M.S. (Matthijs) Berends
0775802b7f
check file
2021-09-29 16:43:05 +02:00
dr. M.S. (Matthijs) Berends
e8d3ce05d7
(v1.7.1.9041) new GH actions, branches rename
2021-09-29 16:36:03 +02:00
dr. M.S. (Matthijs) Berends
93a4734b44
(v1.7.1.9040) Support for Danish
2021-09-29 12:12:35 +02:00
dr. M.S. (Matthijs) Berends
5f433d6e5c
(v1.7.1.9039) reinitiate all units tests
2021-09-03 13:08:36 +02:00
dr. M.S. (Matthijs) Berends
81a1a432bd
(v1.7.1.9038) dplyr grouping fix on windows?
2021-09-01 16:52:55 +02:00
dr. M.S. (Matthijs) Berends
bcab74fb6d
(v1.7.1.9037) dplyr grouping fix on windows?
2021-08-31 17:06:44 +02:00
dr. M.S. (Matthijs) Berends
953dfac9e5
(v1.7.1.9036) dplyr grouping fix on windows?
2021-08-30 16:49:46 +02:00
dr. M.S. (Matthijs) Berends
986bd826ee
(v1.7.1.9035) dplyr grouping fix on windows?
2021-08-30 15:43:12 +02:00
dr. M.S. (Matthijs) Berends
af23f91e5c
website update
2021-08-30 15:07:18 +02:00
dr. M.S. (Matthijs) Berends
1daa117e9f
(v1.7.1.9033) dplyr grouping fix on windows?
2021-08-30 15:01:32 +02:00
dr. M.S. (Matthijs) Berends
6ca6a3f6df
(v1.7.1.9032) dplyr grouping fix on windows?
2021-08-30 14:17:27 +02:00
dr. M.S. (Matthijs) Berends
e6ce25162e
(v1.7.1.9031) dplyr grouping fix on windows?
2021-08-30 14:07:46 +02:00
dr. M.S. (Matthijs) Berends
d6a916d70b
(v1.7.1.9030) unit test
2021-08-29 23:50:45 +02:00
dr. M.S. (Matthijs) Berends
f0a4d29fe0
(v1.7.1.9029) unit test fix
2021-08-21 10:20:05 +02:00
