dr. M.S. (Matthijs) Berends
91fa73dedf
add oxygen tolerance
2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends
e70f2cd32c
knitr format
2023-02-23 16:27:40 +01:00
dr. M.S. (Matthijs) Berends
bc434db835
bring back antibiogram(), without deps
2023-02-10 16:18:00 +01:00
dr. M.S. (Matthijs) Berends
1a0dc4bf46
revert back to pre-antibiogram
2023-02-09 13:07:39 +01:00
dr. M.S. (Matthijs) Berends
9e99e66f01
use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
2023-02-06 11:57:22 +01:00
Dr. Matthijs Berends
98e62c9af2
Replace RSI with SIR
2023-01-21 23:47:20 +01:00
dr. M.S. (Matthijs) Berends
86e28bafce
add mo_pathogenicity
2023-01-06 13:35:37 +01:00
dr. M.S. (Matthijs) Berends
f619fb683b
support new mo codes
2022-12-27 15:16:15 +01:00
Dr. Matthijs Berends
496c08d851
Implement extensive support for antiviral agents support ( #77 )
2022-11-13 08:46:10 +01:00
dr. M.S. (Matthijs) Berends
faca6d608a
mean AMR distance
2022-10-21 16:02:14 +02:00
dr. M.S. (Matthijs) Berends
178ab5e5ff
mean AMR distance
2022-10-21 15:59:31 +02:00
dr. M.S. (Matthijs) Berends
aa2c0639d0
add confidence intervals ( fixed #70 ), remove combine_IR
2022-10-20 16:08:01 +02:00
dr. M.S. (Matthijs) Berends
82e3198315
add add_custom_antimicrobials()
2022-10-10 20:20:39 +02:00
dr. M.S. (Matthijs) Berends
43c638d122
add mo_current()
2022-10-10 10:12:08 +02:00
Dr. Matthijs Berends
cd2acc4a29
New mo algorithm, prepare for 2.0
2022-10-05 09:12:22 +02:00
dr. M.S. (Matthijs) Berends
63fe160322
new rsi_interpretation_history
2022-09-01 15:20:57 +02:00
dr. M.S. (Matthijs) Berends
3fca703fbf
new AMR distance function
2022-08-30 21:48:02 +02:00
dr. M.S. (Matthijs) Berends
3f2f60ab77
language updates
2022-08-19 12:33:14 +02:00
dr. M.S. (Matthijs) Berends
152db9d1b5
(v1.8.1.9002) fix for table() on MICs
2022-05-09 17:08:40 +02:00
dr. M.S. (Matthijs) Berends
578e7dfee9
(v1.7.1.9070) Better WHONET support
2021-12-13 10:18:28 +01:00
dr. M.S. (Matthijs) Berends
56f1ce328a
(v1.7.1.9067) Support for Swedish and Russian
2021-12-12 09:42:03 +01:00
dr. M.S. (Matthijs) Berends
e18c49ed93
(v1.7.1.9063) not_intrinsic_resistant
2021-12-09 10:48:25 +01:00
dr. M.S. (Matthijs) Berends
694cf5ba77
(v1.7.1.9054) mdro() update - fixes #49 , first_isolate() speedup
2021-11-28 23:01:26 +01:00
dr. M.S. (Matthijs) Berends
2ab21b7af3
(v1.7.1.9026) updated DDDs
2021-08-19 23:43:02 +02:00
dr. M.S. (Matthijs) Berends
1b62bab007
(v1.7.1.9025) unit tests
2021-08-18 23:19:38 +02:00
dr. M.S. (Matthijs) Berends
a2d249962f
(v1.7.1.9023) Removed filter_ functions, new set_ab_names(), ATC code update, ab selector update, fixes #46 and fixed #47
2021-08-16 21:54:34 +02:00
dr. M.S. (Matthijs) Berends
625a6fb304
(v1.7.1.9015) removed S3 taxonomic_name again
2021-07-07 20:34:05 +02:00
dr. M.S. (Matthijs) Berends
ad10693a1a
(v1.7.1.9014) rep() for S3 classes
2021-07-06 16:35:14 +02:00
dr. M.S. (Matthijs) Berends
3bd50710e8
(v1.7.1.9010) fix for count_* and proportion_*
2021-07-04 12:00:41 +02:00
dr. M.S. (Matthijs) Berends
1908e7cc7a
(v1.7.1.9000) ab_class update, unit tests
2021-06-04 21:07:55 +02:00
dr. M.S. (Matthijs) Berends
2413efd5c1
(v1.6.0.9048) ab selectors overhaul
2021-05-19 22:55:42 +02:00
dr. M.S. (Matthijs) Berends
cfb7df823e
(v1.6.0.9044) betalactams() selector
2021-05-18 00:53:04 +02:00
dr. M.S. (Matthijs) Berends
12a8d59869
(v1.6.0.9015) italicise_taxonomy
2021-05-03 10:47:32 +02:00
dr. M.S. (Matthijs) Berends
93683a4ae2
(v1.6.0.9010) big first_isolate() update
2021-04-26 23:57:37 +02:00
dr. M.S. (Matthijs) Berends
70b803dbb6
(v1.6.0.9008) unlike, bugfix for col_mo naming
2021-04-23 09:59:36 +02:00
dr. M.S. (Matthijs) Berends
7a3139f7cc
(v1.6.0.9000) custom EUCAST rules
2021-04-07 08:37:42 +02:00
dr. M.S. (Matthijs) Berends
8d6ceb6a15
(v1.5.0.9040) removal of isolate_identifier
2021-03-08 09:44:17 +01:00
dr. M.S. (Matthijs) Berends
450bbe5fb7
(v1.5.0.9034) unit test fix
2021-03-07 21:16:45 +01:00
dr. M.S. (Matthijs) Berends
850c123de7
(v1.5.0.9032) All group generics for MICs
2021-03-07 13:52:39 +01:00
dr. M.S. (Matthijs) Berends
91dd755cac
(v1.5.0.9031) math processing of MICs
2021-03-05 15:36:39 +01:00
dr. M.S. (Matthijs) Berends
1737d56ae4
(v1.5.0.9026) vignette update, support for GISA
2021-02-25 12:31:12 +01:00
dr. M.S. (Matthijs) Berends
a673407904
(v1.5.0.9025) big plot and ggplot generics update
2021-02-25 10:33:08 +01:00
dr. M.S. (Matthijs) Berends
31ceba5441
(v1.5.0.9024) more speed improvements
2021-02-22 20:21:33 +01:00
dr. M.S. (Matthijs) Berends
4a84894f79
(v1.5.0.9016) only_rsi_columns update, documentation
2021-02-08 14:18:42 +01:00
dr. M.S. (Matthijs) Berends
20d638c193
(v1.5.0.9013) updated tibble printing colours
2021-01-28 16:09:30 +01:00
dr. M.S. (Matthijs) Berends
1ba44776a1
(v1.5.0.9008) Internal data sets to pkg, speed for auto col determination
2021-01-22 10:20:41 +01:00
dr. M.S. (Matthijs) Berends
e699de955c
(v1.5.0.9004) custom MDRO guideline
2021-01-17 00:26:48 +01:00
dr. M.S. (Matthijs) Berends
d014955ce0
(v.1.5.0.9000) implementation of EUCAST rules v11 (2021)
2021-01-12 22:08:04 +01:00
dr. M.S. (Matthijs) Berends
acbd0cf7ca
(v1.4.0.9046) get_episode
2020-12-27 00:07:00 +01:00
dr. M.S. (Matthijs) Berends
c8bcecf232
(v1.4.0.9037) random_* functions
2020-12-12 23:17:29 +01:00
