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AMR
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188 Commits

Author SHA1 Message Date
dr. M.S. (Matthijs) Berends 640888f408 (v2.1.1.9064) update all microbial taxonomy, add mycobank, big documentation update 2024-07-16 14:53:17 +02:00
dr. M.S. (Matthijs) Berends 4f9db23684 check for windows unit test (no-check) 2024-06-23 16:18:42 +02:00
dr. M.S. (Matthijs) Berends 82585901a7 (v2.1.1.9061) animal host fix 2024-06-19 15:41:45 +02:00
dr. M.S. (Matthijs) Berends c67d003e9e (v2.1.1.9060) SDD results now in `as.sir()` 2024-06-19 15:08:23 +02:00
dr. M.S. (Matthijs) Berends d9e66fb118 (v2.1.1.9056) example fix 2024-06-17 14:52:18 +02:00
dr. M.S. (Matthijs) Berends 2dee1d71dc (v2.1.1.9053) add `verbose` to `as.sir()`, unit test fix 2024-06-17 10:38:45 +02:00
dr. M.S. (Matthijs) Berends 68f7795481 (v2.1.1.9052) unit test fix 2024-06-16 20:53:50 +02:00
dr. M.S. (Matthijs) Berends 9bf7584d58 (v2.1.1.9049) new 2024 breakpoints, add `AMO`, set NI instead of N 2024-06-14 22:39:01 +02:00
dr. M.S. (Matthijs) Berends de17de1be9 (v2.1.1.9048) vctrs update for sir 2024-06-13 20:55:17 +02:00
dr. M.S. (Matthijs) Berends 3179216c81 (v2.1.1.9047) unit test and index 2024-06-13 07:37:53 +02:00
dr. M.S. (Matthijs) Berends cd1b37ff69 (v2.1.1.9046) unit test fix 2024-06-12 14:37:44 +02:00
dr. M.S. (Matthijs) Berends c753afcd76 (v2.1.1.9045) fix host in animal guidelines 2024-06-12 10:32:43 +02:00
dr. M.S. (Matthijs) Berends 3a54711dfe (v2.1.1.9044) update website 2024-06-10 15:10:54 +02:00
dr. M.S. (Matthijs) Berends 31207952d3 (v2.1.1.9043) fix sir translation with as.double 2024-06-10 10:34:45 +02:00
dr. M.S. (Matthijs) Berends 60c6c21e45 fix SIR interpretation 2024-05-31 09:50:54 +02:00
dr. M.S. (Matthijs) Berends d214f74e25 allow column name for `ab` in `as.sir()` 2024-05-20 21:29:13 +02:00
dr. M.S. (Matthijs) Berends 08a27922a8 new SDD and N for `as.sir()` 2024-05-20 15:27:04 +02:00
dr. M.S. (Matthijs) Berends 25089e811e correct for high-level abx 2024-04-24 09:50:32 +02:00
dr. M.S. (Matthijs) Berends 2899b3c840 new `mo_group_members()` 2024-04-19 10:18:21 +02:00
dr. M.S. (Matthijs) Berends 0039cb05d6 update MIC comparisons 2024-04-05 16:44:43 +02:00
dr. M.S. (Matthijs) Berends 4170def0ec unit test 2024-03-09 16:46:59 +01:00
dr. M.S. (Matthijs) Berends 7be4dabbc0 support veterinary MIC/disk translation 2024-02-24 15:16:52 +01:00
Emil Rossing 74ea6c8c60
Added support for 'html' in italicize_taxonomy() (#134) 2024-02-13 13:47:07 +01:00
dr. M.S. (Matthijs) Berends 7059568581 fix scale functions 2023-12-03 16:51:54 +01:00
dr. M.S. (Matthijs) Berends ca72a646d0 scientific notation for MICs 2023-10-20 15:45:00 +02:00
dr. M.S. (Matthijs) Berends bcab4bc9ba Fixes #123 2023-10-20 15:07:11 +02:00
dr. M.S. (Matthijs) Berends 7cda9e575b prepare for CRAN 2023-10-20 14:51:48 +02:00
dr. M.S. (Matthijs) Berends fd480d1a9a console hyperlink fix 2023-07-14 09:50:13 +02:00
dr. M.S. (Matthijs) Berends 8df1cd8d97 interpretation fixes 2023-07-11 09:50:45 +02:00
dr. M.S. (Matthijs) Berends dab20c09f6 unit test 2023-07-10 18:30:26 +02:00
dr. M.S. (Matthijs) Berends 70c601ca11 breakpoints UTI interpretation fix 2023-07-10 13:41:52 +02:00
dr. M.S. (Matthijs) Berends acb534102b new species groups, updated clinical breakpoints 2023-07-08 17:30:05 +02:00
Dr. Matthijs Berends f065945d7b
Update clinical breakpoints and fix some `as.mo()` bugs (#117) 
* Updates clinical breakpoints EUCAST/CLSI 2023, fixes #102, fixes #112, fixes #113, fixes #114, fixes #115
* docs
* implement ecoffs
* unit tests
 2023-06-22 15:10:59 +02:00
dr. M.S. (Matthijs) Berends 9591688811 documentation update 2023-05-27 10:39:22 +02:00
dr. M.S. (Matthijs) Berends e1966503ee unit testing R4.3 2023-05-26 20:37:00 +02:00
dr. M.S. (Matthijs) Berends 8179092c57 add XPT files for SAS software 2023-05-12 10:07:55 +02:00
dr. M.S. (Matthijs) Berends 91fa73dedf add oxygen tolerance 2023-05-11 21:56:27 +02:00
dr. M.S. (Matthijs) Berends 9de19fdc49 documentation 2023-04-21 10:07:25 +02:00
dr. M.S. (Matthijs) Berends ad3061c754 unit test 2023-04-15 10:32:37 +02:00
dr. M.S. (Matthijs) Berends 1a02d302d4 Fix translatable strings 2023-04-15 09:32:13 +02:00
dr. M.S. (Matthijs) Berends 1d3d7d40bc get episode unit tests 2023-02-24 19:54:56 +01:00
dr. M.S. (Matthijs) Berends 8d902410f9 unit tests 2023-02-18 14:56:06 +01:00
dr. M.S. (Matthijs) Berends 8d37c75860 unit tests 2023-02-14 15:59:40 +01:00
dr. M.S. (Matthijs) Berends a4cd38c433 fix for R < 3.2, `expect_warning()` on hold 2023-02-14 10:41:01 +01:00
dr. M.S. (Matthijs) Berends b6d2b1398d Fix for `antibiogram()` in R <=3.4 2023-02-13 10:21:43 +01:00
dr. M.S. (Matthijs) Berends 45a9697c84 unit tests 2023-02-12 17:10:48 +01:00
dr. M.S. (Matthijs) Berends 03294c7901 fix for Salmonella group A, unit tests 2023-02-10 16:47:25 +01:00
dr. M.S. (Matthijs) Berends bc434db835 bring back `antibiogram()`, without deps 2023-02-10 16:18:00 +01:00
dr. M.S. (Matthijs) Berends 70a7ba0206 fix first isolate 2023-02-10 13:13:17 +01:00
dr. M.S. (Matthijs) Berends 1a0dc4bf46 revert back to pre-antibiogram 2023-02-09 13:07:39 +01:00