dr. M.S. (Matthijs) Berends
60747e56f0
gitlab fix
2018-10-23 21:37:49 +02:00
dr. M.S. (Matthijs) Berends
9fd38afeb1
CI fix gitlab
2018-10-23 21:26:57 +02:00
dr. M.S. (Matthijs) Berends
f4d6e1dafe
CI fixes
2018-10-23 21:17:05 +02:00
dr. M.S. (Matthijs) Berends
99323e704d
linux deps
2018-10-23 20:38:18 +02:00
dr. M.S. (Matthijs) Berends
0834bdfabc
fix for gitlab pipeline, add covr to appveyor
2018-10-23 20:04:11 +02:00
dr. M.S. (Matthijs) Berends
160e025609
try to fix gitlab pipelines
2018-10-23 19:49:31 +02:00
dr. M.S. (Matthijs) Berends
87757748bd
switch to gitlab
2018-10-23 16:49:40 +02:00
dr. M.S. (Matthijs) Berends
707aa20a37
fixes
2018-10-23 14:59:36 +02:00
dr. M.S. (Matthijs) Berends
0062a3facb
Add .gitlab-ci.yml
2018-10-23 12:53:42 +00:00
dr. M.S. (Matthijs) Berends
7997de6a6d
mdro and 1st isolate improvements
2018-10-23 11:15:05 +02:00
dr. M.S. (Matthijs) Berends
299c5bea43
na freq, removed factors
2018-10-23 09:42:26 +02:00
dr. M.S. (Matthijs) Berends
9c56257da1
freq - print title bold in markdown
2018-10-22 13:06:54 +02:00
dr. M.S. (Matthijs) Berends
c2a93b46db
breaks param, tidyr dep change, freq markdown
2018-10-22 12:32:59 +02:00
dr. M.S. (Matthijs) Berends
ec15b82fd6
param header for freq
2018-10-19 21:52:08 +02:00
dr. M.S. (Matthijs) Berends
86b03577a7
fix for as.mo, added also_single_tested
2018-10-19 13:53:31 +02:00
dr. M.S. (Matthijs) Berends
032c0d51ef
better verbose in EUCAST
2018-10-19 00:57:10 +02:00
dr. M.S. (Matthijs) Berends
b464dd524a
new verbose
2018-10-19 00:17:03 +02:00
dr. M.S. (Matthijs) Berends
5727800b9a
readme fix
2018-10-18 21:43:12 +02:00
dr. M.S. (Matthijs) Berends
0ef91be3ac
param rules for EUCAST
2018-10-18 12:10:10 +02:00
dr. M.S. (Matthijs) Berends
693f64bdbf
new EUCAST rules: clinical breakpoints
2018-10-17 17:32:34 +02:00
dr. M.S. (Matthijs) Berends
d5a41de711
parameter combine_IR
2018-10-16 09:59:31 +02:00
dr. M.S. (Matthijs) Berends
5b5b95a47b
count_all and some fixes
2018-10-12 16:35:18 +02:00
dr. M.S. (Matthijs) Berends
e7d937d36e
update NEWS
2018-10-10 10:50:19 +02:00
dr. M.S. (Matthijs) Berends
67521394f6
more unit tests
2018-10-09 15:41:44 +02:00
dr. M.S. (Matthijs) Berends
95c9fdc552
CRAN fixes for release 0.4.0
...
https://cran.r-project.org/web/checks/check_results_AMR.html
2018-10-09 13:53:33 +02:00
dr. M.S. (Matthijs) Berends
c7c57f4042
0.4.0, just published on CRAN
2018-10-01 19:36:42 +02:00
dr. M.S. (Matthijs) Berends
6d761436f7
benchmarks on readme and speed improvement for direct mo codes
2018-10-01 16:26:02 +02:00
dr. M.S. (Matthijs) Berends
ed17db0263
renamed year columns to ref
2018-10-01 14:44:40 +02:00
dr. M.S. (Matthijs) Berends
3119a221e5
authors from ITIS, diff for freq
2018-10-01 11:39:43 +02:00
dr. M.S. (Matthijs) Berends
92c9cc2608
diff for freq, fix for mo_shortname
2018-09-29 21:54:32 +02:00
dr. M.S. (Matthijs) Berends
a6aa9e95fb
completed old taxonomic names
2018-09-28 20:13:13 +02:00
dr. M.S. (Matthijs) Berends
768fe17324
removed clipboard functions as it violated CRAN policies
2018-09-28 16:05:18 +02:00
dr. M.S. (Matthijs) Berends
2b0080995e
speed improvement for as.mo, more old taxonomic names
2018-09-27 23:23:48 +02:00
dr. M.S. (Matthijs) Berends
450992baea
new: 1680 old taxonomic names
2018-09-25 16:44:40 +02:00
dr. M.S. (Matthijs) Berends
da60f27877
travis cant find knitr vignette builder
2018-09-25 00:36:35 +02:00
dr. M.S. (Matthijs) Berends
9c566585b0
first inclusion of ITIS data
2018-09-24 23:33:29 +02:00
dr. M.S. (Matthijs) Berends
df5d82fff3
unit tests
2018-09-17 21:51:21 +02:00
dr. M.S. (Matthijs) Berends
5d80cef338
added taxonomic data from ITIS
2018-09-17 20:53:32 +02:00
dr. M.S. (Matthijs) Berends
7680e4edd8
add shortest and longest to freq for characters
2018-09-17 09:42:09 +02:00
dr. M.S. (Matthijs) Berends
db14781593
add labels_rsi_count
2018-09-16 22:11:17 +02:00
dr. M.S. (Matthijs) Berends
b792a2754e
added prevalence column and alterted as.mo algorith to use it, added ab_name as alias
2018-09-16 16:43:29 +02:00
dr. M.S. (Matthijs) Berends
b0ca49d68d
small improvement for is.rsi.eligible, more unit tests
2018-09-14 11:54:01 +02:00
dr. M.S. (Matthijs) Berends
cf5711fb0b
algorithm improvement
2018-09-14 10:31:21 +02:00
dr. M.S. (Matthijs) Berends
d049ec9e69
ggplot2_rsi fix
2018-09-13 14:48:34 +02:00
dr. M.S. (Matthijs) Berends
cb0d74a4f0
support for French and Italian, added quote to freq
2018-09-10 15:45:25 +02:00
dr. M.S. (Matthijs) Berends
b83e6a9380
algoritm improvement, removed all Catabacter except for C. hongkongensis
2018-09-10 11:40:54 +02:00
dr. M.S. (Matthijs) Berends
4816419f0c
AI improvements for microorganisms
2018-09-09 12:11:44 +02:00
dr. M.S. (Matthijs) Berends
936198372e
translate CoNS
2018-09-08 16:24:12 +02:00
dr. M.S. (Matthijs) Berends
26f5be0033
support for portuguese, language determination based on system
2018-09-08 16:06:47 +02:00
dr. M.S. (Matthijs) Berends
b8a6c9af19
allow failure on macOS
2018-09-07 10:20:01 +02:00
