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68abb00c59
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add include_screening to as.sir()
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2023-02-12 15:09:54 +01:00 |
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c740967cf2
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fix for binding rows
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2023-02-12 11:20:14 +01:00 |
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c51fb24363
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pm_bind_rows
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2023-02-11 22:28:48 +01:00 |
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b146de6d7f
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fix for bind_rows2, added 4 langs
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2023-02-11 21:57:12 +01:00 |
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2007c3eef3
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bind_rows
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2023-02-10 17:09:48 +01:00 |
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03294c7901
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fix for Salmonella group A, unit tests
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2023-02-10 16:47:25 +01:00 |
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bc434db835
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bring back antibiogram(), without deps
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2023-02-10 16:18:00 +01:00 |
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70a7ba0206
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fix first isolate
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2023-02-10 13:13:17 +01:00 |
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1a0dc4bf46
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revert back to pre-antibiogram
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2023-02-09 13:07:39 +01:00 |
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aa48c6bf53
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pm fixes
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2023-02-08 16:51:41 +01:00 |
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822e9de82c
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pm update, unit test fix?
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2023-02-08 13:48:06 +01:00 |
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75a4c1ef3e
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fixes2
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2023-02-06 14:34:38 +01:00 |
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f7dd890b79
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fixes
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2023-02-06 12:38:52 +01:00 |
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9e99e66f01
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use dplyr where available, new antibiogram() for WISCA, fixed Salmonella Typhi/Paratyphi
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2023-02-06 11:57:22 +01:00 |
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4b133d4c96
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unit tests
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2023-01-30 17:24:03 +01:00 |
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89a577805f
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prelim fix for g.test
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2023-01-30 12:26:48 +01:00 |
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7b00b4f34a
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unit tests
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2023-01-24 14:52:15 +01:00 |
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830c67f1bf
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documentation, unit tests
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2023-01-24 10:20:27 +01:00 |
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eef00069fd
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add all options to documentation
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2023-01-23 20:07:57 +01:00 |
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19fd0ef121
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sort sir history
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2023-01-23 15:01:21 +01:00 |
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Dr. Matthijs Berends
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98e62c9af2
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Replace RSI with SIR
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2023-01-21 23:47:20 +01:00 |
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24b12024ce
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unit test fix
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2023-01-20 09:45:03 +01:00 |
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593d740b84
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documentation, file permissions
|
2023-01-19 12:54:53 +01:00 |
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b94bc6c67b
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adding mo fixes
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2023-01-14 19:50:25 +01:00 |
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ca79068604
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Fix for adding MO's
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2023-01-14 17:10:10 +01:00 |
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33f269e2f4
|
contrib update
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2023-01-12 23:16:05 +01:00 |
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51906d6f97
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no overwriting taxonomy when adding microorganisms
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2023-01-12 11:33:28 +01:00 |
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1029aa2fdc
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algorithm improvement
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2023-01-07 14:53:14 +01:00 |
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08fe5a88c0
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documentation
|
2023-01-07 01:54:46 +01:00 |
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2375bfdcb5
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documentation
|
2023-01-07 01:51:19 +01:00 |
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84ed8c32bb
|
documentation
|
2023-01-06 19:21:04 +01:00 |
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86e28bafce
|
add mo_pathogenicity
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2023-01-06 13:35:37 +01:00 |
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268ec31d92
|
unit tests
|
2023-01-05 18:21:48 +01:00 |
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a98d0d75ea
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styler dep
|
2023-01-05 14:46:44 +01:00 |
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a0ee86536a
|
unit tests
|
2023-01-05 14:43:18 +01:00 |
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77d9cf1936
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documentation
|
2022-12-30 13:02:37 +01:00 |
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e4ea96cbf9
|
fix for R < 3.4
|
2022-12-30 12:57:27 +01:00 |
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1db74e86cd
|
good start-up practice
|
2022-12-29 16:23:57 +01:00 |
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61c0bdb7af
|
documentation
|
2022-12-28 15:04:59 +01:00 |
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ba3b237bdf
|
custom mo update
|
2022-12-28 14:20:10 +01:00 |
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f619fb683b
|
support new mo codes
|
2022-12-27 15:16:15 +01:00 |
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6f4bb603ec
|
unit tests
|
2022-12-20 22:18:50 +01:00 |
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f0a2cdbf5e
|
update mo algorithm
|
2022-12-20 16:14:04 +01:00 |
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b1b7534c78
|
incorporate Bartlett et al (2022)
|
2022-12-19 15:32:41 +01:00 |
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23fe427cbc
|
Fixes for Salmonella
|
2022-12-17 14:31:33 +01:00 |
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5f3a7694aa
|
microorganisms update, added Salmonella groups
|
2022-12-16 16:10:43 +01:00 |
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8da2467209
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updated taxonomy
|
2022-12-12 00:14:56 +01:00 |
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eed1c14b96
|
website update
|
2022-12-11 11:44:29 +01:00 |
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b1ead9c0fe
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doc update
|
2022-12-10 10:09:57 +01:00 |
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e7d7b94b3e
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no obligatory note on startup
|
2022-12-09 15:10:49 +01:00 |
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